Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0623 Fragaria x ananassa HOM05D002543 ORTHO05D021537 5.6e-62 240.7 119 100.0
FAN03G0917 Fragaria x ananassa HOM05D004650 ORTHO05D005715 3.5e-56 221.5 111 97.3
FAN06G0733 Fragaria x ananassa HOM05D004650 ORTHO05D005715 4.6e-24 114.8 105 62.9
FvH4_7g06170 Fragaria vesca HOM05D033823 ORTHO05D045775 4.5e-19 98.2 104 58.7
FAN01G1511 Fragaria x ananassa HOM05D002543 ORTHO05D021537 6.1e-16 87.8 46 91.3
FAN01G2518 Fragaria x ananassa HOM05D033823 ORTHO05D045775 6.1e-16 87.8 137 47.4
FAN10G1760 Fragaria x ananassa HOM05D002543 ORTHO05D021537 2.3e-15 85.9 44 93.2
FAN10G1169 Fragaria x ananassa HOM05D004650 ORTHO05D005715 6.7e-15 84.3 105 50.5
FAN02G0698 Fragaria x ananassa HOM05D002543 ORTHO05D002990 7.4e-14 80.9 46 84.8
FAN05G0666 Fragaria x ananassa HOM05D002543 ORTHO05D002990 7.4e-14 80.9 46 84.8
RcHm_v2.0_Chr3g0457611 Rosa chinensis HOM05D002543 ORTHO05D002990 7.4e-14 80.9 46 84.8
MD04G1191000 Malus domestica HOM05D002543 ORTHO05D002990 1.7e-13 79.7 46 82.6
Prupe.6G309500 Prunus persica HOM05D002543 ORTHO05D002990 2.2e-13 79.3 46 82.6
FvH4_6g07910 Fragaria vesca HOM05D002543 ORTHO05D002990 3.7e-13 78.6 46 82.6
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 3.7e-13 78.6 46 82.6
FAN14G2557 Fragaria x ananassa HOM05D002543 ORTHO05D002990 3.7e-13 78.6 46 82.6
Actinidia16883 Actinidia chinensis HOM05D002543 ORTHO05D002990 4.8e-13 78.2 46 82.6
Cpa.g.sc48.194 Carica papaya HOM05D002543 ORTHO05D002990 4.8e-13 78.2 46 82.6
TAR362G1343 Trochodendron aralioides HOM05D002543 ORTHO05D002990 4.8e-13 78.2 46 82.6
MD12G1203600 Malus domestica HOM05D002543 ORTHO05D002990 6.3e-13 77.8 46 80.4
CiPaw.07G031800 Carya illinoinensis HOM05D002543 ORTHO05D002990 1.1e-12 77.0 46 80.4
Nn3g21830 Nelumbo nucifera HOM05D002543 ORTHO05D002990 1.1e-12 77.0 46 80.4
Os12g0420200 Oryza sativa ssp. japonica HOM05D002543 ORTHO05D002990 1.8e-12 76.3 45 82.2
vmacro01588 Vaccinium macrocarpon HOM05D002543 ORTHO05D002990 1.8e-12 76.3 45 82.2
Nitab4.5_0002084g0070 Nicotiana tabacum HOM05D002543 ORTHO05D002990 2.4e-12 75.9 45 82.2
Nitab4.5_0006914g0020 Nicotiana tabacum HOM05D002543 ORTHO05D002990 2.4e-12 75.9 45 82.2
Oeu053729.3 Olea europaea HOM05D002543 ORTHO05D002990 2.4e-12 75.9 45 82.2
Peaxi162Scf00413g00612 Petunia axillaris HOM05D002543 ORTHO05D002990 2.4e-12 75.9 45 82.2
QL03p017109 Quercus lobata HOM05D002543 ORTHO05D002990 2.4e-12 75.9 46 80.4
QL03p017392 Quercus lobata HOM05D002543 ORTHO05D002990 2.4e-12 75.9 46 80.4
Rhsim11G0098700 Rhododendron simsii HOM05D002543 ORTHO05D002990 2.4e-12 75.9 46 80.4
Sc09g0002550 Simmondsia chinensis HOM05D002543 ORTHO05D002990 2.4e-12 75.9 46 78.3
Actinidia35506 Actinidia chinensis HOM05D002543 ORTHO05D002990 3.1e-12 75.5 42 88.1
