Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4791 Fragaria x ananassa HOM05D004190 ORTHO05D022494 1.6e-88 329.3 160 100.0
FAN14G3185 Fragaria x ananassa HOM05D022761 ORTHO05D022494 6.8e-87 323.9 161 98.8
FvH4_6g13651 Fragaria vesca HOM05D022761 ORTHO05D022494 5.7e-86 320.9 161 98.1
Duzib093G1405 Durio zibethinus HOM05D006496 ORTHO05D004692 1.4e-20 103.6 160 38.8
Thhalv10014530m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 1.1e-12 77.4 152 30.3
GSVIVG01025031001 Vitis vinifera HOM05D006496 ORTHO05D008390 1.9e-12 76.6 144 32.6
Actinidia07264 Actinidia chinensis HOM05D004190 ORTHO05D004692 2.5e-12 76.3 128 32.0
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 3.2e-12 75.9 129 35.7
Thecc.05G039400 Theobroma cacao HOM05D014374 ORTHO05D020491 4.2e-12 75.5 55 60.0
TWI31G0561 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 7.1e-12 74.7 129 34.1
Carub.0008s2005 Capsella rubella HOM05D004190 ORTHO05D004692 9.3e-12 74.3 140 32.1
FvH4_3g36180 Fragaria vesca HOM05D004190 ORTHO05D004692 9.3e-12 74.3 136 33.1
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 1.2e-11 73.9 127 33.1
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 1.2e-11 73.9 127 33.9
Rhsim05G0193300 Rhododendron simsii HOM05D022761 ORTHO05D022494 1.2e-11 73.9 117 32.5
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 1.6e-11 73.6 131 32.8
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 2.1e-11 73.2 127 33.9
FAN11G2049 Fragaria x ananassa HOM05D004190 ORTHO05D004692 2.7e-11 72.8 137 33.6
RhsimUnG0081700 Rhododendron simsii HOM05D022761 ORTHO05D022494 2.7e-11 72.8 117 31.6
RcHm_v2.0_Chr5g0064931 Rosa chinensis HOM05D004190 ORTHO05D004692 4.6e-11 72.0 137 33.6
SalBow3G1961 Salvia bowleyana HOM05D006496 ORTHO05D008390 4.6e-11 72.0 135 32.6
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 4.6e-11 72.0 127 31.5
THA.LOC104810778 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 4.6e-11 72.0 148 32.4
FAN25G3130 Fragaria x ananassa HOM05D004190 ORTHO05D004692 7.9e-11 71.2 119 33.6
SGA_v2.0_scaffold61G21263 Striga asiatica HOM05D006496 ORTHO05D008390 7.9e-11 71.2 128 36.7
FAN16G2398 Fragaria x ananassa HOM05D004190 ORTHO05D004692 1.0e-10 70.9 136 31.6
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 1.3e-10 70.5 130 31.5
Solyc11g068740.2 Solanum lycopersicum HOM05D004190 ORTHO05D004692 1.3e-10 70.5 132 33.3
Sopen11g027450 Solanum pennellii HOM05D004190 ORTHO05D004692 1.3e-10 70.5 132 33.3
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 1.3e-10 70.5 124 36.3
CSS0042381 Camellia sinensis var. sinensis HOM05D006496 ORTHO05D008390 1.8e-10 70.1 132 31.8
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 1.8e-10 70.1 125 31.2
Sp6g21060 Schrenkiella parvula HOM05D004190 ORTHO05D004692 1.8e-10 70.1 138 29.7
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 2.3e-10 69.7 127 28.3
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 3.0e-10 69.3 151 30.5
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 3.9e-10 68.9 153 29.4
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 3.9e-10 68.9 129 30.2
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 3.9e-10 68.9 124 31.5
AT5G59380 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 5.1e-10 68.6 140 30.7
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 5.1e-10 68.6 130 32.3
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 5.1e-10 68.6 134 30.6
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 5.1e-10 68.6 132 33.3
TWI75G0988 Tripterygium wilfordii HOM05D006496 ORTHO05D008390 5.1e-10 68.6 121 29.8
PGSC0003DMG400026344 Solanum tuberosum HOM05D004190 ORTHO05D004692 6.7e-10 68.2 129 32.6
CANSAT54G1895 Cannabis sativa HOM05D004190 ORTHO05D004692 8.7e-10 67.8 147 29.9
AT3G46580 Arabidopsis thaliana HOM05D004190 ORTHO05D004692 1.5e-09 67.0 164 28.7
CARHR285750 Cardamine hirsuta HOM05D004190 ORTHO05D004692 1.5e-09 67.0 140 32.1
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.5e-09 67.0 133 31.6
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 1.5e-09 67.0 127 29.1
Aa31LG4G15580 Aethionema arabicum HOM05D004190 ORTHO05D004692 2.5e-09 66.2 136 32.4
Ah.08g218920 Amaranthus hybridus HOM05D006496 ORTHO05D008390 2.5e-09 66.2 129 27.9
AUR62001835 Chenopodium quinoa HOM05D006496 ORTHO05D008390 2.5e-09 66.2 135 25.9
BraA03t10485Z Brassica rapa HOM05D004190 ORTHO05D004692 3.3e-09 65.9 135 29.6
BraA10t43742Z Brassica rapa HOM05D000173 ORTHO05D000316 3.3e-09 65.9 144 29.9
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 3.3e-09 65.9 133 31.6
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 3.3e-09 65.9 135 30.4
THA.LOC104814877 Tarenaya hassleriana HOM05D004190 ORTHO05D004692 3.3e-09 65.9 165 30.3
