Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G3643 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.9e-97 359.4 209 100.0
FvH4_5g17630 Fragaria vesca HOM05D003481 ORTHO05D004001 1.2e-91 340.1 210 96.7
FAN27G0233 Fragaria x ananassa HOM05D003481 ORTHO05D004001 7.7e-91 337.4 210 92.4
FvH4_4g15480 Fragaria vesca HOM05D003481 ORTHO05D004001 8.0e-88 327.4 210 93.8
FAN18G3112 Fragaria x ananassa HOM05D003481 ORTHO05D004001 6.8e-87 324.3 214 91.1
FAN11G1212 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.8e-84 316.2 210 92.9
FvH4_4g15181 Fragaria vesca HOM05D003481 ORTHO05D004001 8.6e-74 280.8 159 89.9
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 5.4e-52 208.4 153 87.6
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 5.4e-52 208.4 153 87.6
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 3.3e-49 199.1 154 85.7
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 9.5e-49 197.6 152 85.5
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 4.7e-48 195.3 152 85.5
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 2.4e-47 193.0 150 68.7
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 3.6e-40 169.1 143 61.5
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 6.2e-40 168.3 143 62.2
Manes.03G070216 Manihot esculenta HOM05D003481 ORTHO05D004001 2.4e-31 139.8 99 66.7
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 9.0e-31 137.9 101 68.3
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 9.9e-30 134.4 94 71.3
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 9.9e-30 134.4 94 71.3
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 1.3e-29 134.0 101 66.3
Lj1A1155T51 Lonicera japonica HOM05D003481 ORTHO05D004001 3.8e-29 132.5 149 50.3
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 4.9e-29 132.1 99 66.7
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 6.4e-29 131.7 144 52.8
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 1.4e-28 130.6 101 63.4
Cpa.g.sc192.16 Carica papaya HOM05D003481 ORTHO05D004001 5.4e-28 128.6 93 68.8
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 7.1e-28 128.3 97 63.9
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 1.2e-27 127.5 93 67.7
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 2.7e-27 126.3 127 52.0
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 2.7e-27 126.3 99 60.6
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 3.5e-27 125.9 159 53.5
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 3.5e-27 125.9 151 49.7
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 7.9e-27 124.8 147 49.0
CSS0036853 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 7.9e-27 124.8 97 61.9
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 7.9e-27 124.8 97 63.9
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 7.9e-27 124.8 97 64.9
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 7.9e-27 124.8 97 64.9
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 7.9e-27 124.8 97 64.9
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 1.0e-26 124.4 136 48.5
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 1.0e-26 124.4 118 53.4
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 1.3e-26 124.0 139 54.7
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 1.8e-26 123.6 139 50.4
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 1.8e-26 123.6 137 54.0
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 2.3e-26 123.2 137 54.0
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 3.0e-26 122.9 124 51.6
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 3.9e-26 122.5 100 66.0
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 3.9e-26 122.5 100 66.0
Haze_05983 Corylus avellana HOM05D003481 ORTHO05D004001 5.1e-26 122.1 160 54.4
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 6.7e-26 121.7 143 49.7
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 6.7e-26 121.7 97 60.8
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 8.7e-26 121.3 143 49.0
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 8.7e-26 121.3 169 46.2
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 1.5e-25 120.6 143 49.0
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 5.6e-25 118.6 154 46.8
arahy.Tifrunner.gnm1.ann1.R9RUHP Arachis hypogaea HOM05D003481 ORTHO05D004001 5.6e-25 118.6 154 46.8
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 2.1e-24 116.7 151 45.7
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 3.7e-24 115.9 99 63.6
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 6.2e-24 115.2 145 54.5
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 6.2e-24 115.2 111 53.2
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 8.1e-24 114.8 134 47.0
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 1.1e-23 114.4 140 46.4
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 1.4e-23 114.0 133 46.6
Actinidia29310 Actinidia chinensis HOM05D003481 ORTHO05D004001 4.0e-23 112.5 153 47.7
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 4.0e-23 112.5 117 53.8
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 1.2e-22 110.9 152 48.0
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 1.5e-22 110.5 99 61.6
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 1.5e-22 110.5 109 55.0
