Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 0.0e+00 1754.6 939 100.0
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 0.0e+00 1677.5 963 93.1
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 0.0e+00 1599.7 961 89.8
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 0.0e+00 1515.4 862 95.8
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 0.0e+00 1342.0 1027 73.7
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 0.0e+00 1308.5 724 97.4
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 5.5e-221 771.9 1048 46.9
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 2.0e-215 753.4 1008 48.0
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 1.4e-187 661.0 748 51.5
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 3.6e-180 636.3 977 43.5
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 6.6e-174 615.5 924 43.3
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 5.4e-168 595.9 979 41.8
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 7.8e-167 592.0 999 40.9
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 1.9e-165 587.4 988 40.7
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 1.1e-163 581.6 979 39.8
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 5.4e-160 569.3 976 39.8
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.2e-159 568.2 978 39.1
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 2.1e-159 567.4 974 39.0
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 2.7e-159 567.0 948 41.2
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 1.6e-156 557.8 974 38.9
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 1.6e-156 557.8 974 38.9
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 1.6e-156 557.8 977 38.4
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 2.1e-156 557.4 970 38.4
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 3.1e-155 553.5 951 40.0
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 4.4e-154 549.7 965 39.8
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 7.6e-154 548.9 972 38.9
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 3.8e-153 546.6 969 39.0
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 3.2e-152 543.5 978 39.3
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 1.6e-151 541.2 959 39.6
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 6.0e-151 539.3 984 37.4
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 1.3e-150 538.1 951 37.7
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.9e-149 534.3 931 38.7
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 2.8e-148 530.4 953 38.5
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 6.2e-148 529.3 979 37.6
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 8.1e-148 528.9 953 37.6
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 9.0e-147 525.4 975 38.1
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.6e-146 523.9 938 38.7
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 7.6e-146 522.3 978 38.3
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.7e-145 521.2 981 38.4
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 1.3e-142 511.5 950 36.3
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 2.1e-140 504.2 959 36.6
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 4.8e-140 503.1 965 36.8
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 4.5e-138 496.5 975 36.3
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 4.5e-138 496.5 950 37.6
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.3e-137 495.0 966 36.6
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 1.3e-137 495.0 985 36.1
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.4e-136 491.5 969 36.5
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 2.7e-135 487.3 969 36.4
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 4.6e-135 486.5 970 36.7
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 4.6e-135 486.5 963 38.6
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 1.3e-132 478.4 972 36.4
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 1.0e-129 468.8 976 35.9
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 8.4e-129 465.7 974 35.6
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 8.4e-129 465.7 980 35.7
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 7.9e-127 459.1 963 36.3
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 8.7e-126 455.7 971 34.8
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 2.2e-124 451.1 932 35.5
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 4.6e-119 433.3 982 33.8
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 1.8e-118 431.4 918 35.2
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 9.7e-117 425.6 965 33.7
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 1.4e-115 421.8 970 34.4
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.4e-115 421.0 700 39.3
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 9.1e-115 419.1 950 34.0
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 5.9e-114 416.4 978 32.8
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 1.7e-113 414.8 968 33.9
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 3.8e-113 413.7 976 33.5
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 8.5e-113 412.5 963 35.2
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 1.6e-111 408.3 972 32.8
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 2.7e-111 407.5 958 33.0
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 7.9e-111 406.0 958 33.1
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 1.4e-110 405.2 959 32.1
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.3e-110 404.4 909 34.2
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 6.7e-110 402.9 944 32.9
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.1e-109 402.1 969 33.5
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 2.6e-109 401.0 934 32.4
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 1.7e-108 398.3 550 43.6
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 3.7e-108 397.1 964 34.4
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 6.3e-108 396.4 956 32.1
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 1.1e-107 395.6 976 32.4
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 1.6e-106 391.7 987 32.8
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 1.0e-105 389.0 949 32.1
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 1.3e-105 388.7 982 33.0
