Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1860.9 916 100.0
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1841.2 950 96.3
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 0.0e+00 1832.0 957 95.5
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1801.2 916 97.3
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 0.0e+00 1647.1 916 90.6
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 0.0e+00 1583.2 922 86.9
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 0.0e+00 1162.1 956 63.3
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 0.0e+00 1156.4 956 63.7
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 0.0e+00 1148.3 931 63.9
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 0.0e+00 1145.2 975 62.5
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 0.0e+00 1144.4 952 62.6
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 0.0e+00 1143.3 1004 60.8
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 0.0e+00 1142.5 967 61.6
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 0.0e+00 1137.5 1014 60.4
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 0.0e+00 1132.1 891 65.3
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 0.0e+00 1106.3 1011 59.5
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 0.0e+00 1104.4 956 59.5
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 0.0e+00 1096.3 956 59.6
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 0.0e+00 1094.3 952 60.9
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 0.0e+00 1093.6 1012 59.0
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 0.0e+00 1092.8 953 61.0
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 0.0e+00 1089.3 918 61.0
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 0.0e+00 1084.7 953 60.5
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 0.0e+00 1083.9 966 58.9
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 0.0e+00 1080.5 941 60.4
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 6.3e-312 1074.3 947 58.5
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 2.1e-310 1068.9 925 59.4
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 4.8e-310 1067.8 978 58.5
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 9.2e-306 1053.5 923 59.7
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 6.0e-305 1050.8 968 56.7
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 1.7e-304 1049.3 934 59.1
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 6.6e-304 1047.3 932 58.2
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 6.6e-304 1047.3 927 59.0
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 4.3e-303 1044.6 980 57.1
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 4.0e-301 1038.1 966 56.9
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 5.3e-301 1037.7 927 58.6
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 2.2e-299 1032.3 742 69.5
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 6.0e-297 1024.2 946 57.0
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 5.1e-296 1021.1 965 56.0
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 4.3e-295 1018.1 932 58.6
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 9.6e-295 1016.9 971 55.5
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 3.6e-294 1015.0 989 55.0
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 4.8e-294 1014.6 946 56.9
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 4.8e-294 1014.6 929 57.4
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 3.4e-292 1008.4 950 56.5
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 1.3e-291 1006.5 907 59.0
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 2.2e-291 1005.7 934 57.5
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 8.4e-291 1003.8 929 56.7
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 8.4e-291 1003.8 998 54.0
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 1.9e-290 1002.7 969 55.7
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 1.2e-289 1000.0 998 53.9
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 1.3e-288 996.5 900 57.8
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 5.1e-288 994.6 953 55.7
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 6.7e-288 994.2 935 56.4
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 7.4e-287 990.7 737 71.9
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 9.6e-287 990.3 994 54.2
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 2.1e-286 989.2 970 54.7
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 3.7e-286 988.4 940 57.0
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 7.6e-284 980.7 936 55.2
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 2.5e-282 975.7 756 64.4
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 7.9e-281 970.7 939 55.2
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 6.9e-277 957.6 1007 52.5
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 4.5e-276 954.9 682 68.2
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 7.6e-276 954.1 964 54.1
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 3.2e-274 948.7 924 56.1
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 2.1e-273 946.0 972 51.3
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 1.8e-272 943.0 886 56.8
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 1.5e-271 939.9 923 56.3
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 3.3e-271 938.7 931 55.5
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 7.4e-271 937.6 922 55.4
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 5.3e-269 931.4 932 55.2
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 6.9e-269 931.0 924 55.8
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 9.0e-269 930.6 804 62.4
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 1.2e-268 930.2 948 54.4
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 2.6e-268 929.1 953 54.5
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 3.8e-267 925.2 922 54.6
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 2.1e-265 919.5 929 53.9
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 6.1e-265 917.9 976 52.2
