Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G1212 Fragaria x ananassa HOM05D003481 ORTHO05D004001 6.9e-92 340.9 205 100.0
FvH4_5g17630 Fragaria vesca HOM05D003481 ORTHO05D004001 1.0e-87 327.0 210 96.2
FAN27G0233 Fragaria x ananassa HOM05D003481 ORTHO05D004001 6.2e-85 317.8 210 88.6
FAN10G3643 Fragaria x ananassa HOM05D003481 ORTHO05D004001 5.3e-84 314.7 210 92.9
FvH4_4g15480 Fragaria vesca HOM05D003481 ORTHO05D004001 6.9e-84 314.3 210 93.3
FAN18G3112 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.1e-81 307.0 214 90.7
FvH4_4g15181 Fragaria vesca HOM05D003481 ORTHO05D004001 2.4e-68 262.7 159 86.2
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 2.0e-46 189.9 153 83.7
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.0e-46 189.9 153 83.0
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.8e-44 183.3 152 85.5
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 6.9e-44 181.4 154 85.1
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 9.1e-44 181.0 152 85.5
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 1.0e-39 167.5 151 64.2
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 5.5e-33 145.2 144 56.9
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 9.4e-33 144.4 144 57.6
Manes.03G070216 Manihot esculenta HOM05D003481 ORTHO05D004001 1.1e-28 131.0 99 65.7
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 4.5e-27 125.6 101 65.3
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 6.5e-26 121.7 101 63.4
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 8.5e-26 121.3 99 64.6
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 1.1e-25 120.9 101 61.4
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 1.5e-25 120.6 99 62.6
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 1.9e-25 120.2 94 67.0
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 1.9e-25 120.2 94 67.0
Lj1A1155T51 Lonicera japonica HOM05D003481 ORTHO05D004001 4.2e-25 119.0 101 60.4
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 2.7e-24 116.3 97 60.8
Cpa.g.sc192.16 Carica papaya HOM05D003481 ORTHO05D004001 3.6e-24 115.9 93 65.6
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 6.1e-24 115.2 97 61.9
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 6.1e-24 115.2 97 60.8
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 8.0e-24 114.8 90 63.3
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 8.0e-24 114.8 93 64.5
Haze_05983 Corylus avellana HOM05D003481 ORTHO05D004001 8.0e-24 114.8 99 62.6
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 8.0e-24 114.8 99 57.6
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 1.4e-23 114.0 97 61.9
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 1.4e-23 114.0 97 61.9
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 1.4e-23 114.0 97 61.9
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 1.8e-23 113.6 97 59.8
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 2.3e-23 113.2 101 58.4
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 2.3e-23 113.2 99 61.6
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 2.3e-23 113.2 94 63.8
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 3.0e-23 112.8 94 63.8
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 4.0e-23 112.5 90 61.1
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 4.0e-23 112.5 90 61.1
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 6.8e-23 111.7 94 63.8
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 6.8e-23 111.7 104 55.8
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 6.8e-23 111.7 100 63.0
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 6.8e-23 111.7 100 63.0
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 8.8e-23 111.3 98 61.2
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 1.5e-22 110.5 90 60.0
CSS0036853 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 2.6e-22 109.8 88 63.6
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 3.4e-22 109.4 114 52.6
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 4.4e-22 109.0 101 55.4
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 1.7e-21 107.1 112 53.6
arahy.Tifrunner.gnm1.ann1.R9RUHP Arachis hypogaea HOM05D003481 ORTHO05D004001 1.7e-21 107.1 112 53.6
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 1.7e-21 107.1 99 55.6
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 4.8e-21 105.5 111 55.9
Actinidia29310 Actinidia chinensis HOM05D003481 ORTHO05D004001 2.4e-20 103.2 111 55.0
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 2.4e-20 103.2 96 60.4
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 2.4e-20 103.2 86 58.1
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 7.0e-20 101.7 109 52.3
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 7.0e-20 101.7 101 55.4
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 9.1e-20 101.3 111 49.5
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 1.2e-19 100.9 95 53.7
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 2.0e-19 100.1 96 59.4
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 2.0e-19 100.1 102 56.9
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 2.0e-19 100.1 99 50.5
TAR624G0988 Trochodendron aralioides HOM05D003481 ORTHO05D004001 2.0e-19 100.1 105 51.4