AL8G35820 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 4.3e-09 65.5 141 29.1
CAN.G1733.5 Capsicum annuum HOM05D004190 ORTHO05D004692 4.3e-09 65.5 135 31.1
AUR62009623 Chenopodium quinoa HOM05D006496 ORTHO05D008390 4.3e-09 65.5 135 25.2
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 4.3e-09 65.5 170 27.6
Potri.009G027600 Populus trichocarpa HOM05D006496 ORTHO05D008390 4.3e-09 65.5 133 29.3
Hund04996 Selenicereus undatus HOM05D006496 ORTHO05D008390 4.3e-09 65.5 149 28.9
Sc24g0002450 Simmondsia chinensis HOM05D004190 ORTHO05D004692 4.3e-09 65.5 128 33.6
PGSC0003DMG400024773 Solanum tuberosum HOM05D004190 ORTHO05D004692 4.3e-09 65.5 122 30.3
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 5.7e-09 65.1 168 28.6
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 5.7e-09 65.1 168 28.6
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 5.7e-09 65.1 168 28.6
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 9.7e-09 64.3 136 27.9
vmacro03111 Vaccinium macrocarpon HOM05D006496 ORTHO05D008390 9.7e-09 64.3 124 28.2
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 1.3e-08 63.9 131 29.8
MD03G1099500 Malus domestica HOM05D006496 ORTHO05D008390 1.3e-08 63.9 143 32.9
A03p11480 Brassica napus HOM05D006496 ORTHO05D008390 2.2e-08 63.2 132 31.8
BraA03t10462Z Brassica rapa HOM05D006496 ORTHO05D008390 2.2e-08 63.2 132 31.8
TAR623G1294 Trochodendron aralioides HOM05D004190 ORTHO05D004692 2.2e-08 63.2 130 31.5
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.8e-08 62.8 133 30.8
BcaB01g04590 Brassica carinata HOM05D004190 ORTHO05D004692 3.7e-08 62.4 140 26.4
BolC1t03263H Brassica oleracea HOM05D004190 ORTHO05D004692 3.7e-08 62.4 163 27.0
CAN.G745.23 Capsicum annuum HOM05D004190 ORTHO05D004692 3.7e-08 62.4 135 31.1
CiPaw.13G093900 Carya illinoinensis HOM05D004190 ORTHO05D004692 3.7e-08 62.4 127 28.3
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 3.7e-08 62.4 129 31.0
BcaC04g19780 Brassica carinata HOM05D004190 ORTHO05D004692 4.8e-08 62.0 145 29.0
BcaC09g49754 Brassica carinata HOM05D004190 ORTHO05D004692 4.8e-08 62.0 163 27.0
C01p33300 Brassica napus HOM05D004190 ORTHO05D004692 4.8e-08 62.0 163 27.0
C09p51780 Brassica napus HOM05D000173 ORTHO05D004692 4.8e-08 62.0 145 29.0
BolC9t58040H Brassica oleracea HOM05D000173 ORTHO05D004692 4.8e-08 62.0 145 29.0
BraA01t02543Z Brassica rapa HOM05D004190 ORTHO05D004692 4.8e-08 62.0 163 27.0
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 4.8e-08 62.0 166 28.3
Sp5g15120 Schrenkiella parvula HOM05D004190 ORTHO05D004692 4.8e-08 62.0 158 26.6
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 6.3e-08 61.6 137 28.5
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 6.3e-08 61.6 141 29.1
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 6.3e-08 61.6 146 27.4
Oeu048854.1 Olea europaea HOM05D004190 ORTHO05D004692 8.2e-08 61.2 132 27.3
AL8G36350 Arabidopsis lyrata HOM05D006496 ORTHO05D008390 1.1e-07 60.8 131 32.1
AL5G25450 Arabidopsis lyrata HOM05D004190 ORTHO05D004692 1.8e-07 60.1 163 25.2
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.4e-07 59.7 146 27.4
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 2.4e-07 59.7 145 26.2
Aa31sc23G430 Aethionema arabicum HOM05D004190 ORTHO05D004692 3.1e-07 59.3 168 26.2
Carub.0005s1285 Capsella rubella HOM05D004190 ORTHO05D004692 3.1e-07 59.3 135 28.1
Lsat_1_v5_gn_3_111560 Lactuca sativa HOM05D004190 ORTHO05D004692 4.1e-07 58.9 159 27.7
Manes.04G031000 Manihot esculenta HOM05D006496 ORTHO05D008390 4.1e-07 58.9 150 26.7
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 5.3e-07 58.5 132 29.5
CAN.G1733.7 Capsicum annuum HOM05D000006 ORTHO05D004030 6.9e-07 58.2 119 30.3
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 9.0e-07 57.8 141 27.0
Hma1.2p1_0220F.1_g093040 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 1.2e-06 57.4 106 31.1
Hma1.2p1_1227F.1_g268580 Hydrangea macrophylla HOM05D004190 ORTHO05D004692 1.2e-06 57.4 106 31.1
Cc01_g08740 Coffea canephora HOM05D004190 ORTHO05D004692 2.0e-06 56.6 155 26.5
AT5G59800 Arabidopsis thaliana HOM05D006496 ORTHO05D008390 3.4e-06 55.8 144 31.2
BcaB01g04586 Brassica carinata HOM05D004190 ORTHO05D004692 3.4e-06 55.8 135 25.9
QL01p033240 Quercus lobata HOM05D006496 ORTHO05D008390 3.4e-06 55.8 176 25.0
QL01p033291 Quercus lobata HOM05D006496 ORTHO05D008390 3.4e-06 55.8 176 25.0
PGSC0003DMG400044882 Solanum tuberosum HOM05D004190 ORTHO05D004692 5.9e-06 55.1 70 38.6
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 7.7e-06 54.7 142 26.1
SHI05942 Sapria himalayana HOM05D004190 ORTHO05D004692 7.7e-06 54.7 131 27.5


User provided reference genes

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