Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0332 Fragaria x ananassa HOM05D002224 ORTHO05D002446 3.0e-126 455.3 245 100.0
FvH4_4g02970 Fragaria vesca HOM05D002224 ORTHO05D002446 5.5e-112 407.9 219 100.0
FAN17G0240 Fragaria x ananassa HOM05D002224 ORTHO05D002446 5.1e-110 401.4 219 98.2
FAN22G0018 Fragaria x ananassa HOM05D002224 ORTHO05D002446 8.7e-110 400.6 219 95.4
RcHm_v2.0_Chr4g0391041 Rosa chinensis HOM05D002224 ORTHO05D002446 1.3e-100 370.2 219 91.3
MD16G1211000 Malus domestica HOM05D002224 ORTHO05D002446 1.2e-79 300.4 220 75.0
Prupe.1G033200 Prunus persica HOM05D002224 ORTHO05D002446 1.8e-78 296.6 195 83.1
MD13G1209100 Malus domestica HOM05D002224 ORTHO05D002446 3.3e-77 292.4 239 70.7
GSVIVG01018133001 Vitis vinifera HOM05D002224 ORTHO05D002446 1.9e-72 276.6 224 65.2
Haze_11315 Corylus avellana HOM05D002224 ORTHO05D002446 9.7e-69 264.2 235 65.1
QL06p015938 Quercus lobata HOM05D002224 ORTHO05D002446 2.4e-67 259.6 207 71.0
Thecc.04G247700 Theobroma cacao HOM05D002224 ORTHO05D002446 2.7e-66 256.1 222 64.9
Potri.008G163300 Populus trichocarpa HOM05D002224 ORTHO05D002446 1.5e-64 250.4 217 63.1
Sabra10G0033800 Salix brachista HOM05D002224 ORTHO05D002446 3.2e-64 249.2 219 66.2
COL.COLO4_15805 Corchorus olitorius HOM05D002224 ORTHO05D002446 2.1e-63 246.5 214 65.0
Lalb_Chr19g0128431 Lupinus albus HOM05D002224 ORTHO05D002446 3.6e-63 245.7 220 62.7
Potri.010G075000 Populus trichocarpa HOM05D002224 ORTHO05D002446 1.4e-62 243.8 218 64.7
Lalb_Chr02g0150611 Lupinus albus HOM05D002224 ORTHO05D002446 1.8e-62 243.4 228 61.0
Sabra08G0124600 Salix brachista HOM05D002224 ORTHO05D002446 4.0e-62 242.3 218 61.5
Glyma.10G188600 Glycine max HOM05D002224 ORTHO05D002446 5.7e-61 238.4 212 60.8
Ca_11941_v3 Cicer arietinum L. HOM05D002224 ORTHO05D002446 2.2e-60 236.5 227 60.8
Gohir.A10G113500 Gossypium hirsutum HOM05D002224 ORTHO05D002446 8.3e-60 234.6 214 64.5
Manes.03G168200 Manihot esculenta HOM05D002224 ORTHO05D002446 8.3e-60 234.6 225 60.9
Ciclev10004192m.g Citrus clementina HOM05D002224 ORTHO05D002446 1.4e-59 233.8 214 62.1
Gorai.011G171900 Gossypium raimondii HOM05D002224 ORTHO05D002446 1.4e-59 233.8 214 64.5
Lj5g0007272 Lotus japonicus HOM05D002224 ORTHO05D002446 2.4e-59 233.0 228 62.3
CiPaw.01G189300 Carya illinoinensis HOM05D002224 ORTHO05D002446 3.1e-59 232.6 210 65.2
Gohir.D10G153900 Gossypium hirsutum HOM05D002224 ORTHO05D002446 3.1e-59 232.6 214 64.5
Atru.chr4.2182 Acer truncatum HOM05D002224 ORTHO05D002446 4.1e-59 232.3 186 67.2
Phvul.007G271500 Phaseolus vulgaris HOM05D002224 ORTHO05D002446 4.1e-59 232.3 217 61.8
Psat6g107120 Pisum sativum HOM05D002224 ORTHO05D002446 7.0e-59 231.5 225 61.8
