Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN11G0714 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.8e-191 671.8 341 100.0
FvH4_3g28130 Fragaria vesca HOM05D005815 ORTHO05D007023 2.6e-189 665.2 341 96.5
RcHm_v2.0_Chr5g0050821 Rosa chinensis HOM05D005815 ORTHO05D007023 2.6e-168 595.5 342 89.2
FAN21G0849 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.1e-154 549.3 341 85.6
FAN16G3704 Fragaria x ananassa HOM05D005815 ORTHO05D007023 4.0e-153 545.0 341 82.4
Prupe.4G258500 Prunus persica HOM05D005815 ORTHO05D007023 7.8e-149 530.8 323 78.6
Dinv36194 Davidia involucrata HOM05D005815 ORTHO05D007023 5.2e-129 464.9 320 70.6
Ciclev10015899m.g Citrus clementina HOM05D005815 ORTHO05D007023 8.4e-127 457.6 325 67.1
Atru.chr3.3156 Acer truncatum HOM05D005815 ORTHO05D007023 2.1e-125 453.0 329 66.9
CiPaw.13G152800 Carya illinoinensis HOM05D005815 ORTHO05D007023 2.7e-125 452.6 294 71.1
CANSAT54G2776 Cannabis sativa HOM05D005815 ORTHO05D007023 1.3e-124 450.3 298 71.8
Gohir.A13G217700 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.3e-124 450.3 301 69.8
CSS0034758 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 1.7e-124 449.9 293 71.7
Gorai.013G252400 Gossypium raimondii HOM05D005815 ORTHO05D007023 5.1e-124 448.4 301 69.8
Thecc.09G243800 Theobroma cacao HOM05D005815 ORTHO05D007023 5.1e-124 448.4 327 66.7
CSS0042266 Camellia sinensis var. sinensis HOM05D005815 ORTHO05D007023 8.6e-124 447.6 293 71.0
Gohir.D13G221350 Gossypium hirsutum HOM05D005815 ORTHO05D007023 1.1e-123 447.2 301 69.1
MD03G1169100 Malus domestica HOM05D005815 ORTHO05D007023 2.5e-123 446.0 248 84.7
GSVIVG01037233001 Vitis vinifera HOM05D005815 ORTHO05D007023 3.3e-123 445.7 318 66.7
Atru.chr3.2823 Acer truncatum HOM05D005815 ORTHO05D007023 7.3e-123 444.5 295 70.2
Aqoxy2G00303 Aquilegia oxysepala HOM05D005815 ORTHO05D007023 7.3e-123 444.5 288 71.5
Actinidia16359 Actinidia chinensis HOM05D005815 ORTHO05D007023 1.2e-122 443.7 296 69.3
TWI79G0828 Tripterygium wilfordii HOM05D005815 ORTHO05D007023 4.7e-122 441.8 312 66.7
TAR369G0618 Trochodendron aralioides HOM05D005815 ORTHO05D007023 1.8e-121 439.9 294 70.4
Rhsim13G0216400 Rhododendron simsii HOM05D005815 ORTHO05D007023 3.1e-121 439.1 348 63.5
Peaxi162Scf00050g01211 Petunia axillaris HOM05D005815 ORTHO05D007023 6.8e-121 438.0 285 71.2
Sed0013061 Sechium edule HOM05D005815 ORTHO05D007023 8.9e-121 437.6 308 67.2
CsaV3_1G043160 Cucumis sativus L. HOM05D005815 ORTHO05D007023 2.6e-120 436.0 310 66.1
Nitab4.5_0000718g0060 Nicotiana tabacum HOM05D005815 ORTHO05D007023 3.4e-120 435.6 283 70.3
Glyma.02G304700 Glycine max HOM05D005815 ORTHO05D007023 1.3e-119 433.7 314 65.0
FAN25G3713 Fragaria x ananassa HOM05D005815 ORTHO05D007023 2.2e-119 433.0 349 69.9
LjContig00081g0007858 Lotus japonicus HOM05D005815 ORTHO05D007023 2.2e-119 433.0 314 66.2
Potri.001G253700 Populus trichocarpa HOM05D005815 ORTHO05D007023 4.9e-119 431.8 284 70.1
