Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0087 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 2342.0 1234 100.0
FvH4_4g18310 Fragaria vesca HOM05D001406 ORTHO05D006300 0.0e+00 2257.3 1204 98.8
FAN12G4194 Fragaria x ananassa HOM05D001406 ORTHO05D006300 0.0e+00 2246.1 1204 98.4
RcHm_v2.0_Chr4g0422791 Rosa chinensis HOM05D001406 ORTHO05D006300 0.0e+00 2080.8 1232 89.7
MD16G1167900 Malus domestica HOM05D001406 ORTHO05D006300 0.0e+00 1745.3 1181 75.9
QL06p009115 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1572.0 1191 69.4
Haze_01188 Corylus avellana HOM05D001406 ORTHO05D006300 0.0e+00 1570.8 1194 69.6
Cfa015397 Carpinus fangiana HOM05D001406 ORTHO05D006300 0.0e+00 1567.7 1193 69.4
CiPaw.01G147700 Carya illinoinensis HOM05D001406 ORTHO05D006300 0.0e+00 1562.4 1233 67.3
Dinv44369 Davidia involucrata HOM05D001406 ORTHO05D006300 0.0e+00 1540.4 1176 69.0
CSS0049595 Camellia sinensis var. sinensis HOM05D001406 ORTHO05D006300 0.0e+00 1528.8 1199 68.0
Lj6C678T4 Lonicera japonica HOM05D001406 ORTHO05D006300 0.0e+00 1522.3 1194 67.1
Thecc.04G286100 Theobroma cacao HOM05D001406 ORTHO05D006300 0.0e+00 1514.6 1193 66.9
Hma1.2p1_1185F.1_g265020 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 0.0e+00 1500.7 1191 66.4
Duzib212G0336 Durio zibethinus HOM05D001406 ORTHO05D006300 0.0e+00 1496.9 1187 66.6
Actinidia00013 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1491.1 1186 66.2
CANSAT78G1952 Cannabis sativa HOM05D001406 ORTHO05D006300 0.0e+00 1475.3 1183 66.0
Gorai.011G191000 Gossypium raimondii HOM05D001406 ORTHO05D006300 0.0e+00 1471.4 1185 65.3
Gohir.D10G170900 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1468.8 1185 65.1
Potri.010G013300 Populus trichocarpa HOM05D001406 ORTHO05D006300 0.0e+00 1464.1 1181 66.6
Sabra10G0008500 Salix brachista HOM05D001406 ORTHO05D006300 0.0e+00 1458.4 1182 66.2
Rhsim02G0008400 Rhododendron simsii HOM05D001406 ORTHO05D006300 0.0e+00 1455.3 1243 64.0
vmacro15227 Vaccinium macrocarpon HOM05D001406 ORTHO05D006300 0.0e+00 1451.0 1225 64.4
Cpa.g.sc16.181 Carica papaya HOM05D001406 ORTHO05D006300 0.0e+00 1449.1 1191 65.4
TAR370G0006 Trochodendron aralioides HOM05D001406 ORTHO05D006300 0.0e+00 1448.3 1193 65.0
Nn4g25794 Nelumbo nucifera HOM05D001406 ORTHO05D006300 0.0e+00 1439.5 1196 63.7
GSVIVG01017722001 Vitis vinifera HOM05D001406 ORTHO05D006300 0.0e+00 1436.0 1155 65.9
Sed0021428 Sechium edule HOM05D001406 ORTHO05D006300 0.0e+00 1422.1 1189 63.0
TWI53G1101 Tripterygium wilfordii HOM05D001406 ORTHO05D006300 0.0e+00 1414.8 1197 62.7
Gohir.A10G164700 Gossypium hirsutum HOM05D001406 ORTHO05D006300 0.0e+00 1407.9 1185 63.2
Hund20543 Selenicereus undatus HOM05D001406 ORTHO05D006300 0.0e+00 1401.7 1187 62.2
Phvul.009G248800 Phaseolus vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1397.9 1196 61.5
Psat1g154920 Pisum sativum HOM05D001406 ORTHO05D006300 0.0e+00 1394.0 1191 62.0
CAN.G484.37 Capsicum annuum HOM05D001406 ORTHO05D006300 0.0e+00 1393.3 1183 62.2
arahy.Tifrunner.gnm1.ann1.4JB89L Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1392.1 1180 62.3