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 1.5e-22 110.5 167 44.3
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 2.0e-22 110.2 138 44.2
TAR624G0988 Trochodendron aralioides HOM05D003481 ORTHO05D004001 2.0e-22 110.2 105 53.3
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 3.4e-22 109.4 156 45.5
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 7.6e-22 108.2 97 59.8
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 7.6e-22 108.2 139 44.6
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 7.6e-22 108.2 142 49.3
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 7.6e-22 108.2 137 48.2
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 1.0e-21 107.8 104 52.9
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 1.3e-21 107.5 101 56.4
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 1.7e-21 107.1 97 58.8
Solyc02g030100.4 Solanum lycopersicum HOM05D003481 ORTHO05D004001 1.7e-21 107.1 151 45.7
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 2.2e-21 106.7 97 58.8
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 2.2e-21 106.7 97 58.8
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 2.2e-21 106.7 130 48.5
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 2.9e-21 106.3 95 57.9
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 3.8e-21 105.9 112 54.5
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 4.9e-21 105.5 149 47.0
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 6.5e-21 105.1 119 52.9
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 6.5e-21 105.1 141 49.6
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 1.1e-20 104.4 146 43.2
ATR1132G122 Amborella trichopoda HOM05D003481 ORTHO05D004001 1.9e-20 103.6 154 42.9
BcaNung07304 Brassica carinata HOM05D003481 ORTHO05D004001 1.9e-20 103.6 94 58.5
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 1.9e-20 103.6 96 59.4
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 1.9e-20 103.6 96 59.4
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 1.9e-20 103.6 149 45.0
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 2.5e-20 103.2 151 43.0
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 2.5e-20 103.2 151 45.0
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 2.5e-20 103.2 96 60.4
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 3.2e-20 102.8 148 48.0
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 4.2e-20 102.4 96 58.3
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 4.2e-20 102.4 157 42.0
Peaxi162Scf00267g00085 Petunia axillaris HOM05D003481 ORTHO05D004001 4.2e-20 102.4 96 58.3
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 5.5e-20 102.1 151 41.7
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 7.1e-20 101.7 97 56.7
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 9.3e-20 101.3 151 45.7
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 9.3e-20 101.3 151 46.4
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 9.3e-20 101.3 151 46.4
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 9.3e-20 101.3 102 55.9
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 9.3e-20 101.3 102 55.9
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 1.2e-19 100.9 98 59.2
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 1.6e-19 100.5 98 57.1
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 2.1e-19 100.1 96 58.3
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.7e-19 99.8 142 47.2
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 3.5e-19 99.4 150 44.7
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 4.6e-19 99.0 96 57.3
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 4.6e-19 99.0 96 57.3
SHI31592 Sapria himalayana HOM05D003481 ORTHO05D004001 7.9e-19 98.2 90 53.3
Nitab4.5_0001298g0050 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.0e-18 97.8 92 60.9
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 1.3e-18 97.4 102 54.9
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 2.3e-18 96.7 101 49.5
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 3.0e-18 96.3 102 51.0
Oeu051246.1 Olea europaea HOM05D003481 ORTHO05D004001 3.0e-18 96.3 94 57.4
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 3.9e-18 95.9 157 42.0
SEGI_08137 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 3.9e-18 95.9 97 48.5
Nitab4.5_0000378g0090 Nicotiana tabacum HOM05D003481 ORTHO05D004001 5.1e-18 95.5 92 59.8
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 3.3e-17 92.8 98 53.1
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 7.4e-17 91.7 101 46.5
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 7.4e-17 91.7 101 46.5
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 4.0e-15 85.9 97 45.4
Os04g0212200 Oryza sativa ssp. japonica HOM05D003481 ORTHO05D004001 5.3e-15 85.5 82 52.4
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 5.3e-15 85.5 97 46.4
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 1.2e-14 84.3 97 48.5
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 1.2e-14 84.3 97 47.4
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 1.9e-12 77.0 90 44.4
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 5.7e-09 65.5 41 70.7


User provided reference genes

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