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 1.8e-264 916.4 965 52.6
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 3.1e-261 905.6 984 52.5
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 8.5e-259 897.5 964 50.1
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.6e-255 885.9 948 50.4
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 1.5e-252 876.7 922 52.8
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 5.5e-250 868.2 944 49.6
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 5.7e-239 831.6 694 59.8
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 7.7e-236 821.2 941 47.9
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 3.6e-225 785.8 920 49.2
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 5.4e-221 771.9 475 81.7
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 4.7e-217 758.8 566 65.4
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 8.0e-217 758.1 527 72.5
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.4e-216 757.3 731 57.6
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 1.1e-213 747.7 952 45.3
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 5.6e-210 735.3 553 66.4
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 9.8e-207 724.5 774 52.8
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 5.4e-205 718.8 459 76.7
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.4e-182 641.7 930 41.9
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 7.1e-181 638.6 1143 36.0
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 1.6e-180 637.5 800 43.0
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 2.3e-179 633.6 1029 38.6
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.7e-163 578.6 714 45.2
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 3.3e-162 576.6 601 51.4
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.0e-159 567.4 840 40.5
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 7.9e-156 555.4 1009 37.2
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.3e-147 527.3 782 40.8
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 2.9e-142 510.4 435 61.4
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 2.9e-142 510.4 435 61.4
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 6.5e-142 509.2 280 86.1
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.1e-140 504.2 928 35.0
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.9e-134 483.8 477 51.4
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 4.2e-133 479.9 313 72.5
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 1.8e-131 474.6 593 48.6
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-130 471.5 692 41.0
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 8.8e-123 445.7 611 42.6
Dinv31052 Davidia involucrata HOM05D004739 ORTHO05D005784 6.3e-121 439.5 476 51.9
MD09G1250200 Malus domestica HOM05D004739 ORTHO05D005784 2.7e-119 434.1 388 61.6
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 1.1e-112 412.1 359 60.2
TAR365G0620 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.3e-105 388.7 437 50.6
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.0e-103 381.3 320 63.8
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.4e-97 359.8 850 31.5
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 4.1e-96 357.1 450 45.6
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.8e-95 352.8 740 35.1
TPR.G2930 Trifolium pratense HOM05D004739 ORTHO05D005784 1.5e-93 348.6 376 50.3
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.5e-93 347.8 856 32.1
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 2.5e-77 294.7 642 33.0
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 1.4e-75 288.9 401 41.1
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 4.0e-67 260.8 156 76.3
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 2.0e-66 258.5 160 74.4
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.4e-64 252.3 173 74.0
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 4.6e-63 247.3 270 47.0
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 3.4e-58 231.1 401 36.7
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.1e-48 196.8 191 51.8
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 2.1e-47 195.3 203 53.2
SEGI_19061 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 2.3e-46 191.8 542 30.1
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 1.1e-45 189.5 721 26.1
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 3.4e-42 177.9 164 59.1
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 1.7e-41 175.6 109 80.7
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-41 175.3 163 51.5
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 5.1e-38 164.1 269 33.8
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 1.5e-37 162.5 116 70.7
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.8e-36 157.5 631 27.4
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 1.4e-35 156.0 344 32.0
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 4.1e-35 154.5 105 74.3
ClCG08G000310 Citrullus lanatus HOM05D004739 ORTHO05D005784 2.6e-34 151.8 255 42.4
Glyma.08G259766 Glycine max HOM05D004739 ORTHO05D005784 4.4e-29 134.4 107 56.1
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 1.7e-28 132.5 134 53.0
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 5.3e-27 127.5 84 66.7
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 5.3e-27 127.5 84 70.2
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 1.5e-26 125.9 86 68.6
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 7.9e-23 113.6 83 74.7
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 4.8e-20 104.4 70 71.4
CSS0015609 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.4e-19 102.8 167 39.5
Cc03_g10750 Coffea canephora HOM05D004739 ORTHO05D005784 6.5e-17 94.0 94 53.2
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 1.0e-09 70.1 53 60.4
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-09 68.9 86 44.2
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 5.5e-08 64.3 77 46.8
Prupe.1G176800 Prunus persica HOM05D000257 ORTHO05D009310 1.2e-07 63.2 117 37.6


User provided reference genes

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