Glyma.09G044100 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1392.1 1192 61.7
PGSC0003DMG401004707 Solanum tuberosum HOM05D001406 ORTHO05D006300 0.0e+00 1390.9 1196 61.6
Sopen12g034190 Solanum pennellii HOM05D001406 ORTHO05D006300 0.0e+00 1389.8 1196 61.5
Oeu026316.2 Olea europaea HOM05D001406 ORTHO05D006300 0.0e+00 1379.0 1188 61.9
Aqoxy2G02952 Aquilegia oxysepala HOM05D001406 ORTHO05D006300 0.0e+00 1378.2 1200 61.2
Actinidia14294 Actinidia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1376.3 1201 62.0
Ca_01929_v3 Cicer arietinum L. HOM05D001406 ORTHO05D006300 0.0e+00 1374.8 1192 61.1
Cc03_g01780 Coffea canephora HOM05D001406 ORTHO05D006300 0.0e+00 1374.8 1204 61.7
PSO210G3685 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1370.1 1184 62.3
VMungo1309G1537 Vigna mungo HOM05D001406 ORTHO05D006300 0.0e+00 1368.6 1196 60.3
Glyma.15G149000 Glycine max HOM05D001406 ORTHO05D006300 0.0e+00 1367.1 1192 60.7
AUR62025017 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1365.9 1190 61.6
Solyc12g099510.3 Solanum lycopersicum HOM05D001406 ORTHO05D006300 0.0e+00 1364.0 1176 61.8
Ciclev10004172m.g Citrus clementina HOM05D001406 ORTHO05D006300 0.0e+00 1361.7 1179 62.1
MBI19_g25352_MAGBIO Magnolia biondii HOM05D001406 ORTHO05D006300 0.0e+00 1359.7 1217 60.5
PSO170G4998 Papaver somniferum HOM05D001406 ORTHO05D006300 0.0e+00 1359.0 1184 62.1
Medtr2g436590 Medicago truncatula HOM05D001406 ORTHO05D006300 0.0e+00 1358.6 1187 60.7
Atru.chr4.2868 Acer truncatum HOM05D001406 ORTHO05D006300 0.0e+00 1356.7 1145 63.7
AUR62034308 Chenopodium quinoa HOM05D001406 ORTHO05D006300 0.0e+00 1349.3 1195 61.2
HanXRQChr16g0501031 Helianthus annuus HOM05D001406 ORTHO05D006300 0.0e+00 1338.6 1178 60.6
Lj6g0019990 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1338.2 1176 59.9
EL10Ac3g06610 Beta vulgaris HOM05D001406 ORTHO05D006300 0.0e+00 1337.0 1183 60.4
ClCG06G005070 Citrullus lanatus HOM05D001406 ORTHO05D006300 0.0e+00 1334.3 1164 60.4
MSTRG.3907 Avicennia marina HOM05D001406 ORTHO05D006300 0.0e+00 1332.8 1196 59.3
arahy.Tifrunner.gnm1.ann1.Q4RDUH Arachis hypogaea HOM05D001406 ORTHO05D006300 0.0e+00 1331.6 1220 59.1
Migut.G00150 Erythranthe guttata HOM05D001406 ORTHO05D006300 0.0e+00 1323.9 1196 59.6
ECA232G4578 Erigeron canadensis HOM05D001406 ORTHO05D006300 0.0e+00 1322.8 1205 59.8
Peaxi162Scf00646g00226 Petunia axillaris HOM05D001406 ORTHO05D006300 0.0e+00 1322.0 1185 59.7
TPR.G26890 Trifolium pratense HOM05D001406 ORTHO05D006300 0.0e+00 1320.1 1223 58.2
PGR031G1922 Punica granatum HOM05D001406 ORTHO05D006300 0.0e+00 1319.7 1210 60.2
Eucgr.C00455 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1308.1 1249 56.4
Thhalv10024228m.g Eutrema salsugineum HOM05D001406 ORTHO05D006300 0.0e+00 1298.9 1192 59.2
BraA03t14045Z Brassica rapa HOM05D001406 ORTHO05D006300 0.0e+00 1298.5 1239 57.2
BcaC06g32972 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1297.0 1191 58.9
A03p49440 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1297.0 1189 58.8
