Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4009 Fragaria x ananassa HOM05D003367 ORTHO05D029439 8.9e-96 353.6 179 100.0
FAN04G0015 Fragaria x ananassa HOM05D003022 ORTHO05D003363 4.1e-24 115.5 77 79.2
FvH4_1g15471 Fragaria vesca HOM05D003367 ORTHO05D029439 1.6e-20 103.6 78 70.5
FAN25G3055 Fragaria x ananassa HOM05D003022 ORTHO05D029439 4.0e-19 99.0 151 49.0
TAR381G0223 Trochodendron aralioides HOM05D003367 ORTHO05D004284 1.6e-12 77.0 70 60.0
GSVIVG01018803001 Vitis vinifera HOM05D003367 ORTHO05D004284 1.6e-12 77.0 70 60.0
C07p25520 Brassica napus HOM05D003367 ORTHO05D004284 2.7e-12 76.3 70 58.6
FvH4_1g12010 Fragaria vesca HOM05D003367 ORTHO05D004284 2.7e-12 76.3 70 58.6
FAN19G0129 Fragaria x ananassa HOM05D003367 ORTHO05D004284 2.7e-12 76.3 70 58.6
FAN26G0117 Fragaria x ananassa HOM05D003367 ORTHO05D004284 2.7e-12 76.3 70 58.6
FAN28G2312 Fragaria x ananassa HOM05D003367 ORTHO05D004284 2.7e-12 76.3 70 58.6
RcHm_v2.0_Chr2g0099631 Rosa chinensis HOM05D003367 ORTHO05D004284 2.7e-12 76.3 70 58.6
Ah.05g168650 Amaranthus hybridus HOM05D003367 ORTHO05D004284 3.6e-12 75.9 70 58.6
Manes.01G144700 Manihot esculenta HOM05D003367 ORTHO05D004284 3.6e-12 75.9 70 60.0
TAR628G1446 Trochodendron aralioides HOM05D003367 ORTHO05D004284 3.6e-12 75.9 70 60.0
unitig_749.g13597 Utricularia gibba HOM05D003367 ORTHO05D004284 3.6e-12 75.9 79 55.7
Eucgr.J02407 Eucalyptus grandis HOM05D003367 ORTHO05D004284 4.7e-12 75.5 70 57.1
Hma1.2p1_0266F.1_g106820 Hydrangea macrophylla HOM05D003367 ORTHO05D004284 4.7e-12 75.5 70 58.6
COL.COLO4_21932 Corchorus olitorius HOM05D003367 ORTHO05D004284 8.0e-12 74.7 70 58.6
DCAR_017348 Daucus carota HOM05D003367 ORTHO05D004284 8.0e-12 74.7 49 75.5
FAN23G1403 Fragaria x ananassa HOM05D003367 ORTHO05D004284 8.0e-12 74.7 70 57.1
Nitab4.5_0006764g0050 Nicotiana tabacum HOM05D003367 ORTHO05D004284 8.0e-12 74.7 78 55.1
Nitab4.5_0009266g0050 Nicotiana tabacum HOM05D003367 ORTHO05D004284 8.0e-12 74.7 78 55.1
SHI08572 Sapria himalayana HOM05D003367 ORTHO05D004284 8.0e-12 74.7 70 58.6
Cpa.g.sc6.230 Carica papaya HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 57.1
Cfa006958 Carpinus fangiana HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 57.1
Ca_24909_v3 Cicer arietinum L. HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 58.6
Ciclev10025903m.g Citrus clementina HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 57.1
Haze_03793 Corylus avellana HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 57.1
Dinv33616 Davidia involucrata HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 57.1
Glyma.01G167500 Glycine max HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 58.6
Glyma.11G075700 Glycine max HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 58.6
Gohir.A11G176600 Gossypium hirsutum HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 57.1
Gohir.A12G060200 Gossypium hirsutum HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 57.1
Gohir.D11G184400 Gossypium hirsutum HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 57.1