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 2.7e-19 99.8 117 52.1
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 4.5e-19 99.0 108 51.9
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 5.9e-19 98.6 112 52.7
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 7.7e-19 98.2 109 52.3
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 7.7e-19 98.2 96 61.5
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 1.7e-18 97.1 95 52.6
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 3.8e-18 95.9 94 56.4
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 5.0e-18 95.5 94 56.4
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 5.0e-18 95.5 101 56.4
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 5.0e-18 95.5 99 54.5
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 6.5e-18 95.1 95 50.5
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 6.5e-18 95.1 98 59.2
Peaxi162Scf00267g00085 Petunia axillaris HOM05D003481 ORTHO05D004001 6.5e-18 95.1 97 58.8
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 6.5e-18 95.1 101 53.5
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 1.1e-17 94.4 94 55.3
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 1.1e-17 94.4 97 53.6
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 1.5e-17 94.0 94 55.3
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 1.5e-17 94.0 109 53.2
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 1.5e-17 94.0 97 52.6
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 1.5e-17 94.0 98 58.2
Solyc02g030100.4 Solanum lycopersicum HOM05D003481 ORTHO05D004001 1.9e-17 93.6 104 54.8
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 1.9e-17 93.6 97 56.7
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 2.5e-17 93.2 95 54.7
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 2.5e-17 93.2 97 58.8
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 2.5e-17 93.2 103 54.4
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 2.5e-17 93.2 104 49.0
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 5.5e-17 92.0 94 57.4
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 5.5e-17 92.0 94 57.4
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 7.2e-17 91.7 92 56.5
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 1.2e-16 90.9 94 56.4
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 1.2e-16 90.9 101 48.5
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 1.2e-16 90.9 100 55.0
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 1.2e-16 90.9 100 55.0
ATR1132G122 Amborella trichopoda HOM05D003481 ORTHO05D004001 1.6e-16 90.5 96 50.0
Oeu051246.1 Olea europaea HOM05D003481 ORTHO05D004001 1.6e-16 90.5 94 57.4
BcaNung07304 Brassica carinata HOM05D003481 ORTHO05D004001 2.1e-16 90.1 92 54.3
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 2.8e-16 89.7 104 53.8
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 3.6e-16 89.4 94 57.4
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 4.7e-16 89.0 144 43.1
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 4.7e-16 89.0 144 43.8
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 4.7e-16 89.0 144 43.8
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 4.7e-16 89.0 110 47.3
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 6.1e-16 88.6 95 54.7
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 8.0e-16 88.2 94 56.4
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 8.0e-16 88.2 95 56.8
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 1.0e-15 87.8 143 42.7
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 1.0e-15 87.8 98 54.1
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 1.8e-15 87.0 101 54.5
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 2.3e-15 86.7 101 47.5
SEGI_08137 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 3.0e-15 86.3 97 46.4
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 5.2e-15 85.5 96 52.1
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 8.8e-15 84.7 102 48.0
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 1.2e-14 84.3 150 40.0
SHI31592 Sapria himalayana HOM05D003481 ORTHO05D004001 1.2e-14 84.3 90 50.0
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 3.4e-14 82.8 101 45.5
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 3.4e-14 82.8 101 45.5
Nitab4.5_0001298g0050 Nicotiana tabacum HOM05D003481 ORTHO05D004001 7.5e-14 81.6 92 57.6
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 1.7e-13 80.5 112 44.6
Nitab4.5_0000378g0090 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.2e-13 80.1 92 56.5
Os04g0212200 Oryza sativa ssp. japonica HOM05D003481 ORTHO05D004001 6.3e-13 78.6 82 52.4
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 1.4e-12 77.4 97 47.4
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 1.8e-12 77.0 97 45.4
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 2.4e-12 76.6 97 47.4
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 9.2e-12 74.7 98 43.9
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 5.6e-09 65.5 41 70.7
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 9.5e-09 64.7 94 42.6


User provided reference genes

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