Potri.009G048000 Populus trichocarpa HOM05D005815 ORTHO05D007023 6.4e-119 431.4 303 67.7
Manes.02G142200 Manihot esculenta HOM05D005815 ORTHO05D007023 1.9e-118 429.9 294 69.4
CAN.G379.23 Capsicum annuum HOM05D005815 ORTHO05D007023 9.3e-118 427.6 288 68.1
Lalb_Chr04g0247551 Lupinus albus HOM05D005815 ORTHO05D007023 2.1e-117 426.4 285 70.5
PGSC0003DMG401022694 Solanum tuberosum HOM05D005815 ORTHO05D007023 3.5e-117 425.6 285 68.4
arahy.Tifrunner.gnm1.ann1.VEUG4Z Arachis hypogaea HOM05D005815 ORTHO05D007023 4.6e-117 425.2 289 69.9
Solyc01g008930.4 Solanum lycopersicum HOM05D005815 ORTHO05D007023 4.6e-117 425.2 288 68.4
arahy.Tifrunner.gnm1.ann1.CPT0CW Arachis hypogaea HOM05D005815 ORTHO05D007023 1.0e-116 424.1 285 70.5
Lalb_Chr04g0247351 Lupinus albus HOM05D005815 ORTHO05D007023 2.3e-116 422.9 280 71.1
PSO384G1390 Papaver somniferum HOM05D005815 ORTHO05D007023 8.7e-116 421.0 287 67.9
PSO339G6039 Papaver somniferum HOM05D005815 ORTHO05D007023 2.5e-115 419.5 308 64.3
Migut.N02363 Erythranthe guttata HOM05D005815 ORTHO05D007023 2.8e-114 416.0 288 64.9
Sabra16G0154400 Salix brachista HOM05D005815 ORTHO05D007023 3.6e-114 415.6 300 64.0
PGR119G0840 Punica granatum HOM05D005815 ORTHO05D007023 4.0e-113 412.1 287 66.9
TPR.G1255 Trifolium pratense HOM05D005815 ORTHO05D007023 4.0e-113 412.1 280 69.6
Cc01_g05830 Coffea canephora HOM05D005815 ORTHO05D007023 2.0e-112 409.8 290 66.2
Medtr5g097080 Medicago truncatula HOM05D005815 ORTHO05D007023 4.4e-112 408.7 282 68.4
Eucgr.J00724 Eucalyptus grandis HOM05D005815 ORTHO05D007023 2.9e-111 406.0 291 64.6
MSTRG.17626 Avicennia marina HOM05D005815 ORTHO05D007023 1.1e-110 404.1 284 65.8
Aa31LG3G1660 Aethionema arabicum HOM05D005815 ORTHO05D007023 1.4e-110 403.7 303 62.4
Lsat_1_v5_gn_3_113801 Lactuca sativa HOM05D005815 ORTHO05D007023 1.9e-110 403.3 294 67.0
Nn2g14945 Nelumbo nucifera HOM05D005815 ORTHO05D007023 5.4e-110 401.7 324 61.1
THA.LOC104799118 Tarenaya hassleriana HOM05D005815 ORTHO05D007023 1.2e-109 400.6 304 60.2
Sc26g0004090 Simmondsia chinensis HOM05D005815 ORTHO05D007023 2.1e-109 399.8 289 64.0
EL10Ac3g06915 Beta vulgaris HOM05D005815 ORTHO05D007023 7.9e-109 397.9 289 64.0
Hma1.2p1_2660F.1_g326385 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.9e-107 393.3 259 69.9
HanXRQChr03g0090721 Helianthus annuus HOM05D005815 ORTHO05D007023 3.3e-107 392.5 289 65.7
Carub.0003s0829 Capsella rubella HOM05D005815 ORTHO05D007023 4.3e-107 392.1 303 59.7
AL3G20230 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 6.2e-106 388.3 301 59.8
AT3G09150 Arabidopsis thaliana HOM05D005815 ORTHO05D007023 3.1e-105 386.0 301 59.1
COL.COLO4_07231 Corchorus olitorius HOM05D005815 ORTHO05D007023 9.0e-105 384.4 256 70.3
DCAR_023769 Daucus carota HOM05D005815 ORTHO05D007023 2.0e-104 383.3 255 69.4
Sp3g07570 Schrenkiella parvula HOM05D005815 ORTHO05D007023 2.0e-104 383.3 298 58.7
BcaB04g18547 Brassica carinata HOM05D005815 ORTHO05D007023 7.6e-104 381.3 298 58.4