BolC7t45276H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1297.0 1191 58.8
CARHR290420 Cardamine hirsuta HOM05D001406 ORTHO05D006300 0.0e+00 1296.2 1195 58.7
Aa31LG10G6250 Aethionema arabicum HOM05D001406 ORTHO05D006300 0.0e+00 1292.7 1195 58.7
Sp7g14340 Schrenkiella parvula HOM05D001406 ORTHO05D006300 0.0e+00 1292.3 1190 59.2
SalBow2G2741 Salvia bowleyana HOM05D001406 ORTHO05D006300 0.0e+00 1290.4 1235 56.5
THA.LOC104821780 Tarenaya hassleriana HOM05D001406 ORTHO05D006300 0.0e+00 1289.6 1201 58.2
AT4G15890 Arabidopsis thaliana HOM05D001406 ORTHO05D006300 0.0e+00 1288.9 1190 58.5
AL7G39380 Arabidopsis lyrata HOM05D001406 ORTHO05D006300 0.0e+00 1285.0 1190 58.6
Carub.0007s2577 Capsella rubella HOM05D001406 ORTHO05D006300 0.0e+00 1280.8 1189 58.6
Sc13g0003410 Simmondsia chinensis HOM05D001406 ORTHO05D006300 0.0e+00 1271.9 1051 63.0
BcaC06g33438 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1269.2 1191 58.0
Eucgr.C00460 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1261.9 1179 57.8
Nitab4.5_0000570g0200 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1250.3 1190 57.5
BcaC08g43650 Brassica carinata HOM05D001406 ORTHO05D006300 0.0e+00 1239.6 1189 57.3
Ah.04g153610 Amaranthus hybridus HOM05D001406 ORTHO05D006300 0.0e+00 1229.9 1187 56.1
Lj6g0027272 Lotus japonicus HOM05D001406 ORTHO05D006300 0.0e+00 1229.9 1192 56.5
SGA_v2.0_scaffold67G22623 Striga asiatica HOM05D001406 ORTHO05D006300 0.0e+00 1227.6 1104 58.9
C06p10680 Brassica napus HOM05D001406 ORTHO05D006300 0.0e+00 1191.8 1060 60.1
BolC6t36150H Brassica oleracea HOM05D001406 ORTHO05D006300 0.0e+00 1183.3 1071 59.5
SHI00255 Sapria himalayana HOM05D001406 ORTHO05D006300 0.0e+00 1182.5 1197 55.6
QL06p009350 Quercus lobata HOM05D001406 ORTHO05D006300 0.0e+00 1178.7 896 68.8
Prupe.1G134700 Prunus persica HOM05D001406 ORTHO05D006300 0.0e+00 1169.1 815 73.7
Lsat_1_v5_gn_6_95741 Lactuca sativa HOM05D001406 ORTHO05D006300 0.0e+00 1160.6 1229 53.9
Nitab4.5_0003466g0080 Nicotiana tabacum HOM05D001406 ORTHO05D006300 0.0e+00 1118.6 1044 58.0
COL.COLO4_13851 Corchorus olitorius HOM05D001406 ORTHO05D006300 0.0e+00 1107.8 1170 53.2
DCAR_002468 Daucus carota HOM05D001406 ORTHO05D006300 0.0e+00 1105.1 1184 51.0
Manes.03G196500 Manihot esculenta HOM05D001406 ORTHO05D006300 0.0e+00 1092.4 894 63.5
Eucgr.C00332 Eucalyptus grandis HOM05D001406 ORTHO05D006300 0.0e+00 1084.3 977 58.8
Zm00001eb410230 Zea mays HOM05D001406 ORTHO05D006300 4.4e-295 1018.5 1152 51.2
HPP92_015972 Vanilla planifolia HOM05D001406 ORTHO05D006300 3.6e-289 998.8 1006 53.4
Os12g0548100 Oryza sativa ssp. japonica HOM05D001406 ORTHO05D006300 6.4e-286 988.0 1163 50.3
CDE02G0109 Ceratophyllum demersum HOM05D001406 ORTHO05D006300 1.9e-282 976.5 1163 48.7
CsaV3_UNG225770 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.2e-265 919.8 756 64.2
Lalb_Chr18g0051641 Lupinus albus HOM05D001406 ORTHO05D006300 1.1e-258 897.5 774 59.7
Eucgr.C00337 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.3e-254 884.0 1142 47.0