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 2.7e-103 380.9 1012 31.8
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 4.7e-103 380.2 961 31.9
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 7.5e-101 372.9 935 31.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 6.3e-100 369.8 978 30.2
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 3.5e-98 364.0 974 32.6
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 1.1e-96 359.0 871 33.9
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 7.0e-91 339.7 681 37.6
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 5.9e-90 336.7 448 45.3
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 1.3e-89 335.5 920 30.5
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 9.4e-88 329.3 981 29.1
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 8.8e-86 322.8 424 44.3
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 9.8e-85 319.3 971 28.2
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 3.8e-81 307.4 452 41.6
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 8.6e-81 306.2 696 34.1
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 2.5e-80 304.7 740 34.2
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 4.3e-80 303.9 941 28.7
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 6.1e-79 300.1 634 34.5
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 8.0e-79 299.7 496 39.1
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 8.0e-79 299.7 434 42.2
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 6.8e-78 296.6 460 42.2
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 2.2e-76 291.6 641 33.9
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 4.9e-76 290.4 489 40.3
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 8.3e-76 289.7 430 40.2
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 8.3e-76 289.7 430 40.2
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 1.1e-75 289.3 488 39.3
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 1.8e-75 288.5 477 40.3
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 9.2e-75 286.2 976 27.7
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 5.0e-73 280.4 434 41.7
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 1.9e-72 278.5 433 40.9
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 4.3e-72 277.3 438 40.9
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 5.6e-72 276.9 434 41.2
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 4.7e-71 273.9 435 41.6
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.8e-70 271.9 422 40.3
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 2.0e-69 268.5 768 31.6
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 1.1e-67 262.7 960 26.5
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.9e-64 251.9 731 30.5
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 3.3e-64 251.1 972 26.7
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.4e-62 245.7 750 30.8
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.4e-62 245.7 761 30.7
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.3e-62 245.0 659 32.2
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 2.0e-61 241.9 754 30.9
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 4.4e-61 240.7 733 30.8
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 4.4e-61 240.7 738 30.8
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 3.2e-59 234.6 802 28.8
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 4.6e-58 230.7 672 31.5
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 6.6e-57 226.9 749 29.2
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 6.6e-57 226.9 286 49.3
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 1.8e-54 218.8 761 29.2
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 1.4e-51 209.1 442 32.6
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 1.3e-49 202.6 418 33.5
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.3e-49 201.8 403 36.5
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.5e-48 198.4 498 32.1
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 3.3e-48 198.0 954 24.7
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 2.1e-47 195.3 278 45.3
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 6.8e-46 190.3 583 28.6
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.4e-45 188.0 190 54.7
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.6e-42 179.1 907 26.1
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 7.8e-42 176.8 519 28.3
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 1.0e-41 176.4 943 23.6
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 2.3e-41 175.3 565 29.6
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.5e-40 172.6 417 33.6
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 1.2e-37 162.9 166 47.6
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 5.6e-32 144.1 364 34.3
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 3.5e-26 124.8 381 31.5
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 8.7e-25 120.2 75 70.7
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 7.6e-21 107.1 155 38.1
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.4e-19 102.8 103 50.5
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 5.5e-19 100.9 77 61.0
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 6.0e-18 97.4 642 21.8
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.0e-17 96.7 121 44.6
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 4.8e-15 87.8 483 22.8
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.5e-13 82.8 72 43.1
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 6.5e-12 77.4 402 22.4
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.1e-11 76.6 70 47.1
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 5.5e-11 74.3 192 25.0
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 3.0e-09 68.6 84 39.3
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.0e-09 68.6 71 33.8
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 2.5e-08 65.5 108 33.3
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 2.8e-07 62.0 79 44.3
Nn7g37184 Nelumbo nucifera HOM05D007667 ORTHO05D001109 2.8e-07 62.0 39 71.8
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 1.1e-06 60.1 404 21.5
Pp3c1_860 Physcomitrium patens HOM05D003353 ORTHO05D003751 2.4e-06 58.9 70 32.9
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 3.1e-06 58.5 64 40.6


User provided reference genes

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