CDE04G3352 Ceratophyllum demersum HOM05D005815 ORTHO05D007023 1.3e-103 380.6 306 59.5
C03p43800 Brassica napus HOM05D005815 ORTHO05D007023 2.9e-103 379.4 298 58.7
Thhalv10011657m.g Eutrema salsugineum HOM05D005815 ORTHO05D007023 4.9e-103 378.6 301 57.5
unitig_21.g20897 Utricularia gibba HOM05D005815 ORTHO05D007023 4.9e-103 378.6 297 58.6
BcaC05g29644 Brassica carinata HOM05D005815 ORTHO05D007023 1.1e-102 377.5 301 57.8
Phvul.008G284200 Phaseolus vulgaris HOM05D005815 ORTHO05D007023 1.1e-102 377.5 249 71.1
Sopen01g004420 Solanum pennellii HOM05D005815 ORTHO05D007023 1.1e-102 377.5 252 69.0
BcaC01g04214 Brassica carinata HOM05D005815 ORTHO05D007023 1.4e-102 377.1 298 58.4
A03p36140 Brassica napus HOM05D005815 ORTHO05D007023 1.4e-102 377.1 289 59.9
CARHR083510 Cardamine hirsuta HOM05D005815 ORTHO05D007023 1.4e-102 377.1 286 60.5
Cpa.g.sc84.16 Carica papaya HOM05D005815 ORTHO05D007023 1.4e-102 377.1 253 69.2
BolC5t34532H Brassica oleracea HOM05D005815 ORTHO05D007023 5.5e-102 375.2 298 57.4
C05p58790 Brassica napus HOM05D005815 ORTHO05D007023 2.7e-101 372.9 293 58.7
BraA05t22757Z Brassica rapa HOM05D005815 ORTHO05D007023 7.9e-101 371.3 291 58.8
Ca_06446_v3 Cicer arietinum L. HOM05D005815 ORTHO05D007023 7.9e-101 371.3 253 70.0
ATR0721G178 Amborella trichopoda HOM05D005815 ORTHO05D007023 1.9e-99 366.7 259 65.6
Lj1A304T23 Lonicera japonica HOM05D005815 ORTHO05D007023 1.3e-98 364.0 221 73.8
SGA_v2.0_scaffold271G46330 Striga asiatica HOM05D005815 ORTHO05D007023 2.0e-96 356.7 304 58.6
AUR62012030 Chenopodium quinoa HOM05D005815 ORTHO05D007023 3.8e-95 352.4 299 56.5
Zm00001eb363080 Zea mays HOM05D005815 ORTHO05D007023 1.1e-94 350.9 285 58.9
Glyma.14G009100 Glycine max HOM05D005815 ORTHO05D007023 1.9e-94 350.1 314 56.7
Psat2g004880 Pisum sativum HOM05D005815 ORTHO05D007023 1.2e-93 347.4 225 73.8
BraA03t12785Z Brassica rapa HOM05D005815 ORTHO05D007023 4.6e-93 345.5 270 59.6
BolC3t16647H Brassica oleracea HOM05D001932 ORTHO05D007023 7.9e-93 344.7 275 58.2
Duzib150G0890 Durio zibethinus HOM05D005815 ORTHO05D007023 1.2e-88 330.9 265 61.9
Duzib150G1254 Durio zibethinus HOM05D005815 ORTHO05D007023 1.9e-86 323.6 344 51.2
A05p39740 Brassica napus HOM05D005815 ORTHO05D007023 2.1e-85 320.1 291 52.2
AUR62040930 Chenopodium quinoa HOM05D005815 ORTHO05D007023 6.1e-85 318.5 285 55.1
MELO3C029500.2 Cucumis melo HOM05D005815 ORTHO05D007023 6.1e-85 318.5 293 56.3
ClCG03G012900 Citrullus lanatus HOM05D005815 ORTHO05D007023 8.2e-82 308.1 565 35.0
AagrBONN_evm.TU.Sc2ySwM_344.3747 Anthoceros agrestis HOM05D005815 ORTHO05D007023 1.2e-77 294.3 279 49.8
Hma1.2p1_2660F.1_g326395 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.6e-77 293.9 190 69.5
ECA240G4129 Erigeron canadensis HOM05D000005 ORTHO05D000012 1.0e-76 291.2 196 68.9
Pp3c13_10580 Physcomitrium patens HOM05D005815 ORTHO05D007023 4.4e-75 285.8 278 47.8
AUR62015366 Chenopodium quinoa HOM05D005815 ORTHO05D007023 5.7e-75 285.4 191 66.5
