Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 2.1e-125 453.4 452 100.0
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 7.4e-123 444.9 456 98.0
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 6.5e-119 431.8 457 95.8
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 2.2e-111 406.8 454 94.5
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 2.9e-111 406.4 457 86.4
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 1.2e-96 357.8 366 83.9
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 1.0e-79 301.6 365 71.5
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 3.1e-76 290.0 376 64.1
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 2.6e-75 287.0 472 76.1
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 2.4e-73 280.4 375 60.3
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 7.0e-73 278.9 379 76.3
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 7.8e-72 275.4 362 67.7
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 1.7e-71 274.2 369 57.2
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 2.3e-71 273.9 369 60.7
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 8.6e-71 271.9 367 58.6
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 1.1e-70 271.6 380 70.5
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 1.1e-70 271.6 383 62.4
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 1.9e-70 270.8 369 74.3
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 1.9e-70 270.8 373 75.3
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 9.5e-70 268.5 372 55.9
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 1.6e-69 267.7 368 71.2
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 1.6e-69 267.7 367 59.7
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 2.8e-69 266.9 369 64.0
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 6.2e-69 265.8 364 55.5
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 8.1e-69 265.4 366 57.4
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 3.1e-68 263.5 365 54.5
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 1.5e-67 261.2 371 64.2
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 2.0e-67 260.8 362 59.1
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 7.5e-67 258.8 363 62.5
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 1.3e-66 258.1 391 57.3
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 1.7e-66 257.7 375 70.1
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.7e-66 257.7 366 53.8
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 6.4e-66 255.8 366 49.5
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 6.4e-66 255.8 365 61.6
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 8.3e-66 255.4 367 75.2
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 2.1e-64 250.8 370 64.6
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.1e-64 250.8 366 63.1
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 6.0e-64 249.2 359 60.7
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 7.8e-64 248.8 364 54.9
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 1.3e-63 248.1 371 59.8
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 2.3e-63 247.3 375 69.9
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 2.3e-63 247.3 375 69.9
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 3.0e-63 246.9 365 51.5
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 3.0e-63 246.9 377 49.6
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 3.9e-63 246.5 368 51.1
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 3.9e-63 246.5 368 51.4
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 3.9e-63 246.5 464 45.7
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 1.5e-62 244.6 384 54.4
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 2.5e-62 243.8 387 55.6
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 2.5e-62 243.8 368 69.6
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 2.5e-62 243.8 331 67.1
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 5.6e-62 242.7 367 69.5
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 5.6e-62 242.7 382 54.2
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 7.3e-62 242.3 365 62.5
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 1.2e-61 241.5 371 56.9
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 2.8e-61 240.4 369 52.0
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 3.6e-61 240.0 367 69.5
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 8.1e-61 238.8 361 48.8
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 1.1e-60 238.4 371 53.6
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 1.4e-60 238.0 368 45.1
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 1.4e-60 238.0 384 56.5
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 1.8e-60 237.7 357 55.5
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 4.0e-60 236.5 366 49.7
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 4.0e-60 236.5 367 58.0
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 5.2e-60 236.1 367 59.7
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 6.8e-60 235.7 370 58.6
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 6.8e-60 235.7 385 62.1
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 2.6e-59 233.8 463 57.7
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.6e-59 233.8 367 61.0
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 4.4e-59 233.0 365 60.8
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 4.4e-59 233.0 374 57.5
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 7.6e-59 232.3 364 53.3
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 1.7e-58 231.1 396 55.6
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 2.9e-58 230.3 474 47.3
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 8.4e-58 228.8 378 41.0
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 1.4e-57 228.0 462 51.5
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 2.4e-57 227.3 142 83.8
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 2.4e-57 227.3 365 54.8
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 3.2e-57 226.9 367 59.7
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 4.2e-57 226.5 362 45.3
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 5.4e-57 226.1 384 54.7
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 1.6e-56 224.6 367 56.9
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 3.5e-56 223.4 361 51.8
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.5e-56 223.4 361 58.4
