Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 8.2e-182 640.2 306 100.0
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 4.5e-180 634.4 306 99.3
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.9e-170 602.4 305 95.1
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.9e-170 602.4 305 95.1
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 3.9e-168 594.7 307 92.5
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.9e-167 592.4 306 94.1
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 2.4e-141 505.8 309 80.3
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 6.8e-136 487.6 320 75.3
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 2.8e-134 482.3 312 76.0
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 4.5e-132 474.9 311 74.6
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 4.5e-132 474.9 311 74.6
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 4.5e-132 474.9 311 74.6
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 4.7e-129 464.9 304 74.3
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 1.5e-127 459.9 304 74.3
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 2.2e-126 456.1 313 69.3
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 1.1e-125 453.8 310 70.0
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 2.4e-125 452.6 304 71.7
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 1.0e-123 447.2 309 69.9
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 2.9e-123 445.7 315 69.5
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 8.6e-123 444.1 304 70.1
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 2.1e-121 439.5 312 68.3
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 2.8e-121 439.1 297 71.7
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 1.8e-120 436.4 300 69.0
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 5.2e-120 434.9 310 68.1
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 5.8e-119 431.4 290 71.4
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 7.5e-119 431.0 311 66.9
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 9.8e-119 430.6 297 70.7
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 2.9e-118 429.1 307 68.1
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 4.9e-118 428.3 288 71.9
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 4.1e-117 425.2 298 67.4
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 2.0e-116 422.9 299 68.2
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 4.6e-116 421.8 299 67.9
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 4.6e-116 421.8 302 66.6
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 6.0e-116 421.4 281 69.8
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 6.0e-116 421.4 299 68.2
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 1.0e-115 420.6 291 71.5
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 3.9e-115 418.7 313 65.2
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 3.9e-115 418.7 311 66.6
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 8.6e-115 417.5 307 64.8
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 8.6e-115 417.5 273 71.8
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 8.6e-115 417.5 270 71.9
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.9e-114 416.4 298 66.8
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 4.3e-114 415.2 292 69.2
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 9.5e-114 414.1 301 66.1
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 1.2e-113 413.7 285 68.1
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 2.1e-113 412.9 307 65.5
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 2.1e-113 412.9 310 63.9
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 2.8e-113 412.5 282 67.0
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 3.6e-113 412.1 303 66.0
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 3.6e-113 412.1 291 67.7
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 6.2e-113 411.4 307 64.8
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 6.2e-113 411.4 272 69.9
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 1.8e-112 409.8 301 64.8
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 1.8e-112 409.8 307 64.8
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 1.8e-112 409.8 316 64.9
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 2.3e-112 409.5 279 68.8
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 2.3e-112 409.5 298 65.8
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 3.1e-112 409.1 312 65.1
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 3.1e-112 409.1 302 64.9
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 3.1e-112 409.1 317 64.0
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 6.8e-112 407.9 294 66.3
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 8.9e-112 407.5 298 65.8
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 1.2e-111 407.1 286 68.2
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 1.2e-111 407.1 309 64.4
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.2e-111 407.1 305 63.9
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 2.0e-111 406.4 271 69.4
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 2.0e-111 406.4 262 73.3
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 3.4e-111 405.6 333 62.5
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 3.4e-111 405.6 288 66.0
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 7.5e-111 404.4 333 58.9
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 9.8e-111 404.1 288 64.9
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 1.3e-110 403.7 304 64.1
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 1.3e-110 403.7 304 64.1
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 1.3e-110 403.7 304 64.1
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 1.7e-110 403.3 303 64.7
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 2.2e-110 402.9 302 64.9
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 4.9e-110 401.7 303 64.7
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 6.4e-110 401.4 292 64.7
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 8.3e-110 401.0 306 64.1
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 1.4e-109 400.2 292 64.4
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 1.4e-109 400.2 326 59.8
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 5.4e-109 398.3 262 67.9
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 7.0e-109 397.9 319 63.6
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 7.0e-109 397.9 238 73.1
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 2.3e-107 392.9 271 65.7
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 3.0e-107 392.5 271 64.9
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 5.1e-107 391.7 326 58.3
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 7.3e-106 387.9 296 63.9
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 2.8e-105 386.0 291 64.3
