Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 8.2e-238 826.6 410 100.0
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.5e-220 767.7 416 93.0
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.4e-189 666.4 402 85.1
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 2.4e-173 612.5 316 95.9
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 1.8e-168 596.3 443 71.1
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 2.5e-162 575.9 431 69.6
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 4.5e-151 538.5 413 66.8
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 6.3e-145 518.1 391 66.0
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 1.1e-144 517.3 391 66.0
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 1.8e-144 516.5 390 65.6
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 4.2e-141 505.4 423 61.9
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 7.2e-141 504.6 413 62.0
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 2.7e-140 502.7 413 61.7
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 1.8e-139 500.0 413 63.4
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 8.8e-139 497.7 410 60.5
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 4.3e-138 495.4 423 62.9
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 6.3e-137 491.5 383 64.8
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 2.2e-134 483.0 417 61.4
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 2.2e-134 483.0 416 59.9
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 3.8e-134 482.3 406 63.5
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 5.0e-134 481.9 410 61.5
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 8.5e-134 481.1 406 60.8
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.9e-133 479.9 396 62.4
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 5.5e-133 478.4 427 59.0
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 7.2e-133 478.0 404 61.6
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 2.7e-132 476.1 415 59.5
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 7.9e-132 474.6 404 60.6
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.0e-131 474.2 285 87.7
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 1.4e-131 473.8 397 63.7
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 1.4e-131 473.8 442 57.0
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 3.9e-131 472.2 412 57.8
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 8.8e-131 471.1 431 57.8
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 1.5e-130 470.3 407 58.5
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 4.4e-130 468.8 399 61.9
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 9.7e-130 467.6 340 70.0
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 1.3e-129 467.2 409 59.7
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 2.8e-129 466.1 394 62.9
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 2.8e-129 466.1 415 57.3
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 8.2e-129 464.5 413 61.0
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 1.8e-128 463.4 414 58.9
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 9.1e-128 461.1 412 58.3
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 1.2e-127 460.7 396 61.9
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 2.0e-127 459.9 377 62.6
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 3.5e-127 459.1 421 56.8
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 3.5e-127 459.1 421 57.0
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 5.9e-127 458.4 411 59.9
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 7.7e-127 458.0 406 60.6
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 1.0e-126 457.6 412 57.8
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 2.2e-126 456.4 397 62.2
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 2.2e-126 456.4 409 58.7
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 2.9e-126 456.1 415 55.7
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 5.0e-126 455.3 387 60.7
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 8.5e-126 454.5 390 60.8
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 1.1e-125 454.1 412 56.8
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 3.2e-125 452.6 404 58.2
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 4.7e-124 448.7 415 59.3
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 8.0e-124 448.0 412 57.8
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 6.7e-123 444.9 411 56.9
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.1e-122 444.1 412 56.8
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 2.0e-122 443.4 415 56.6
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 2.2e-121 439.9 411 55.7
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 2.8e-121 439.5 415 56.4
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 3.7e-121 439.1 361 63.7
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 4.8e-121 438.7 441 54.2
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 7.0e-120 434.9 411 54.5
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 1.6e-119 433.7 404 56.4
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 7.7e-119 431.4 410 55.6
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.0e-118 431.0 439 52.6
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 1.3e-118 430.6 426 55.2
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 1.7e-118 430.3 351 63.0
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 1.5e-117 427.2 406 58.1
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 2.5e-117 426.4 411 55.0
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 5.5e-117 425.2 409 55.0
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 9.4e-117 424.5 407 55.0
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 2.7e-116 422.9 416 54.3
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 6.8e-115 418.3 346 61.6
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 1.2e-114 417.5 384 57.8
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 2.6e-114 416.4 355 62.0
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 7.5e-114 414.8 359 60.2
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 9.8e-114 414.5 333 65.2
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 8.3e-113 411.4 417 54.4
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 1.4e-112 410.6 428 53.3
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 1.6e-111 407.1 431 52.2
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.7e-111 406.4 410 54.4
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 5.5e-109 398.7 354 61.3
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 9.4e-109 397.9 384 54.9
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 3.6e-108 396.0 361 61.2
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 3.4e-106 389.4 359 56.5
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 3.1e-104 382.9 341 58.7
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 1.2e-103 380.9 386 54.1
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 6.8e-99 365.2 399 50.9
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 3.5e-95 352.8 298 63.4
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 8.6e-94 348.2 374 51.3
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 3.3e-93 346.3 374 49.5
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 1.6e-92 344.0 412 51.0
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 8.9e-91 338.2 392 47.7
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 2.6e-90 336.7 370 53.2
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 6.2e-84 315.5 398 45.2
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 2.4e-80 303.5 258 62.4
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 1.0e-78 298.1 517 37.7
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 3.9e-78 296.2 257 60.3
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 1.5e-77 294.3 326 52.1
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 1.2e-76 291.2 221 65.6
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 6.8e-75 285.4 309 54.7
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 1.0e-70 271.6 515 35.9
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 7.6e-66 255.4 302 48.0
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 2.2e-65 253.8 425 39.5
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 1.9e-64 250.8 224 59.4
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 8.7e-62 241.9 220 55.5
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 2.1e-60 237.3 258 52.3
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 2.4e-59 233.8 415 38.1
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 9.0e-59 231.9 253 47.4
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.6e-58 230.3 160 78.1
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 9.9e-58 228.4 180 61.7
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 1.7e-57 227.6 335 42.1
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.4e-56 223.8 189 58.7
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 2.4e-51 207.2 179 64.2
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 4.9e-49 199.5 186 60.8
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 1.6e-47 194.5 153 63.4
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 5.6e-45 186.0 185 53.0
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 5.8e-42 176.0 194 46.4
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 1.0e-41 175.3 301 38.2
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 1.0e-33 148.7 454 29.7
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 6.5e-33 146.0 122 58.2
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 8.4e-33 145.6 93 78.5
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 6.1e-31 139.4 393 27.0
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 8.7e-30 135.6 818 22.6
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.9e-29 134.4 106 56.6
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 2.5e-29 134.0 81 80.2
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 3.3e-29 133.7 86 75.6
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 7.4e-29 132.5 124 50.8
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 3.4e-26 123.6 88 69.3
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 1.7e-25 121.3 430 28.8
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 1.0e-22 112.1 133 48.1
MD07G1140100 Malus domestica HOM05D005745 ORTHO05D006857 5.9e-18 96.3 65 70.8
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 3.2e-16 90.5 297 30.0
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 3.6e-15 87.0 90 55.6
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 1.4e-14 85.1 233 28.3
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 1.0e-09 68.9 262 27.9
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 4.0e-06 57.0 33 78.8


User provided reference genes

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