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 4.6e-56 223.0 361 66.2
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 7.8e-56 222.2 360 51.1
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 7.8e-56 222.2 319 54.2
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 1.3e-55 221.5 369 60.4
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 1.3e-55 221.5 366 47.8
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 1.3e-55 221.5 377 65.0
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 1.3e-55 221.5 401 60.3
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 3.0e-55 220.3 371 53.4
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 5.1e-55 219.5 362 47.2
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 8.7e-55 218.8 373 55.5
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 1.5e-54 218.0 338 62.7
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 1.9e-54 217.6 463 55.5
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 2.5e-54 217.2 459 47.3
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 3.1e-52 210.3 369 58.3
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 3.1e-52 210.3 365 46.0
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 4.0e-52 209.9 369 53.4
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 6.9e-52 209.1 322 56.2
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 2.0e-51 207.6 412 59.7
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 7.6e-51 205.7 366 57.9
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 7.6e-51 205.7 366 57.9
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 1.7e-50 204.5 364 55.5
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 8.4e-50 202.2 261 59.8
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.1e-49 201.8 348 57.5
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 4.2e-49 199.9 253 53.4
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 7.1e-49 199.1 411 58.4
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 1.6e-48 198.0 393 51.4
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 2.7e-48 197.2 355 53.5
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 3.5e-48 196.8 140 75.0
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 3.5e-48 196.8 343 55.4
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 6.0e-48 196.1 325 52.9
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 3.0e-47 193.7 402 45.5
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 3.9e-47 193.4 264 51.5
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 8.7e-47 192.2 368 50.3
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 8.7e-47 192.2 363 62.3
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 1.1e-46 191.8 230 64.8
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.5e-46 191.4 348 57.8
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 2.5e-46 190.7 366 45.1
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 8.1e-45 185.7 334 50.3
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 3.4e-43 180.3 207 54.6
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 3.4e-43 180.3 362 38.7
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 4.5e-43 179.9 379 45.4
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 7.6e-43 179.1 268 59.3
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 7.6e-43 179.1 344 52.0
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 1.7e-42 177.9 386 48.7
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 2.1e-40 171.0 139 66.2
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 6.0e-40 169.5 373 49.9
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 6.0e-40 169.5 364 52.2
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 6.7e-39 166.0 363 44.1
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 1.8e-36 157.9 186 53.2
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 2.4e-36 157.5 106 68.9
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 2.6e-35 154.1 141 61.7
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 7.6e-35 152.5 136 61.0
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 6.4e-34 149.4 136 60.3
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.3e-29 135.2 101 72.3
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 1.2e-27 128.6 282 46.1
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 2.0e-27 127.9 302 37.4
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 2.7e-24 117.5 257 38.1
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 3.0e-23 114.0 79 69.6
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 1.6e-21 108.2 83 66.3
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 6.3e-21 106.3 83 63.9
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 6.3e-21 106.3 260 46.2
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 1.8e-20 104.8 75 70.7
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 3.1e-20 104.0 257 45.5
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 1.7e-18 98.2 50 84.0
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 4.2e-17 93.6 112 42.9
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 2.5e-09 67.8 67 58.2
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 5.5e-09 66.6 35 74.3
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 4.7e-08 63.5 92 40.2
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 6.1e-08 63.2 240 40.4
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 1.8e-07 61.6 92 39.1
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 2.3e-07 61.2 34 67.6
Os09g0299500 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 2.3e-07 61.2 127 35.4
SalBow1G6014 Salvia bowleyana HOM05D005264 ORTHO05D005428 3.0e-07 60.8 92 38.0
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 8.8e-07 59.3 33 66.7
Mapoly0154s0004 Marchantia polymorpha HOM05D005264 ORTHO05D005428 1.5e-06 58.5 33 66.7
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 3.3e-06 57.4 92 35.9
SMO134G0144 Selaginella moellendorffii HOM05D005264 ORTHO05D005428 5.7e-06 56.6 32 62.5
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 7.4e-06 56.2 31 67.7
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 9.7e-06 55.8 33 60.6
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 9.7e-06 55.8 92 34.8
Phvul.011G032100 Phaseolus vulgaris HOM05D005264 ORTHO05D005428 9.7e-06 55.8 44 54.5
VMungo1127G0108 Vigna mungo HOM05D005264 ORTHO05D005428 9.7e-06 55.8 44 54.5


User provided reference genes

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