VMungo0720G0464 Vigna mungo HOM05D002224 ORTHO05D002446 3.5e-58 229.2 223 59.6
VMungo0720G3056 Vigna mungo HOM05D002224 ORTHO05D002446 5.9e-58 228.4 216 60.6
Lj6g0016969 Lotus japonicus HOM05D002224 ORTHO05D002446 2.9e-57 226.1 219 61.2
Glyma.20G086700 Glycine max HOM05D002224 ORTHO05D002446 3.8e-57 225.7 218 61.5
Glyma.10G008700 Glycine max HOM05D002224 ORTHO05D002446 6.5e-57 224.9 217 60.8
arahy.Tifrunner.gnm1.ann1.V2K6XN Arachis hypogaea HOM05D002224 ORTHO05D002446 1.5e-56 223.8 227 58.1
Lalb_Chr03g0037041 Lupinus albus HOM05D002224 ORTHO05D002446 1.5e-56 223.8 217 59.9
CiPaw.02G115800 Carya illinoinensis HOM05D002224 ORTHO05D002446 2.5e-56 223.0 212 63.2
Glyma.20G202100 Glycine max HOM05D002224 ORTHO05D002446 9.5e-56 221.1 211 59.2
TAR365G0712 Trochodendron aralioides HOM05D002224 ORTHO05D002446 9.5e-56 221.1 221 58.4
Gohir.A09G223700 Gossypium hirsutum HOM05D002224 ORTHO05D002446 1.2e-55 220.7 216 60.6
TPR.G28750 Trifolium pratense HOM05D002224 ORTHO05D002446 1.6e-55 220.3 225 59.6
Gohir.D09G225700 Gossypium hirsutum HOM05D002224 ORTHO05D002446 3.6e-55 219.2 216 60.2
Duzib052G0795 Durio zibethinus HOM05D002224 ORTHO05D002446 6.1e-55 218.4 194 63.4
Medtr1g044450 Medicago truncatula HOM05D002224 ORTHO05D002446 6.1e-55 218.4 223 58.7
Gorai.006G247200 Gossypium raimondii HOM05D002224 ORTHO05D002446 8.0e-55 218.0 217 59.9
Rhsim02G0034400 Rhododendron simsii HOM05D002224 ORTHO05D002446 1.0e-54 217.6 227 58.1
Manes.15G037500 Manihot esculenta HOM05D002224 ORTHO05D002446 1.4e-54 217.2 221 58.8
CANSAT78G0691 Cannabis sativa HOM05D002224 ORTHO05D002446 1.8e-54 216.9 226 60.6
Cpa.g.sc44.110 Carica papaya HOM05D002224 ORTHO05D002446 2.3e-54 216.5 212 62.7
Nn1g02667 Nelumbo nucifera HOM05D002224 ORTHO05D002446 5.2e-54 215.3 221 55.2
Actinidia05459 Actinidia chinensis HOM05D002224 ORTHO05D002446 6.8e-54 214.9 218 57.8
Nn3g19583 Nelumbo nucifera HOM05D002224 ORTHO05D002446 6.8e-54 214.9 219 56.6
Rhsim04G0189200 Rhododendron simsii HOM05D002224 ORTHO05D002446 1.5e-53 213.8 218 58.7
TWI09G1092 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 2.0e-53 213.4 220 60.0
Eucgr.H03150 Eucalyptus grandis HOM05D002224 ORTHO05D002446 2.6e-53 213.0 235 53.6
Dinv29900 Davidia involucrata HOM05D002224 ORTHO05D002446 3.4e-53 212.6 214 58.4
Duzib212G0982 Durio zibethinus HOM05D002224 ORTHO05D002446 3.4e-53 212.6 196 61.7
Phvul.007G129700 Phaseolus vulgaris HOM05D002224 ORTHO05D002446 3.4e-53 212.6 222 55.9
Ca_11949_v3 Cicer arietinum L. HOM05D002224 ORTHO05D002446 1.3e-52 210.7 217 59.0
Actinidia08434 Actinidia chinensis HOM05D002224 ORTHO05D002446 8.3e-52 208.0 218 59.2
