Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G4209 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.9e-199 699.1 803 100.0
FAN10G1341 Fragaria x ananassa HOM05D005846 ORTHO05D007369 7.2e-153 545.4 805 86.2
FAN01G1706 Fragaria x ananassa HOM05D005846 ORTHO05D007369 6.9e-148 528.9 396 94.2
FAN06G0321 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.3e-135 487.3 396 91.4
FAN06G3163 Fragaria x ananassa HOM05D005846 ORTHO05D007369 3.0e-127 460.3 396 87.1
FAN03G1473 Fragaria x ananassa HOM05D005846 ORTHO05D007369 2.3e-114 417.5 389 83.0
RcHm_v2.0_Chr1g0348261 Rosa chinensis HOM05D005846 ORTHO05D007369 6.1e-112 409.5 368 82.1
FvH4_7g10470 Fragaria vesca HOM05D005846 ORTHO05D007369 5.7e-110 402.9 365 87.4
MD07G1110700 Malus domestica HOM05D005846 ORTHO05D007369 8.3e-101 372.5 224 88.4
Prupe.2G134200 Prunus persica HOM05D005846 ORTHO05D007369 3.2e-100 370.5 212 90.1
QL04p035021 Quercus lobata HOM05D005846 ORTHO05D007369 8.9e-95 352.4 215 83.7
COL.COLO4_35176 Corchorus olitorius HOM05D005846 ORTHO05D007369 1.2e-94 352.1 216 85.2
arahy.Tifrunner.gnm1.ann1.DPE9LE Arachis hypogaea HOM05D005846 ORTHO05D007369 2.2e-93 347.8 213 84.5
arahy.Tifrunner.gnm1.ann1.SA9NP4 Arachis hypogaea HOM05D005846 ORTHO05D007369 2.2e-93 347.8 213 84.5
CsaV3_6G009050 Cucumis sativus L. HOM05D005846 ORTHO05D007369 3.7e-93 347.1 213 84.5
Phvul.007G143350 Phaseolus vulgaris HOM05D005846 ORTHO05D007369 3.7e-93 347.1 212 84.4
Duzib116G0440 Durio zibethinus HOM05D005846 ORTHO05D007369 6.4e-93 346.3 210 84.8
Atru.chr5.196 Acer truncatum HOM05D005846 ORTHO05D007369 1.4e-92 345.1 210 85.2
CiPaw.06G031700 Carya illinoinensis HOM05D005846 ORTHO05D007369 1.4e-92 345.1 217 83.9
Eucgr.D02512 Eucalyptus grandis HOM05D005846 ORTHO05D007369 3.2e-92 344.0 209 85.2
HanXRQChr06g0168821 Helianthus annuus HOM05D005846 ORTHO05D007369 3.2e-92 344.0 215 80.9
Haze_02742 Corylus avellana HOM05D005846 ORTHO05D007369 4.1e-92 343.6 237 80.2
Thecc.01G387400 Theobroma cacao HOM05D005846 ORTHO05D007369 4.1e-92 343.6 217 82.9
PGR004G1251 Punica granatum HOM05D005846 ORTHO05D007369 5.4e-92 343.2 212 83.0
Sed0022623 Sechium edule HOM05D005846 ORTHO05D007369 5.4e-92 343.2 228 81.6
CANSAT21G1379 Cannabis sativa HOM05D005846 ORTHO05D007369 9.2e-92 342.4 224 79.9
GSVIVG01018216001 Vitis vinifera HOM05D005846 ORTHO05D007369 9.2e-92 342.4 216 81.0
Cfa011122 Carpinus fangiana HOM05D005846 ORTHO05D007369 1.6e-91 341.7 216 83.8
Gohir.D11G145600 Gossypium hirsutum HOM05D005846 ORTHO05D007369 1.6e-91 341.7 213 85.0
Medtr7g045280 Medicago truncatula HOM05D005846 ORTHO05D007369 1.6e-91 341.7 215 82.8
TPR.G39153 Trifolium pratense HOM05D005846 ORTHO05D007369 1.6e-91 341.7 216 82.4
Ciclev10019079m.g Citrus clementina HOM05D005846 ORTHO05D007369 2.1e-91 341.3 216 81.0
Manes.05G051500 Manihot esculenta HOM05D005846 ORTHO05D007369 3.5e-91 340.5 207 85.5