MELO3C021323.2 Cucumis melo HOM05D001406 ORTHO05D006300 3.1e-248 862.8 761 59.3
unitig_37.g12399 Utricularia gibba HOM05D001406 ORTHO05D006300 6.5e-238 828.6 842 52.5
Medtr7g110590 Medicago truncatula HOM05D001406 ORTHO05D006300 1.4e-232 810.8 1039 48.8
Eucgr.C00258 Eucalyptus grandis HOM05D001406 ORTHO05D006300 1.6e-228 797.3 688 59.7
AagrBONN_evm.TU.Sc2ySwM_117.1301 Anthoceros agrestis HOM05D001406 ORTHO05D006300 5.2e-227 792.3 1246 42.3
Atru.chr4.2862 Acer truncatum HOM05D001406 ORTHO05D006300 2.8e-225 786.6 786 55.5
SMO144G0076 Selaginella moellendorffii HOM05D001406 ORTHO05D006300 6.8e-219 765.4 1116 42.7
Hma1.2p1_1185F.1_g265030 Hydrangea macrophylla HOM05D001406 ORTHO05D006300 1.3e-206 724.5 596 63.9
CsaV3_UNG044300 Cucumis sativus L. HOM05D001406 ORTHO05D006300 7.1e-192 675.6 654 55.0
Mapoly0098s0043 Marchantia polymorpha HOM05D001406 ORTHO05D006300 1.5e-189 667.9 1252 36.6
CsaV3_UNG067570 Cucumis sativus L. HOM05D001406 ORTHO05D006300 3.2e-184 650.2 500 67.6
CsaV3_UNG088690 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.6e-167 594.7 454 67.8
SEGI_32620 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 7.1e-160 569.3 988 38.5
Lalb_Chr18g0051631 Lupinus albus HOM05D001406 ORTHO05D006300 4.2e-152 543.5 405 70.1
CBR_g31398 Chara braunii HOM05D001406 ORTHO05D006300 3.4e-146 523.9 1362 30.8
MELO3C035190.2 Cucumis melo HOM05D001406 ORTHO05D006300 7.4e-141 506.1 411 65.5
C07p47490 Brassica napus HOM05D001406 ORTHO05D006300 2.6e-138 497.7 488 54.9
QL06p009358 Quercus lobata HOM05D001406 ORTHO05D006300 1.6e-119 435.3 341 68.6
SEGI_21479 Sequoiadendron giganteum HOM05D001406 ORTHO05D006300 9.1e-107 392.9 301 69.1
CsaV3_UNG067560 Cucumis sativus L. HOM05D001406 ORTHO05D006300 1.3e-97 362.5 309 60.5
QL06p009360 Quercus lobata HOM05D001406 ORTHO05D006300 3.5e-90 337.8 274 67.5
Eucgr.C00458 Eucalyptus grandis HOM05D001406 ORTHO05D006300 7.5e-85 320.1 368 51.1
Cre05.g241150 Chlamydomonas reinhardtii HOM05D001406 ORTHO05D006300 7.5e-77 293.5 916 27.5
Oeu016245.1 Olea europaea HOM05D001406 ORTHO05D006300 3.5e-66 258.1 435 40.9
PRCOL_00006258 Prasinoderma coloniale HOM05D001406 ORTHO05D006300 3.0e-65 255.0 350 41.1
QL06p009415 Quercus lobata HOM05D001406 ORTHO05D000006 7.8e-58 230.3 637 33.0
unitig_37.g12400 Utricularia gibba HOM05D001406 ORTHO05D004254 1.4e-54 219.5 245 52.2
Atru.chr4.2864 Acer truncatum HOM05D001406 ORTHO05D006300 2.7e-42 178.7 153 60.1
Atru.chr4.2866 Acer truncatum HOM05D001406 ORTHO05D006300 3.2e-35 155.2 114 64.0
Atru.chr4.2865 Acer truncatum HOM05D001406 ORTHO05D006300 3.0e-33 148.7 106 72.6
AagrBONN_evm.TU.Sc2ySwM_368.2199 Anthoceros agrestis HOM05D001406 ORTHO05D006300 6.3e-31 141.0 233 38.6
Atru.chr4.2867 Acer truncatum HOM05D001406 ORTHO05D006300 3.4e-29 135.2 82 76.8
CsaV3_UNG044290 Cucumis sativus L. HOM05D001406 ORTHO05D034998 2.5e-27 129.0 87 72.4
HPP92_015965 Vanilla planifolia HOM05D001406 ORTHO05D006300 2.1e-26 125.9 114 59.6
Eucgr.D00108 Eucalyptus grandis HOM05D001406 ORTHO05D006300 2.3e-25 122.5 182 44.0