arahy.Tifrunner.gnm1.ann1.P060ZG Arachis hypogaea HOM05D002224 ORTHO05D002446 1.4e-51 207.2 218 56.4
TAR362G0167 Trochodendron aralioides HOM05D002224 ORTHO05D002446 5.4e-51 205.3 222 58.1
MELO3C006460.2 Cucumis melo HOM05D002224 ORTHO05D002446 1.2e-50 204.1 219 57.5
ClCG05G004530 Citrullus lanatus HOM05D002224 ORTHO05D002446 1.6e-50 203.8 224 56.7
CsaV3_3G012500 Cucumis sativus L. HOM05D002224 ORTHO05D002446 2.7e-50 203.0 219 57.5
Lalb_Chr21g0312421 Lupinus albus HOM05D002224 ORTHO05D002446 3.5e-50 202.6 229 56.8
vmacro15416 Vaccinium macrocarpon HOM05D002224 ORTHO05D002446 1.7e-49 200.3 240 50.8
Gohir.A02G036400 Gossypium hirsutum HOM05D002224 ORTHO05D002446 3.8e-49 199.1 219 55.3
TAR633G1794 Trochodendron aralioides HOM05D002224 ORTHO05D002446 5.0e-49 198.7 220 56.8
Gohir.D02G043000 Gossypium hirsutum HOM05D002224 ORTHO05D002446 8.6e-49 198.0 219 56.2
Gorai.005G047400 Gossypium raimondii HOM05D002224 ORTHO05D002446 1.1e-48 197.6 219 55.7
TAR636G2710 Trochodendron aralioides HOM05D002224 ORTHO05D002446 1.1e-48 197.6 222 55.4
EL10Ac3g05897 Beta vulgaris HOM05D002224 ORTHO05D002446 1.9e-48 196.8 235 52.3
TPR.G26447 Trifolium pratense HOM05D002224 ORTHO05D002446 3.3e-48 196.1 212 56.6
Gohir.D01G022400 Gossypium hirsutum HOM05D002224 ORTHO05D002446 5.6e-48 195.3 207 57.5
Gorai.002G024900 Gossypium raimondii HOM05D002224 ORTHO05D002446 5.6e-48 195.3 207 57.5
vmacro08439 Vaccinium macrocarpon HOM05D002224 ORTHO05D002446 7.3e-48 194.9 219 55.7
Lj6C657T15 Lonicera japonica HOM05D002224 ORTHO05D002446 1.2e-47 194.1 220 55.5
CSS0035478 Camellia sinensis var. sinensis HOM05D002224 ORTHO05D002446 4.7e-47 192.2 219 56.2
TWI53G1239 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 1.0e-46 191.0 223 55.2
TWI53G1395 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 1.0e-46 191.0 223 55.2
Gohir.A01G024400 Gossypium hirsutum HOM05D002224 ORTHO05D002446 5.2e-46 188.7 212 55.2
AUR62002254 Chenopodium quinoa HOM05D002224 ORTHO05D002446 8.9e-46 188.0 230 51.7
AUR62015466 Chenopodium quinoa HOM05D002224 ORTHO05D002446 4.4e-45 185.7 230 51.3
Medtr1g073790 Medicago truncatula HOM05D002224 ORTHO05D002446 4.4e-45 185.7 163 62.0
TWI73G0813 Tripterygium wilfordii HOM05D002224 ORTHO05D002446 3.7e-44 182.6 223 53.4
PGR004G2419 Punica granatum HOM05D002224 ORTHO05D002446 8.3e-44 181.4 216 52.3
Psat6g132600 Pisum sativum HOM05D002224 ORTHO05D002446 1.4e-43 180.6 161 62.7
Nitab4.5_0003331g0070 Nicotiana tabacum HOM05D002224 ORTHO05D002446 3.2e-43 179.5 213 51.6
Sed0005071 Sechium edule HOM05D002224 ORTHO05D002446 3.2e-43 179.5 226 52.7
PSO210G1885 Papaver somniferum HOM05D002224 ORTHO05D002446 1.6e-42 177.2 221 52.0