SGA_v2.0_scaffold52G19202 Striga asiatica HOM05D005846 ORTHO05D007369 3.5e-91 340.5 209 82.3
Psat3g158120 Pisum sativum HOM05D005846 ORTHO05D007369 6.0e-91 339.7 217 82.5
Potri.014G057000 Populus trichocarpa HOM05D005846 ORTHO05D007369 6.0e-91 339.7 212 83.0
ECA236G0469 Erigeron canadensis HOM05D005846 ORTHO05D007369 7.8e-91 339.3 223 77.6
VMungo1383G2837 Vigna mungo HOM05D005846 ORTHO05D007369 7.8e-91 339.3 212 83.0
Lsat_1_v5_gn_7_11161 Lactuca sativa HOM05D005846 ORTHO05D007369 1.0e-90 339.0 223 79.8
Lj1g0009878 Lotus japonicus HOM05D005846 ORTHO05D007369 1.3e-90 338.6 210 83.3
Rhsim02G0216700 Rhododendron simsii HOM05D005846 ORTHO05D007369 1.7e-90 338.2 209 82.8
CSS0006984 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 2.3e-90 337.8 217 82.9
TWI14G0811 Tripterygium wilfordii HOM05D005846 ORTHO05D007369 2.3e-90 337.8 214 81.8
Dinv44098 Davidia involucrata HOM05D005846 ORTHO05D007369 3.0e-90 337.4 224 82.1
Gohir.A11G139400 Gossypium hirsutum HOM05D005846 ORTHO05D007369 3.0e-90 337.4 213 83.6
CSS0013945 Camellia sinensis var. sinensis HOM05D005846 ORTHO05D007369 3.9e-90 337.0 217 82.9
Sp4g27070 Schrenkiella parvula HOM05D005846 ORTHO05D007369 3.9e-90 337.0 220 80.5
vmacro13469 Vaccinium macrocarpon HOM05D005846 ORTHO05D007369 3.9e-90 337.0 216 80.1
Thhalv10001339m.g Eutrema salsugineum HOM05D005846 ORTHO05D007369 6.6e-90 336.3 225 78.7
AL4G44100 Arabidopsis lyrata HOM05D005846 ORTHO05D007369 1.9e-89 334.7 210 81.4
Gorai.007G156100 Gossypium raimondii HOM05D005846 ORTHO05D007369 1.9e-89 334.7 220 82.3
Nitab4.5_0003110g0060 Nicotiana tabacum HOM05D005846 ORTHO05D007369 1.9e-89 334.7 208 80.8
Migut.B01566 Erythranthe guttata HOM05D005846 ORTHO05D007369 2.5e-89 334.3 211 81.5
MSTRG.28219 Avicennia marina HOM05D005846 ORTHO05D007369 3.3e-89 334.0 211 81.5
AT2G45000 Arabidopsis thaliana HOM05D005846 ORTHO05D007369 7.3e-89 332.8 210 81.4
Carub.0004s2760 Capsella rubella HOM05D005846 ORTHO05D007369 9.5e-89 332.4 210 81.0
CARHR140260 Cardamine hirsuta HOM05D005846 ORTHO05D007369 1.2e-88 332.0 210 81.0
DCAR_031886 Daucus carota HOM05D005846 ORTHO05D007369 1.2e-88 332.0 209 81.3
Lj9C561G11 Lonicera japonica HOM05D005846 ORTHO05D007369 1.2e-88 332.0 223 77.6
Glyma.01G074700 Glycine max HOM05D005846 ORTHO05D007369 2.1e-88 331.3 210 82.4
THA.LOC104802481 Tarenaya hassleriana HOM05D005846 ORTHO05D007369 2.1e-88 331.3 210 83.3
Actinidia22778 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.8e-88 330.9 205 83.4
Actinidia22833 Actinidia chinensis HOM05D005846 ORTHO05D007369 2.8e-88 330.9 205 83.4
Hund27391 Selenicereus undatus HOM05D005846 ORTHO05D007369 2.8e-88 330.9 210 81.4
CAN.G899.26 Capsicum annuum HOM05D005846 ORTHO05D007369 8.1e-88 329.3 211 78.7
MBI05_g14240_MAGBIO Magnolia biondii HOM05D005846 ORTHO05D007369 8.1e-88 329.3 215 79.5
Solyc01g090670.3 Solanum lycopersicum HOM05D005846 ORTHO05D007369 1.4e-87 328.6 209 78.9