DCAR_006102 Daucus carota HOM05D001406 ORTHO05D006300 6.3e-23 114.4 115 50.4
CsaV3_UNG075590 Cucumis sativus L. HOM05D001406 ORTHO05D034998 3.5e-13 82.0 84 48.8
CsaV3_UNG075600 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.2e-12 79.3 81 53.1
CsaV3_UNG088700 Cucumis sativus L. HOM05D001406 ORTHO05D006300 2.2e-12 79.3 81 53.1
Lsat_1_v5_gn_9_42060 Lactuca sativa HOM05D001406 ORTHO05D006300 1.4e-09 70.1 50 70.0
QL06p009199 Quercus lobata HOM05D001406 ORTHO05D337037 3.0e-09 68.9 89 43.8
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 8.8e-09 67.4 71 49.3
PRCOL_00006547 Prasinoderma coloniale HOM05D004602 ORTHO05D005906 1.3e-07 63.5 153 28.8
ClCG10G016070 Citrullus lanatus HOM05D004602 ORTHO05D005906 3.7e-07 62.0 153 26.8
HPP92_025012 Vanilla planifolia HOM05D004602 ORTHO05D005906 8.2e-07 60.8 136 25.7
Ca_26637_v3 Cicer arietinum L. HOM05D004602 ORTHO05D005906 1.1e-06 60.5 129 27.1
Cc06_g18890 Coffea canephora HOM05D004602 ORTHO05D005906 1.1e-06 60.5 136 26.5
Os07g0659500 Oryza sativa ssp. japonica HOM05D004602 ORTHO05D005906 1.1e-06 60.5 136 25.7
vmacro11427 Vaccinium macrocarpon HOM05D000021 ORTHO05D000010 1.1e-06 60.5 51 56.9
Aqoxy2G00344 Aquilegia oxysepala HOM05D004602 ORTHO05D005906 1.4e-06 60.1 150 26.0
Phvul.007G247800 Phaseolus vulgaris HOM05D004602 ORTHO05D005906 1.4e-06 60.1 129 27.1
Actinidia38152 Actinidia chinensis HOM05D004602 ORTHO05D005906 1.8e-06 59.7 135 26.7
Oeu029496.3 Olea europaea HOM05D004602 ORTHO05D005906 1.8e-06 59.7 189 25.9
Sc19g0008270 Simmondsia chinensis HOM05D004602 ORTHO05D005906 1.8e-06 59.7 135 27.4
EL10Ac3g07209 Beta vulgaris HOM05D004602 ORTHO05D005906 2.4e-06 59.3 129 26.4
Psat6g123240 Pisum sativum HOM05D004602 ORTHO05D005906 2.4e-06 59.3 139 25.2
Glyma.02G157700 Glycine max HOM05D004602 ORTHO05D005906 3.1e-06 58.9 136 25.7
ATR0745G001 Amborella trichopoda HOM05D004602 ORTHO05D005906 4.1e-06 58.5 135 27.4
Sc13g0003400 Simmondsia chinensis HOM05D001406 ORTHO05D034998 4.1e-06 58.5 59 52.5
VMungo0720G1740 Vigna mungo HOM05D004602 ORTHO05D005906 4.1e-06 58.5 161 23.6
MELO3C009773.2 Cucumis melo HOM05D004602 ORTHO05D005906 5.3e-06 58.2 153 25.5
Lalb_Chr02g0156531 Lupinus albus HOM05D004602 ORTHO05D005906 5.3e-06 58.2 129 25.6
Prupe.7G042500 Prunus persica HOM05D004602 ORTHO05D005906 5.3e-06 58.2 135 25.9
RcHm_v2.0_Chr2g0125151 Rosa chinensis HOM05D004602 ORTHO05D005906 5.3e-06 58.2 150 25.3
Duzib106G0250 Durio zibethinus HOM05D004602 ORTHO05D005906 7.0e-06 57.8 150 25.3
Lj5g0012838 Lotus japonicus HOM05D004602 ORTHO05D005906 7.0e-06 57.8 161 23.6
TAR636G3632 Trochodendron aralioides HOM05D004602 ORTHO05D005906 7.0e-06 57.8 136 25.7
Solyc10g079730.3 Solanum lycopersicum HOM05D004602 ORTHO05D005906 9.1e-06 57.4 150 26.0
PGSC0003DMG400029835 Solanum tuberosum HOM05D004602 ORTHO05D005906 9.1e-06 57.4 150 26.0
unitig_21.g20921 Utricularia gibba HOM05D004602 ORTHO05D005906 9.1e-06 57.4 129 27.9
Zm00001eb329790 Zea mays HOM05D004602 ORTHO05D005906 9.1e-06 57.4 150 24.0


User provided reference genes

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