SGA_v2.0_scaffold5G02903 Striga asiatica HOM05D002543 ORTHO05D002990 3.1e-12 75.5 45 82.2
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 3.1e-12 75.5 45 82.2
MSTRG.27925 Avicennia marina HOM05D002543 ORTHO05D002990 4.1e-12 75.1 45 82.2
MSTRG.5153 Avicennia marina HOM05D002543 ORTHO05D002990 4.1e-12 75.1 45 80.0
MBI19_g32691_MAGBIO Magnolia biondii HOM05D002543 ORTHO05D002990 4.1e-12 75.1 46 78.3
Manes.09G179000 Manihot esculenta HOM05D002543 ORTHO05D002990 4.1e-12 75.1 46 80.4
THA.LOC104820540 Tarenaya hassleriana HOM05D002543 ORTHO05D002990 4.1e-12 75.1 46 80.4
ATR0693G343 Amborella trichopoda HOM05D002543 ORTHO05D002990 5.3e-12 74.7 46 78.3
CDE08G1278 Ceratophyllum demersum HOM05D002543 ORTHO05D002990 5.3e-12 74.7 45 80.0
Haze_04051 Corylus avellana HOM05D002543 ORTHO05D002990 5.3e-12 74.7 45 82.2
Hma1.2p1_0008F-1.1_g005360 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 5.3e-12 74.7 47 78.7
Hma1.2p1_1808F.1_g303465 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 5.3e-12 74.7 47 78.7
TWI56G1324 Tripterygium wilfordii HOM05D002543 ORTHO05D002990 5.3e-12 74.7 45 82.2
CSS0021124 Camellia sinensis var. sinensis HOM05D002543 ORTHO05D002990 6.9e-12 74.3 44 81.8
Cc02_g35140 Coffea canephora HOM05D002543 ORTHO05D002990 6.9e-12 74.3 45 80.0
Aqoxy7G03338 Aquilegia oxysepala HOM05D002543 ORTHO05D002990 9.1e-12 73.9 45 80.0
Dinv30917 Davidia involucrata HOM05D002543 ORTHO05D002990 9.1e-12 73.9 47 76.6
PSO210G0417 Papaver somniferum HOM05D002543 ORTHO05D002990 9.1e-12 73.9 46 78.3
PSO761G0053 Papaver somniferum HOM05D002543 ORTHO05D002990 9.1e-12 73.9 46 78.3
CDE02G1117 Ceratophyllum demersum HOM05D002543 ORTHO05D002990 1.2e-11 73.6 45 77.8
ECA248G3036 Erigeron canadensis HOM05D002543 ORTHO05D002990 1.5e-11 73.2 45 80.0
Lsat_1_v5_gn_5_157440 Lactuca sativa HOM05D002543 ORTHO05D002990 1.5e-11 73.2 45 80.0
Lalb_Chr04g0260351 Lupinus albus HOM05D002543 ORTHO05D002990 1.5e-11 73.2 45 80.0
Pp3c22_14530 Physcomitrium patens HOM05D002543 ORTHO05D002990 1.5e-11 73.2 45 75.6
CANSAT54G0111 Cannabis sativa HOM05D002543 ORTHO05D002990 2.0e-11 72.8 45 80.0
Cfa006711 Carpinus fangiana HOM05D002543 ORTHO05D002990 2.6e-11 72.4 46 76.1
ClCG01G010830 Citrullus lanatus HOM05D002543 ORTHO05D002990 2.6e-11 72.4 46 76.1
MELO3C008920.2 Cucumis melo HOM05D002543 ORTHO05D002990 2.6e-11 72.4 46 76.1
CsaV3_4G030580 Cucumis sativus L. HOM05D002543 ORTHO05D002990 2.6e-11 72.4 46 76.1
Sed0006506 Sechium edule HOM05D002543 ORTHO05D002990 2.6e-11 72.4 46 76.1
BcaB07g34128 Brassica carinata HOM05D002543 ORTHO05D002990 3.4e-11 72.0 46 76.1
BcaC05g24788 Brassica carinata HOM05D002543 ORTHO05D002990 3.4e-11 72.0 46 76.1
A06p06060 Brassica napus HOM05D002543 ORTHO05D002990 3.4e-11 72.0 46 76.1
C05p07330 Brassica napus HOM05D002543 ORTHO05D002990 3.4e-11 72.0 46 76.1