SMO353G0322 Selaginella moellendorffii HOM05D005815 ORTHO05D007023 9.7e-75 284.6 321 45.5
Mapoly0015s0102 Marchantia polymorpha HOM05D005815 ORTHO05D007023 8.5e-71 271.6 281 47.0
Dinv36196 Davidia involucrata HOM05D005815 ORTHO05D007023 4.7e-69 265.8 165 73.3
VMungo0647G0340 Vigna mungo HOM05D005815 ORTHO05D007023 5.7e-67 258.8 272 51.8
QL01p017754 Quercus lobata HOM05D005815 ORTHO05D007023 9.1e-65 251.5 153 74.5
Nitab4.5_0009172g0020 Nicotiana tabacum HOM05D005815 ORTHO05D007023 1.3e-63 247.7 153 71.2
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 7.0e-57 225.3 150 70.0
Hma1.2p1_1115F.1_g258840 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 2.5e-54 216.9 178 58.4
vmacro04007 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 2.5e-54 216.9 166 63.9
Nn2g14749 Nelumbo nucifera HOM05D005815 ORTHO05D007023 6.1e-53 212.2 242 50.4
Nn2g15997 Nelumbo nucifera HOM05D005815 ORTHO05D007023 2.3e-52 210.3 242 49.6
Nitab4.5_0009172g0010 Nicotiana tabacum HOM05D005815 ORTHO05D007023 6.5e-47 192.2 132 67.4
Eucgr.G00240 Eucalyptus grandis HOM05D005815 ORTHO05D007023 1.4e-41 174.5 200 47.5
CBR_g29537 Chara braunii HOM05D005815 ORTHO05D007023 2.4e-41 173.7 215 37.7
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 5.4e-41 172.6 166 55.4
SEGI_10447 Sequoiadendron giganteum HOM05D005815 ORTHO05D007023 9.2e-41 171.8 124 62.1
Eucgr.G00241 Eucalyptus grandis HOM05D005815 ORTHO05D007023 5.0e-39 166.0 232 43.1
Hund08152 Selenicereus undatus HOM05D005815 ORTHO05D007023 6.6e-39 165.6 117 62.4
Ah.04g152490 Amaranthus hybridus HOM05D005815 ORTHO05D007023 4.3e-38 162.9 302 32.5
QL01p017749 Quercus lobata HOM05D005815 ORTHO05D007023 8.0e-37 158.7 138 60.1
HanXRQChr09g0261041 Helianthus annuus HOM05D005815 ORTHO05D007023 7.5e-35 152.1 116 65.5
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 7.8e-32 142.1 102 69.6
Os01g0949400 Oryza sativa ssp. japonica HOM05D005815 ORTHO05D007023 3.9e-31 139.8 164 47.0
arahy.Tifrunner.gnm1.ann1.24D4KD Arachis hypogaea HOM05D005815 ORTHO05D007023 1.1e-30 138.3 129 56.6
vmacro04006 Vaccinium macrocarpon HOM05D005815 ORTHO05D007023 2.3e-28 130.6 77 72.7
Haze_13921 Corylus avellana HOM05D005815 ORTHO05D007023 1.7e-23 114.4 171 40.4
AL3G20260 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 1.1e-20 105.1 76 60.5
Hma1.2p1_2660F.1_g326390 Hydrangea macrophylla HOM05D005815 ORTHO05D007023 1.7e-18 97.8 67 70.1
Actinidia24333 Actinidia chinensis HOM05D005815 ORTHO05D007023 6.4e-18 95.9 72 61.1
Glyma.14G136300 Glycine max HOM05D005815 ORTHO05D007023 4.1e-17 93.2 90 54.4
Eucgr.G00239 Eucalyptus grandis HOM05D005815 ORTHO05D007023 4.7e-13 79.7 85 49.4
MD03G1168900 Malus domestica HOM05D005815 ORTHO05D007023 2.1e-08 64.3 64 53.1
AL1G44350 Arabidopsis lyrata HOM05D005815 ORTHO05D007023 5.6e-06 56.2 52 50.0
Haze_25177 Corylus avellana HOM05D005815 ORTHO05D007023 7.3e-06 55.8 41 65.9


User provided reference genes

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