Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 2221.8 1147 100.0
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1937.9 1172 87.5
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1936.8 1172 87.5
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1935.6 1172 87.4
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1828.9 1175 83.0
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1815.8 1175 83.3
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 1529.6 1197 71.4
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1393.3 1192 66.9
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1313.5 1209 61.9
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1286.2 1198 60.9
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1280.4 1304 58.2
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1268.4 1213 59.4
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 1262.7 1224 59.6
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1256.9 937 72.4
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1252.3 1133 61.5
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1248.8 1283 56.3
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1246.1 1229 58.1
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1243.0 1232 58.1
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1240.3 1232 58.0
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1233.4 1223 58.5
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1228.4 1231 58.3
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1224.2 1231 58.2
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 1220.7 1268 57.3
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1213.7 1210 57.1
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1213.4 1191 60.7
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1209.1 1173 59.0
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1203.3 1275 55.5
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1197.6 1229 57.2
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1195.3 1217 56.5
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1190.3 1209 56.8
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1187.2 1225 55.6
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1186.4 1260 54.8
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1186.0 1028 63.0
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1181.0 1120 59.4
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1179.9 1227 55.4
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1175.2 1001 63.2
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1172.9 1293 52.8
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1169.8 1217 55.3
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 1166.8 1220 55.9
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 1166.0 1219 56.3
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1165.2 1226 55.1
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1162.1 1296 53.2
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1161.7 1005 62.5
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1159.4 1107 59.4
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1157.5 988 63.1
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1157.5 1233 55.3
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1157.1 1225 54.4
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1155.2 947 66.0
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1153.7 909 69.4
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1149.4 1232 54.6
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1149.0 1231 55.3
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1147.5 1256 54.4
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1146.7 1239 54.2
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 1143.3 1113 57.1
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1142.5 996 61.8
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1141.3 995 61.6
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1138.3 1235 54.3
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1127.1 1291 52.7
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1122.5 983 63.2
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 1120.9 1170 54.7
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1117.1 1155 55.6
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 0.0e+00 1112.1 973 61.7
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 0.0e+00 1111.7 1163 56.3
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1103.6 1300 51.8
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 0.0e+00 1099.7 971 61.2
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1097.8 974 61.2
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 0.0e+00 1097.0 971 61.1
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 1090.1 1004 60.6
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 0.0e+00 1080.9 1173 54.3
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 7.8e-312 1073.5 1294 51.4
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 3.8e-309 1065.1 1318 50.2
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 3.5e-302 1042.0 1292 50.6
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 1.5e-300 1036.6 989 57.1
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 1.7e-293 1013.1 1260 49.2
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 8.6e-293 1010.7 987 58.3
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 1.2e-286 990.3 863 63.4
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 8.9e-282 974.2 798 68.3
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 1.5e-281 973.4 1044 55.1
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 1.3e-280 970.3 692 75.1
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.6e-278 963.4 928 58.6
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 3.9e-277 958.7 971 57.3
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 4.7e-275 951.8 897 60.6
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 6.2e-275 951.4 1011 56.4
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 3.1e-274 949.1 882 59.5
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 1.7e-272 943.3 1107 50.9
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 3.2e-263 912.5 1166 47.9
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 3.3e-260 902.5 1055 50.5
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 3.9e-245 852.4 999 48.3
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 6.9e-242 841.6 1002 47.5
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 1.9e-239 833.6 767 59.6
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 7.9e-238 828.2 765 59.2
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 3.4e-233 812.8 993 47.1
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 1.1e-226 791.2 689 60.8
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 7.7e-225 785.0 621 67.6
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.3e-220 769.6 1030 45.0
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 1.4e-210 737.6 1213 41.1
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.8e-210 737.3 1044 43.8
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 4.4e-196 689.5 1073 43.7
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 2.8e-190 670.2 722 55.7
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 1.1e-175 621.7 556 60.4
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 2.6e-164 583.9 511 60.5
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 1.9e-162 577.8 718 50.8
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 9.6e-159 565.5 326 90.8
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 1.4e-141 508.4 401 71.6
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 2.9e-139 500.7 433 62.8
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 8.4e-139 499.2 448 62.1
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 5.6e-135 486.5 790 40.6
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.0e-131 475.7 831 37.8
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 7.9e-121 439.5 356 66.6
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.8e-112 411.8 454 54.2
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 5.1e-112 410.2 250 87.6
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.2e-100 372.5 228 87.3
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 1.1e-85 322.8 407 43.7
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 1.2e-60 239.6 201 63.2
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 3.0e-59 235.0 207 59.9
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 5.1e-59 234.2 158 71.5
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.1e-57 228.8 553 32.5
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 1.4e-56 226.1 360 41.4
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 1.8e-56 225.7 182 69.8
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 3.4e-55 221.5 165 66.7
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.9e-53 215.7 172 62.8
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 2.1e-52 212.2 200 55.5
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.7e-51 209.1 287 42.2
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 1.3e-46 193.0 737 27.8
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 4.9e-46 191.0 174 58.0
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 1.5e-42 179.5 111 82.9
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 1.8e-40 172.6 738 25.9
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 5.8e-39 167.5 115 73.9
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 4.9e-38 164.5 175 53.7
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 2.4e-37 162.2 151 55.6
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 3.2e-37 161.8 133 65.4
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 5.4e-37 161.0 136 57.4
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 4.6e-36 157.9 867 23.8
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 4.6e-36 157.9 120 69.2
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.1e-34 153.3 773 24.2
MD07G1245800 Malus domestica HOM05D002705 ORTHO05D004955 1.5e-34 152.9 212 54.2
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 4.3e-34 151.4 785 24.1
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.4e-32 145.6 178 48.3
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 9.9e-31 140.2 115 65.2
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.7e-30 139.4 481 28.7
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 1.9e-29 136.0 749 24.3
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 9.3e-29 133.7 127 59.1
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 2.1e-28 132.5 792 23.9
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.1e-25 122.5 846 23.0
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 1.8e-24 119.4 71 84.5
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 7.6e-23 114.0 130 53.8
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.0e-22 113.6 762 23.0
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 1.7e-22 112.8 82 64.6
CBR_g55305 Chara braunii HOM05D002705 ORTHO05D004955 2.2e-22 112.5 105 50.5
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 8.7e-19 100.5 307 29.6
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 5.7e-18 97.8 69 75.4
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 4.1e-16 91.7 262 33.6
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-15 89.4 326 26.4
FvH4_3g31690 Fragaria vesca HOM05D000769 ORTHO05D000598 6.5e-14 84.3 45 91.1
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 9.3e-13 80.5 275 24.7
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.7e-12 79.0 128 39.8
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 2.5e-10 72.4 254 25.2
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 7.4e-10 70.9 132 36.4
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 1.4e-08 66.6 90 54.4
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 1.5e-07 63.2 721 23.6


User provided reference genes

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