BolC5t29491H Brassica oleracea HOM05D002543 ORTHO05D002990 3.4e-11 72.0 46 76.1
BraA06t23817Z Brassica rapa HOM05D002543 ORTHO05D002990 3.4e-11 72.0 46 76.1
unitig_749.g13404 Utricularia gibba HOM05D002543 ORTHO05D002990 3.4e-11 72.0 45 75.6
CARHR009310 Cardamine hirsuta HOM05D002543 ORTHO05D002990 4.5e-11 71.6 46 76.1
Dinv30918 Davidia involucrata HOM05D002543 ORTHO05D002990 4.5e-11 71.6 44 79.5
Thhalv10007937m.g Eutrema salsugineum HOM05D002543 ORTHO05D002990 4.5e-11 71.6 46 76.1
Gohir.D11G284900 Gossypium hirsutum HOM05D002543 ORTHO05D002990 4.5e-11 71.6 45 77.8
Gorai.007G308300 Gossypium raimondii HOM05D002543 ORTHO05D002990 4.5e-11 71.6 45 77.8
Phvul.001G223800 Phaseolus vulgaris HOM05D002543 ORTHO05D002990 4.5e-11 71.6 45 77.8
Sp1g07950 Schrenkiella parvula HOM05D002543 ORTHO05D002990 4.5e-11 71.6 46 76.1
VMungo1383G0020 Vigna mungo HOM05D002543 ORTHO05D002990 4.5e-11 71.6 45 77.8
Aa31LG1G5780 Aethionema arabicum HOM05D002543 ORTHO05D002990 5.9e-11 71.2 46 73.9
AL1G19830 Arabidopsis lyrata HOM05D002543 ORTHO05D002990 5.9e-11 71.2 46 76.1
AT1G09340 Arabidopsis thaliana HOM05D002543 ORTHO05D002990 5.9e-11 71.2 46 76.1
BcaC07g41890 Brassica carinata HOM05D002543 ORTHO05D002990 5.9e-11 71.2 46 73.9
Carub.0001s0868 Capsella rubella HOM05D002543 ORTHO05D002990 5.9e-11 71.2 46 76.1
Manes.16G048915 Manihot esculenta HOM05D002543 ORTHO05D002990 5.9e-11 71.2 46 76.1
Potri.005G010266 Populus trichocarpa HOM05D002543 ORTHO05D002990 5.9e-11 71.2 46 76.1
Potri.013G006100 Populus trichocarpa HOM05D002543 ORTHO05D002990 5.9e-11 71.2 46 76.1
SMO169G0181 Selaginella moellendorffii HOM05D002543 ORTHO05D002990 5.9e-11 71.2 45 73.3
THA.LOC104816855 Tarenaya hassleriana HOM05D002543 ORTHO05D002990 5.9e-11 71.2 45 77.8
GSVIVG01031272001 Vitis vinifera HOM05D002543 ORTHO05D002990 5.9e-11 71.2 45 77.8
COL.COLO4_05521 Corchorus olitorius HOM05D002543 ORTHO05D002990 7.7e-11 70.9 45 77.8
Eucgr.H03311 Eucalyptus grandis HOM05D002543 ORTHO05D002990 7.7e-11 70.9 45 77.8
CAN.G65.169 Capsicum annuum HOM05D002543 ORTHO05D002990 1.0e-10 70.5 45 77.8
Glyma.03G230000 Glycine max HOM05D002543 ORTHO05D002990 1.0e-10 70.5 45 75.6
Glyma.19G227700 Glycine max HOM05D002543 ORTHO05D002990 1.0e-10 70.5 45 75.6
HanXRQChr01g0008121 Helianthus annuus HOM05D002543 ORTHO05D002990 1.0e-10 70.5 45 77.8
HanXRQChr13g0388191 Helianthus annuus HOM05D002543 ORTHO05D002990 1.0e-10 70.5 45 77.8
Solyc06g073260.3 Solanum lycopersicum HOM05D002543 ORTHO05D002990 1.0e-10 70.5 45 77.8
Sopen06g029620 Solanum pennellii HOM05D002543 ORTHO05D002990 1.0e-10 70.5 45 77.8
PGSC0003DMG400026913 Solanum tuberosum HOM05D002543 ORTHO05D002990 1.0e-10 70.5 45 77.8
Migut.N00952 Erythranthe guttata HOM05D002543 ORTHO05D002990 1.3e-10 70.1 45 75.6
Atru.chr2.231 Acer truncatum HOM05D002543 ORTHO05D002990 1.7e-10 69.7 46 73.9