Hund11858 Selenicereus undatus HOM05D002224 ORTHO05D002446 1.6e-42 177.2 227 49.3
PSO832G3587 Papaver somniferum HOM05D002224 ORTHO05D002446 2.0e-42 176.8 222 52.3
Cc03_g04990 Coffea canephora HOM05D002224 ORTHO05D002446 2.7e-42 176.4 220 51.8
Actinidia04471 Actinidia chinensis HOM05D002224 ORTHO05D002446 5.9e-42 175.3 218 52.3
Actinidia40081 Actinidia chinensis HOM05D002224 ORTHO05D002446 5.9e-42 175.3 196 52.6
Sed0000078 Sechium edule HOM05D002224 ORTHO05D002446 8.6e-41 171.4 227 51.5
Oeu021414.1 Olea europaea HOM05D002224 ORTHO05D002446 2.5e-40 169.9 216 50.5
Hund04557 Selenicereus undatus HOM05D002224 ORTHO05D002446 2.5e-40 169.9 222 51.4
arahy.Tifrunner.gnm1.ann1.1XI841 Arachis hypogaea HOM05D002224 ORTHO05D002446 4.3e-40 169.1 199 53.8
arahy.Tifrunner.gnm1.ann1.E2XQ4Y Arachis hypogaea HOM05D002224 ORTHO05D002446 7.3e-40 168.3 199 56.3
Aqoxy5G00291 Aquilegia oxysepala HOM05D002224 ORTHO05D002446 1.2e-39 167.5 223 48.0
Lj3A795G23 Lonicera japonica HOM05D002224 ORTHO05D002446 4.7e-39 165.6 189 60.3
Peaxi162Scf00019g00284 Petunia axillaris HOM05D002224 ORTHO05D002446 1.8e-38 163.7 213 49.8
Solyc03g005430.4 Solanum lycopersicum HOM05D002224 ORTHO05D002446 1.8e-38 163.7 212 48.6
CAN.G638.71 Capsicum annuum HOM05D002224 ORTHO05D002446 4.0e-38 162.5 212 48.6
Sopen03g001460 Solanum pennellii HOM05D002224 ORTHO05D002446 1.2e-37 161.0 208 48.6
SalBow2G1285 Salvia bowleyana HOM05D002224 ORTHO05D002446 1.5e-37 160.6 224 47.8
MBI11_g40184_MAGBIO Magnolia biondii HOM05D002224 ORTHO05D002446 2.6e-37 159.8 220 48.2
Sc13g0005120 Simmondsia chinensis HOM05D002224 ORTHO05D002446 3.4e-37 159.5 227 48.9
Nitab4.5_0000436g0070 Nicotiana tabacum HOM05D002224 ORTHO05D002446 1.1e-35 154.5 213 46.9
Ah.07g207460 Amaranthus hybridus HOM05D002224 ORTHO05D002446 5.4e-35 152.1 223 47.1
DCAR_027286 Daucus carota HOM05D002224 ORTHO05D002446 5.4e-35 152.1 218 46.3
Sc25g0004120 Simmondsia chinensis HOM05D002224 ORTHO05D002446 5.4e-35 152.1 225 45.8
ECA240G1645 Erigeron canadensis HOM05D002224 ORTHO05D002446 9.2e-35 151.4 221 48.9
Nitab4.5_0005738g0010 Nicotiana tabacum HOM05D002224 ORTHO05D002446 7.8e-34 148.3 202 49.5
Nitab4.5_0008399g0010 Nicotiana tabacum HOM05D002224 ORTHO05D002446 8.6e-33 144.8 186 51.1
SGA_v2.0_scaffold79G25653 Striga asiatica HOM05D002224 ORTHO05D002446 1.1e-32 144.4 229 45.4
Peaxi162Scf00024g00053 Petunia axillaris HOM05D002224 ORTHO05D002446 4.3e-32 142.5 174 54.0
SalBow3G3388 Salvia bowleyana HOM05D002224 ORTHO05D002446 7.3e-32 141.7 209 44.5
MSTRG.21894 Avicennia marina HOM05D002224 ORTHO05D002446 1.5e-29 134.0 220 45.0
CAN.G1007.9 Capsicum annuum HOM05D002224 ORTHO05D002446 5.8e-29 132.1 217 45.2