Ca_26287_v3 Cicer arietinum L. HOM05D005846 ORTHO05D007369 1.8e-87 328.2 210 82.4
Glyma.11G162365 Glycine max HOM05D005846 ORTHO05D007369 1.8e-87 328.2 209 82.3
Sabra14G0041600 Salix brachista HOM05D002053 ORTHO05D002135 1.8e-87 328.2 203 83.7
Aqoxy5G03824 Aquilegia oxysepala HOM05D005846 ORTHO05D007369 2.4e-87 327.8 216 77.8
A05p05100 Brassica napus HOM05D005846 ORTHO05D007369 2.4e-87 327.8 210 81.0
Cc02_g24740 Coffea canephora HOM05D005846 ORTHO05D007369 4.0e-87 327.0 209 78.9
Sopen01g036400 Solanum pennellii HOM05D005846 ORTHO05D007369 6.8e-87 326.2 209 78.5
Lalb_Chr19g0126671 Lupinus albus HOM05D005846 ORTHO05D007369 1.2e-86 325.5 210 81.0
BcaC02g12270 Brassica carinata HOM05D005846 ORTHO05D007369 1.5e-86 325.1 210 80.5
BraA05t19484Z Brassica rapa HOM05D005846 ORTHO05D007369 3.4e-86 323.9 211 80.1
ClCG06G002930 Citrullus lanatus HOM05D005846 ORTHO05D007369 4.4e-86 323.6 196 84.7
MELO3C022237.2 Cucumis melo HOM05D005846 ORTHO05D007369 5.8e-86 323.2 251 71.3
C04p05950 Brassica napus HOM05D005846 ORTHO05D007369 1.3e-85 322.0 210 80.0
BolC4t22226H Brassica oleracea HOM05D005846 ORTHO05D007369 1.3e-85 322.0 210 80.0
Ah.05g173450 Amaranthus hybridus HOM05D005846 ORTHO05D007369 1.7e-85 321.6 211 78.2
Aa31LG1G26590 Aethionema arabicum HOM05D005846 ORTHO05D007369 1.2e-83 315.5 225 74.2
PSO675G5996 Papaver somniferum HOM05D005846 ORTHO05D007369 7.8e-83 312.8 212 76.4
PSO541G5798 Papaver somniferum HOM05D005846 ORTHO05D007369 1.3e-82 312.0 212 76.4
Peaxi162Scf00377g00722 Petunia axillaris HOM05D005846 ORTHO05D007369 2.3e-82 311.2 195 79.5
EL10Ac1g00809 Beta vulgaris HOM05D005846 ORTHO05D007369 3.0e-82 310.8 202 79.7
unitig_26.g8879 Utricularia gibba HOM05D005846 ORTHO05D007369 4.3e-81 307.0 210 75.7
CDE02G2440 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 7.3e-81 306.2 285 58.9
CDE04G1707 Ceratophyllum demersum HOM05D005846 ORTHO05D007369 6.9e-79 299.7 226 68.1
ATR0559G037 Amborella trichopoda HOM05D005846 ORTHO05D007369 1.5e-78 298.5 216 73.1
TAR375G0515 Trochodendron aralioides HOM05D005846 ORTHO05D007369 8.4e-77 292.7 186 83.9
Nn6g33892 Nelumbo nucifera HOM05D005846 ORTHO05D007369 5.4e-76 290.0 207 76.3
Oeu061505.1 Olea europaea HOM05D005846 ORTHO05D007369 3.3e-73 280.8 185 78.4
HanXRQChr04g0123471 Helianthus annuus HOM05D005846 ORTHO05D007369 9.6e-73 279.3 194 73.7
Zm00001eb367060 Zea mays HOM05D005846 ORTHO05D007369 8.1e-72 276.2 216 66.2
arahy.Tifrunner.gnm1.ann1.2XVX2B Arachis hypogaea HOM05D005846 ORTHO05D007369 9.9e-70 269.2 225 67.1
AagrBONN_evm.TU.Sc2ySwM_117.1077 Anthoceros agrestis HOM05D005846 ORTHO05D007369 6.4e-69 266.5 211 66.4
Pp3c15_14630 Physcomitrium patens HOM05D005846 ORTHO05D007369 6.0e-67 260.0 211 63.0
AUR62004139 Chenopodium quinoa HOM05D005846 ORTHO05D007369 1.0e-66 259.2 201 69.7
HPP92_027757 Vanilla planifolia HOM05D005846 ORTHO05D007369 8.7e-66 256.1 193 67.4