Ah.04g158450 Amaranthus hybridus HOM05D002543 ORTHO05D002990 1.7e-10 69.7 46 71.7
EL10Ac4g09505 Beta vulgaris HOM05D002543 ORTHO05D002990 1.7e-10 69.7 46 73.9
AUR62000430 Chenopodium quinoa HOM05D002543 ORTHO05D002990 1.7e-10 69.7 46 71.7
AUR62006776 Chenopodium quinoa HOM05D002543 ORTHO05D002990 1.7e-10 69.7 46 71.7
Lj1g0015240 Lotus japonicus HOM05D002543 ORTHO05D002990 1.7e-10 69.7 45 75.6
TPR.G1672 Trifolium pratense HOM05D002543 ORTHO05D002990 1.7e-10 69.7 45 75.6
Gohir.A11G274700 Gossypium hirsutum HOM05D002543 ORTHO05D002990 2.2e-10 69.3 45 75.6
Medtr7g111860 Medicago truncatula HOM05D002543 ORTHO05D002990 2.2e-10 69.3 45 75.6
Psat3g014320 Pisum sativum HOM05D002543 ORTHO05D002990 2.2e-10 69.3 45 75.6
arahy.Tifrunner.gnm1.ann1.D8LL59 Arachis hypogaea HOM05D002543 ORTHO05D021537 2.9e-10 68.9 46 71.7
Ca_09289_v3 Cicer arietinum L. HOM05D002543 ORTHO05D002990 2.9e-10 68.9 45 75.6
Lju99A11T81 Lonicera japonica HOM05D002543 ORTHO05D002990 2.9e-10 68.9 45 75.6
Thecc.05G326100 Theobroma cacao HOM05D002543 ORTHO05D002990 2.9e-10 68.9 45 75.6
AagrBONN_evm.TU.Sc2ySwM_117.679 Anthoceros agrestis HOM05D002543 ORTHO05D002990 3.8e-10 68.6 45 73.3
Ciclev10001494m.g Citrus clementina HOM05D002543 ORTHO05D002990 5.0e-10 68.2 45 73.3
DCAR_005274 Daucus carota HOM05D002543 ORTHO05D002990 5.0e-10 68.2 45 73.3
PGR031G1645 Punica granatum HOM05D002543 ORTHO05D002990 5.0e-10 68.2 43 76.7
SalBow7G2281 Salvia bowleyana HOM05D002543 ORTHO05D002990 5.0e-10 68.2 45 73.3
arahy.Tifrunner.gnm1.ann1.E4P10T Arachis hypogaea HOM05D002543 ORTHO05D002990 6.5e-10 67.8 42 78.6
arahy.Tifrunner.gnm1.ann1.GJPT5D Arachis hypogaea HOM05D002543 ORTHO05D002990 6.5e-10 67.8 42 78.6
Hund21861 Selenicereus undatus HOM05D002543 ORTHO05D002990 1.1e-09 67.0 43 74.4
Cre10.g435800 Chlamydomonas reinhardtii HOM05D002543 ORTHO05D002990 1.9e-09 66.2 46 69.6
Zm00001eb261910 Zea mays HOM05D002543 ORTHO05D002990 3.2e-09 65.5 46 76.1
Duzib177G1067 Durio zibethinus HOM05D002543 ORTHO05D002990 4.2e-09 65.1 45 71.1
Mapoly0014s0058 Marchantia polymorpha HOM05D002543 ORTHO05D002990 7.2e-09 64.3 45 71.1
CBR_g216 Chara braunii HOM05D002543 ORTHO05D002990 1.6e-08 63.2 45 66.7
RcHm_v2.0_Chr2g0172991 Rosa chinensis HOM05D000598 ORTHO05D000480 2.1e-08 62.8 38 76.3
Sabra13G0005200 Salix brachista HOM05D002543 ORTHO05D002990 2.7e-08 62.4 52 65.4
HanXRQChr09g0252291 Helianthus annuus HOM05D002543 ORTHO05D002990 3.6e-08 62.0 45 71.1
arahy.Tifrunner.gnm1.ann1.B43GKP Arachis hypogaea HOM05D001103 ORTHO05D018483 3.0e-07 58.9 42 66.7
FvH4_3g27511 Fragaria vesca HOM05D004650 ORTHO05D196925 2.0e-06 56.2 28 92.9
MD17G1029700 Malus domestica HOM05D000598 ORTHO05D000480 5.7e-06 54.7 40 62.5


User provided reference genes

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