Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.0e-144 515.8 264 100.0
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.5e-103 377.9 213 87.8
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.5e-103 377.5 212 88.2
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-102 377.1 213 87.8
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.0e-100 368.6 233 81.1
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 9.7e-99 364.0 238 83.2
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.1e-97 359.0 226 81.0
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.8e-81 306.6 238 69.3
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.5e-75 287.0 280 61.4
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.5e-75 287.0 166 84.9
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.6e-72 276.9 165 83.6
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.5e-56 222.6 137 82.5
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 4.6e-56 222.2 137 82.5
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 4.6e-56 222.2 137 82.5
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-54 217.6 137 81.0
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 2.5e-46 189.9 185 56.8
FAN19G2386 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-45 186.0 96 96.9
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.6e-39 165.2 76 98.7
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.8e-37 159.8 281 41.3
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 4.0e-36 156.0 161 52.8
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 2.4e-33 146.7 161 51.6
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 6.6e-31 138.7 225 40.4
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 5.6e-30 135.6 241 38.2
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 9.6e-30 134.8 176 47.2
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 9.6e-30 134.8 177 48.0
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 3.6e-29 132.9 173 48.0
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-28 131.3 161 51.6
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 9.0e-28 128.3 175 45.1
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 4.5e-27 125.9 175 43.4
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.6e-27 125.2 163 49.7
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.2e-26 123.6 158 51.3
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 1.4e-25 120.9 107 52.3
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 4.2e-25 119.4 227 38.8
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 3.9e-23 112.8 139 43.2
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.5e-22 110.9 194 42.8
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 2.8e-21 106.7 93 60.2
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 4.8e-21 105.9 65 66.2
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 1.8e-20 104.0 174 34.5
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 2.4e-20 103.6 204 37.7
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 1.5e-19 100.9 206 38.3
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 2.0e-19 100.5 167 37.1
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 4.5e-19 99.4 154 42.2
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 2.2e-18 97.1 135 39.3
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 1.1e-17 94.7 64 71.9
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.4e-17 94.4 122 44.3
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 5.5e-17 92.4 177 38.4
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 5.5e-17 92.4 154 44.2
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 7.1e-17 92.0 206 35.0
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 7.1e-17 92.0 206 35.0
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.3e-15 87.8 113 44.2
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 1.3e-15 87.8 64 70.3
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 3.9e-15 86.3 177 35.6
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 1.1e-14 84.7 175 36.6
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 4.8e-13 79.3 143 36.4
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 8.2e-13 78.6 190 35.3
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 1.8e-12 77.4 81 58.0
FvH4_4g16141 Fragaria vesca HOM05D003406 ORTHO05D196757 1.8e-12 77.4 71 69.0
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 1.8e-12 77.4 71 53.5
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 1.2e-11 74.7 80 58.8
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 1.2e-11 74.7 80 58.8
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 3.4e-11 73.2 80 60.0
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 3.4e-11 73.2 80 60.0
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 4.5e-11 72.8 77 61.0
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 4.5e-11 72.8 80 60.0
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 4.5e-11 72.8 80 58.8
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 4.5e-11 72.8 80 60.0
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 4.5e-11 72.8 80 58.8
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 4.5e-11 72.8 80 58.8
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 4.5e-11 72.8 80 58.8
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 5.9e-11 72.4 77 59.7
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 5.9e-11 72.4 77 59.7
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 7.6e-11 72.0 80 57.5
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 1.0e-10 71.6 80 57.5
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 1.0e-10 71.6 80 58.8
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 1.0e-10 71.6 80 58.8
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 1.0e-10 71.6 80 58.8
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 1.0e-10 71.6 57 64.9
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 1.3e-10 71.2 80 57.5
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 1.3e-10 71.2 80 56.2
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 1.3e-10 71.2 80 57.5
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 1.3e-10 71.2 80 56.2
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 1.7e-10 70.9 81 59.3
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 1.7e-10 70.9 81 59.3
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 1.7e-10 70.9 81 59.3
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 1.7e-10 70.9 76 59.2
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 1.7e-10 70.9 76 60.5
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 1.7e-10 70.9 96 51.0
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 2.2e-10 70.5 80 56.2
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 2.2e-10 70.5 76 59.2
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 2.2e-10 70.5 156 41.0
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 2.2e-10 70.5 80 57.5
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 2.2e-10 70.5 80 56.2
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 2.2e-10 70.5 81 58.0
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 2.2e-10 70.5 76 59.2
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 2.9e-10 70.1 152 40.8
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 2.9e-10 70.1 80 57.5
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 3.8e-10 69.7 96 47.9
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 3.8e-10 69.7 79 57.0
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 3.8e-10 69.7 80 56.2
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 3.8e-10 69.7 98 50.0
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 5.0e-10 69.3 81 58.0
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 5.0e-10 69.3 79 57.0
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 5.0e-10 69.3 83 51.8
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 5.0e-10 69.3 80 57.5
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 6.5e-10 68.9 80 56.2
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 6.5e-10 68.9 80 56.2
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 6.5e-10 68.9 80 56.2
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 6.5e-10 68.9 80 56.2
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 6.5e-10 68.9 80 56.2
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 6.5e-10 68.9 80 56.2
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 6.5e-10 68.9 81 53.1
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 6.5e-10 68.9 76 57.9
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 8.5e-10 68.6 77 57.1
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 8.5e-10 68.6 121 43.0
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 8.5e-10 68.6 75 58.7
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 8.5e-10 68.6 75 58.7
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 8.5e-10 68.6 77 57.1
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 1.1e-09 68.2 79 55.7
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 1.1e-09 68.2 80 56.2
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 1.4e-09 67.8 80 57.5
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 1.4e-09 67.8 80 57.5
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 1.4e-09 67.8 80 57.5
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 1.4e-09 67.8 80 57.5
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 1.4e-09 67.8 80 57.5
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 1.4e-09 67.8 80 57.5
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.4e-09 67.8 79 55.7
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.4e-09 67.8 79 55.7
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 1.9e-09 67.4 114 42.1
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 1.9e-09 67.4 80 56.2
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 2.5e-09 67.0 74 58.1
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.5e-09 67.0 156 40.4
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 2.5e-09 67.0 74 58.1
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 3.2e-09 66.6 80 56.2
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 3.2e-09 66.6 51 62.7
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 3.2e-09 66.6 103 49.5
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 3.2e-09 66.6 110 42.7
SEGI_32752 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 5.5e-09 65.9 49 57.1
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 7.2e-09 65.5 80 53.8
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 7.2e-09 65.5 80 55.0
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 7.2e-09 65.5 80 55.0
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 7.2e-09 65.5 80 55.0
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 9.3e-09 65.1 79 53.2
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 9.3e-09 65.1 73 56.2
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.2e-08 64.7 73 56.2
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 1.6e-08 64.3 74 55.4
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 1.6e-08 64.3 49 55.1
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 2.1e-08 63.9 94 42.6
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 3.6e-08 63.2 48 56.2
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 4.6e-08 62.8 121 39.7
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 4.6e-08 62.8 75 54.7
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 6.1e-08 62.4 76 52.6
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 6.1e-08 62.4 76 52.6
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 7.9e-08 62.0 160 38.8
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 7.9e-08 62.0 153 37.9
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 1.3e-07 61.2 79 51.9
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 1.1e-06 58.2 68 57.4
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 3.3e-06 56.6 76 52.6


User provided reference genes

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