DCAR_002341 Daucus carota HOM05D002224 ORTHO05D002446 1.7e-28 130.6 225 45.8
Oeu002596.1 Olea europaea HOM05D002224 ORTHO05D002446 4.9e-28 129.0 208 45.2
AT1G04300 Arabidopsis thaliana HOM05D002224 ORTHO05D002446 1.4e-27 127.5 165 49.7
SGA_v2.0_scaffold308G48105 Striga asiatica HOM05D002224 ORTHO05D002446 1.4e-27 127.5 226 43.4
Sopen06g018860 Solanum pennellii HOM05D002224 ORTHO05D002446 4.1e-27 125.9 191 42.4
Solyc06g053750.3 Solanum lycopersicum HOM05D002224 ORTHO05D002446 5.4e-27 125.6 191 42.4
Sp1g03110 Schrenkiella parvula HOM05D002224 ORTHO05D002446 7.1e-27 125.2 180 45.6
PGSC0003DMG401016322 Solanum tuberosum HOM05D002224 ORTHO05D002446 7.1e-27 125.2 176 44.9
AL1G13900 Arabidopsis lyrata HOM05D002224 ORTHO05D002446 2.7e-26 123.2 191 46.1
Carub.0001s0349 Capsella rubella HOM05D002224 ORTHO05D002446 2.7e-26 123.2 173 46.2
DCAR_030728 Daucus carota HOM05D002224 ORTHO05D002446 2.7e-26 123.2 173 48.6
HanXRQChr03g0092341 Helianthus annuus HOM05D002224 ORTHO05D002446 2.7e-26 123.2 223 43.5
THA.LOC104815986 Tarenaya hassleriana HOM05D002224 ORTHO05D002446 4.6e-26 122.5 217 42.9
Aqoxy2G03594 Aquilegia oxysepala HOM05D002224 ORTHO05D002446 1.3e-25 120.9 191 50.3
Thhalv10006644m.g Eutrema salsugineum HOM05D002224 ORTHO05D002446 1.7e-25 120.6 198 44.4
ATR0665G342 Amborella trichopoda HOM05D002224 ORTHO05D002446 4.3e-24 115.9 154 49.4
C08p01010 Brassica napus HOM05D002224 ORTHO05D002446 1.6e-23 114.0 193 44.6
BcaC07g36918 Brassica carinata HOM05D002224 ORTHO05D002446 2.8e-23 113.2 166 46.4
BolC8t46901H Brassica oleracea HOM05D002224 ORTHO05D002446 8.1e-23 111.7 193 44.6
CARHR003630 Cardamine hirsuta HOM05D002224 ORTHO05D002446 8.1e-23 111.7 181 44.2
AT5G43560 Arabidopsis thaliana HOM05D002224 ORTHO05D002446 4.0e-22 109.4 158 47.5
A08p37000 Brassica napus HOM05D002224 ORTHO05D002446 4.0e-22 109.4 193 43.5
BraA08t35600Z Brassica rapa HOM05D002224 ORTHO05D002446 4.0e-22 109.4 193 43.5
Lsat_1_v5_gn_3_122660 Lactuca sativa HOM05D002224 ORTHO05D002446 5.2e-22 109.0 205 41.5
THA.LOC104801093 Tarenaya hassleriana HOM05D002224 ORTHO05D002446 5.2e-22 109.0 133 54.9
Oeu058878.1 Olea europaea HOM05D002224 ORTHO05D002446 6.8e-22 108.6 207 43.0
Sp2g08380 Schrenkiella parvula HOM05D002224 ORTHO05D002446 1.5e-21 107.5 158 46.2
MSTRG.24697 Avicennia marina HOM05D002224 ORTHO05D002446 5.8e-21 105.5 223 43.5
HanXRQChr13g0424301 Helianthus annuus HOM05D002224 ORTHO05D002446 1.3e-20 104.4 207 44.4
CARHR180040 Cardamine hirsuta HOM05D002224 ORTHO05D002446 1.9e-19 100.5 159 44.0
FAN12G1014 Fragaria x ananassa HOM05D002224 ORTHO05D002446 2.4e-19 100.1 50 100.0
AL8G16740 Arabidopsis lyrata HOM05D002224 ORTHO05D002446 4.1e-19 99.4 160 45.0