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 5.8e-103 378.3 308 60.7
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 3.7e-102 375.6 310 60.0
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 4.9e-102 375.2 307 60.3
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.2e-100 370.5 294 59.5
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 2.1e-100 369.8 219 74.9
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 6.0e-100 368.2 291 59.8
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 6.0e-100 368.2 234 72.6
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 6.0e-100 368.2 274 62.4
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 3.0e-99 365.9 219 74.9
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 1.9e-98 363.2 298 58.1
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 2.5e-98 362.8 235 70.6
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 2.5e-98 362.8 298 58.4
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 7.3e-98 361.3 302 57.9
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 9.5e-98 360.9 272 61.4
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 2.1e-97 359.8 298 57.7
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 6.2e-97 358.2 267 62.2
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 6.2e-97 358.2 239 66.9
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 8.1e-97 357.8 210 77.6
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 1.8e-96 356.7 252 66.3
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 3.1e-96 355.9 303 57.1
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 1.2e-95 354.0 199 81.4
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 5.8e-95 351.7 295 56.9
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 9.9e-95 350.9 232 67.2
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 2.4e-93 346.3 284 56.7
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 2.4e-93 346.3 284 58.8
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 4.2e-93 345.5 233 67.0
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 7.1e-93 344.7 232 68.5
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 9.2e-93 344.4 284 56.0
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 9.2e-93 344.4 237 65.8
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.6e-92 343.6 291 57.7
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 2.7e-92 342.8 284 56.0
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 3.5e-92 342.4 282 56.4
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 5.1e-91 338.6 293 57.0
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 1.1e-90 337.4 295 55.6
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 2.5e-90 336.3 219 65.8
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 3.3e-90 335.9 243 63.4
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 4.3e-90 335.5 300 55.7
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 7.3e-90 334.7 294 57.8
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 3.4e-87 325.9 197 73.6
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 3.4e-87 325.9 228 62.3
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 1.3e-86 323.9 294 56.8
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 1.7e-86 323.6 294 56.8
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 1.7e-86 323.6 294 56.8
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 1.7e-86 323.6 294 56.8
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 1.7e-86 323.6 294 56.5
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 2.9e-86 322.8 299 52.5
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 4.6e-84 315.5 294 56.5
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 1.3e-83 313.9 228 63.6
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 7.3e-82 308.1 300 57.7
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 2.8e-81 306.2 284 55.3
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 1.4e-80 303.9 228 61.4
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 4.0e-80 302.4 253 60.1
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 3.5e-76 289.3 221 60.2
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.3e-73 280.8 298 53.0
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 8.1e-73 278.1 294 49.0
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 1.8e-72 276.9 199 64.8
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 1.8e-72 276.9 240 54.2
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 2.0e-71 273.5 158 77.2
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 4.5e-71 272.3 229 54.1
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 9.3e-69 264.6 257 50.2
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 1.2e-68 264.2 217 57.1
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 4.3e-66 255.8 243 51.0
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 2.1e-65 253.4 239 50.6
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 2.8e-65 253.1 229 52.0
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.8e-64 250.4 227 52.4
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 2.0e-63 246.9 172 68.0
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 2.0e-63 246.9 294 49.3
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 1.7e-62 243.8 228 49.1
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 2.1e-60 236.9 226 50.0
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 4.6e-60 235.7 163 65.6
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 6.1e-60 235.3 229 48.0
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 1.4e-56 224.2 223 47.5
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 1.8e-56 223.8 246 45.5
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 1.2e-55 221.1 150 69.3
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 8.5e-54 214.9 130 72.3
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 1.9e-53 213.8 238 45.8
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 2.5e-53 213.4 232 47.8
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 5.1e-51 205.7 229 45.9
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 4.8e-49 199.1 227 42.7
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 5.9e-47 192.2 317 35.0
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 5.9e-47 192.2 152 58.6
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.8e-43 180.6 109 71.6
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 2.3e-35 153.7 96 66.7
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 8.8e-35 151.8 87 77.0
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 8.8e-27 125.2 92 62.0
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 3.1e-16 90.1 49 75.5
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 1.5e-13 81.3 74 48.6
BcaC09g50623 Brassica carinata HOM05D003931 ORTHO05D004577 9.5e-13 78.6 95 45.3
unitig_26.g9959 Utricularia gibba HOM05D001404 ORTHO05D026306 5.4e-08 62.8 43 65.1


User provided reference genes

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