Mapoly0005s0221 Marchantia polymorpha HOM05D005846 ORTHO05D007369 2.8e-64 251.1 195 65.1
AUR62013700 Chenopodium quinoa HOM05D005846 ORTHO05D007369 4.5e-62 243.8 187 70.6
PGR004G1857 Punica granatum HOM05D005846 ORTHO05D007369 2.2e-61 241.5 202 68.3
Sc02g0002920 Simmondsia chinensis HOM05D005846 ORTHO05D007369 7.4e-57 226.5 149 79.2
Nitab4.5_0001823g0090 Nicotiana tabacum HOM05D005846 ORTHO05D007369 2.1e-56 224.9 171 69.0
CBR_g21126 Chara braunii HOM05D005846 ORTHO05D007369 6.0e-51 206.8 194 59.8
HPP92_002750 Vanilla planifolia HOM05D005846 ORTHO05D007369 2.8e-40 171.4 156 55.8
Atru.chr5.198 Acer truncatum HOM05D002424 ORTHO05D002640 6.1e-35 153.7 94 84.0
Os01g0856600 Oryza sativa ssp. japonica HOM05D005846 ORTHO05D007369 1.4e-31 142.5 115 60.9
arahy.Tifrunner.gnm1.ann1.V1AVP1 Arachis hypogaea HOM05D005846 ORTHO05D007369 9.4e-28 129.8 103 70.9
Cre16.g677700 Chlamydomonas reinhardtii HOM05D005846 ORTHO05D007369 1.0e-26 126.3 203 40.4
QL04p035108 Quercus lobata HOM05D005846 ORTHO05D007369 8.8e-26 123.2 79 77.2
PRCOL_00002612 Prasinoderma coloniale HOM05D005846 ORTHO05D007369 5.3e-23 114.0 198 36.4
QL04p035237 Quercus lobata HOM05D005846 ORTHO05D007369 5.3e-23 114.0 76 75.0
Cpa.g.sc22.5 Carica papaya HOM05D005846 ORTHO05D007369 7.0e-23 113.6 82 74.4
QL05p084337 Quercus lobata HOM05D005846 ORTHO05D007369 5.0e-21 107.5 64 82.8
Cpa.g.sc22.4 Carica papaya HOM05D005846 ORTHO05D007369 6.5e-21 107.1 63 81.0
Atru.chr5.201 Acer truncatum HOM05D005846 ORTHO05D007369 9.4e-20 103.2 63 81.0
HanXRQChr12g0364311 Helianthus annuus HOM05D005846 ORTHO05D007369 3.3e-17 94.7 56 82.1
HanXRQChr16g0530801 Helianthus annuus HOM05D005846 ORTHO05D007369 1.3e-16 92.8 180 36.1
Lsat_1_v5_gn_4_126501 Lactuca sativa HOM05D005846 ORTHO05D007369 3.7e-16 91.3 63 73.0
HPP92_006013 Vanilla planifolia HOM05D005846 ORTHO05D007369 4.8e-16 90.9 107 46.7
HPP92_002751 Vanilla planifolia HOM05D005846 ORTHO05D007369 6.3e-16 90.5 59 72.9
C09p68450 Brassica napus HOM05D005846 ORTHO05D007369 2.4e-15 88.6 104 50.0
HanXRQChr01g0009681 Helianthus annuus HOM05D005846 ORTHO05D007369 9.1e-15 86.7 168 35.1
A05p20700 Brassica napus HOM05D005846 ORTHO05D007369 8.5e-13 80.1 51 74.5
MCO01G259 Micromonas commoda HOM05D005846 ORTHO05D007369 1.1e-12 79.7 142 31.7
MCO01G299 Micromonas commoda HOM05D005846 ORTHO05D007369 1.1e-12 79.7 142 31.7
HanXRQChr02g0053971 Helianthus annuus HOM05D005846 ORTHO05D000176 5.5e-12 77.4 159 35.2
SalBow5G1215 Salvia bowleyana HOM05D005846 ORTHO05D007369 1.5e-09 69.3 59 66.1
BolC9t59592H Brassica oleracea HOM05D022734 ORTHO05D024517 2.4e-07 62.0 35 80.0
Cfa023102 Carpinus fangiana HOM05D000298 ORTHO05D125655 3.1e-07 61.6 157 28.0
HanXRQChr12g0366671 Helianthus annuus HOM05D005846 ORTHO05D007369 1.2e-06 59.7 36 75.0


User provided reference genes

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