Aa31LG5G3630 Aethionema arabicum HOM05D002224 ORTHO05D002446 2.7e-18 96.7 191 39.3
BraA10t42539Z Brassica rapa HOM05D002224 ORTHO05D002446 3.0e-17 93.2 180 42.8
Solyc09g089560.4 Solanum lycopersicum HOM05D002224 ORTHO05D002446 3.0e-17 93.2 133 45.9
A10p02700 Brassica napus HOM05D002224 ORTHO05D002446 3.9e-17 92.8 180 42.8
Glyma.19G101200 Glycine max HOM05D002224 ORTHO05D002446 1.1e-16 91.3 92 57.6
CDE07G0985 Ceratophyllum demersum HOM05D002224 ORTHO05D002446 1.9e-16 90.5 223 32.3
BcaC07g42194 Brassica carinata HOM05D002224 ORTHO05D002446 5.6e-16 89.0 157 39.5
Sopen09g032480 Solanum pennellii HOM05D002224 ORTHO05D002446 9.6e-16 88.2 174 39.1
Migut.G00445 Erythranthe guttata HOM05D002224 ORTHO05D002446 2.1e-15 87.0 203 40.4
HPP92_010253 Vanilla planifolia HOM05D002224 ORTHO05D002446 4.7e-15 85.9 119 46.2
C05p02490 Brassica napus HOM05D002224 ORTHO05D002446 8.1e-15 85.1 180 40.6
BolC5t29028H Brassica oleracea HOM05D002224 ORTHO05D002446 8.1e-15 85.1 180 40.6
BcaC07g42175 Brassica carinata HOM05D002224 ORTHO05D002446 2.0e-13 80.5 158 40.5
C08p52350 Brassica napus HOM05D002224 ORTHO05D002446 2.0e-13 80.5 158 40.5
SEGI_07200 Sequoiadendron giganteum HOM05D002224 ORTHO05D002446 3.4e-13 79.7 163 36.8
BolC8t52764H Brassica oleracea HOM05D002224 ORTHO05D002446 4.4e-13 79.3 158 40.5
unitig_748.g8318 Utricularia gibba HOM05D002224 ORTHO05D002446 4.9e-12 75.9 215 33.5
Zm00001eb224820 Zea mays HOM05D002224 ORTHO05D002446 9.3e-11 71.6 114 43.0
Zm00001eb030950 Zea mays HOM05D002224 ORTHO05D002446 1.6e-10 70.9 126 38.9
Zm00001eb135380 Zea mays HOM05D002224 ORTHO05D002446 6.0e-10 68.9 178 35.4
Nitab4.5_0005738g0020 Nicotiana tabacum HOM05D000243 ORTHO05D018895 2.3e-09 67.0 203 35.5
Nitab4.5_0001418g0030 Nicotiana tabacum HOM05D000243 ORTHO05D018895 5.1e-09 65.9 180 34.4
A09p67930 Brassica napus HOM05D002224 ORTHO05D002446 4.3e-08 62.8 151 37.1
CDE07G1877 Ceratophyllum demersum HOM05D002224 ORTHO05D002446 5.6e-08 62.4 223 29.1
BraA09t42128Z Brassica rapa HOM05D002224 ORTHO05D002446 1.3e-07 61.2 151 36.4
CAN.G1007.7 Capsicum annuum HOM05D000243 ORTHO05D018895 1.6e-07 60.8 99 45.5
ECA233G3249 Erigeron canadensis HOM05D002224 ORTHO05D002446 2.1e-07 60.5 176 33.5
SHI00617 Sapria himalayana HOM05D002224 ORTHO05D002446 8.1e-07 58.5 207 34.3
Pp3c12_900 Physcomitrium patens HOM05D002224 ORTHO05D002446 1.8e-06 57.4 171 31.6
Pp3c12_910 Physcomitrium patens HOM05D002224 ORTHO05D002446 1.8e-06 57.4 171 31.6
HPP92_010454 Vanilla planifolia HOM05D000066 ORTHO05D427618 2.4e-06 57.0 111 36.9


User provided reference genes

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