Gorai.007G196100 Gossypium raimondii HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 57.1
HanXRQChr11g0325961 Helianthus annuus HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 57.1
Lj2g0022271 Lotus japonicus HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 58.6
Lalb_Chr16g0377551 Lupinus albus HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 58.6
Manes.02G102800 Manihot esculenta HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 57.1
Nn1g09238 Nelumbo nucifera HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 57.1
Peaxi162Scf00256g00031 Petunia axillaris HOM05D003367 ORTHO05D004284 1.0e-11 74.3 78 55.1
Potri.007G013900 Populus trichocarpa HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 58.6
PGR119G0157 Punica granatum HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 57.1
QL06p033636 Quercus lobata HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 57.1
Sabra07G0011300 Salix brachista HOM05D003367 ORTHO05D004284 1.0e-11 74.3 70 58.6
Atru.chr3.783 Acer truncatum HOM05D003367 ORTHO05D004284 1.4e-11 73.9 49 75.5
EL10Ac1g00676 Beta vulgaris HOM05D003367 ORTHO05D004284 1.4e-11 73.9 49 73.5
BcaC06g34695 Brassica carinata HOM05D003367 ORTHO05D004284 1.4e-11 73.9 70 57.1
BolC7t43072H Brassica oleracea HOM05D003367 ORTHO05D004284 1.4e-11 73.9 70 57.1
CSS0016130 Camellia sinensis var. sinensis HOM05D003367 ORTHO05D004284 1.4e-11 73.9 49 75.5
CSS0047804 Camellia sinensis var. sinensis HOM05D003367 ORTHO05D004284 1.4e-11 73.9 49 75.5
AUR62023322 Chenopodium quinoa HOM05D003367 ORTHO05D004284 1.4e-11 73.9 70 55.7
AUR62038010 Chenopodium quinoa HOM05D003367 ORTHO05D004284 1.4e-11 73.9 70 55.7
Migut.H01145 Erythranthe guttata HOM05D003367 ORTHO05D004284 1.4e-11 73.9 49 75.5
Medtr5g021760 Medicago truncatula HOM05D003367 ORTHO05D004284 1.4e-11 73.9 49 75.5
Oeu048453.1 Olea europaea HOM05D003367 ORTHO05D004284 1.4e-11 73.9 49 75.5
Phvul.002G110300 Phaseolus vulgaris HOM05D003367 ORTHO05D004284 1.4e-11 73.9 70 57.1
Hund26926 Selenicereus undatus HOM05D003367 ORTHO05D004284 1.4e-11 73.9 49 73.5
unitig_21.g20543 Utricularia gibba HOM05D003367 ORTHO05D004284 1.4e-11 73.9 70 55.7
VMungo1215G0198 Vigna mungo HOM05D003367 ORTHO05D004284 1.4e-11 73.9 49 75.5
ATR0147G007 Amborella trichopoda HOM05D003367 ORTHO05D004284 1.8e-11 73.6 70 55.7
ATR0989G001 Amborella trichopoda HOM05D003367 ORTHO05D004284 1.8e-11 73.6 70 55.7
CAN.G843.17 Capsicum annuum HOM05D003367 ORTHO05D004284 1.8e-11 73.6 78 53.8
Cc07_g10580 Coffea canephora HOM05D003367 ORTHO05D004284 1.8e-11 73.6 70 55.7
Lj2A466T49 Lonicera japonica HOM05D003367 ORTHO05D004284 1.8e-11 73.6 70 57.1
Lj2A474T35 Lonicera japonica HOM05D003367 ORTHO05D004284 1.8e-11 73.6 70 57.1
MD02G1134100 Malus domestica HOM05D003367 ORTHO05D004284 1.8e-11 73.6 70 57.1
Prupe.7G166700 Prunus persica HOM05D003367 ORTHO05D004284 1.8e-11 73.6 70 55.7
Hund17160 Selenicereus undatus HOM05D003367 ORTHO05D004284 1.8e-11 73.6 70 55.7
Solyc03g118270.1 Solanum lycopersicum HOM05D003367 ORTHO05D004284 1.8e-11 73.6 78 53.8
Sopen03g037180 Solanum pennellii HOM05D003367 ORTHO05D004284 1.8e-11 73.6 78 53.8
PGSC0003DMG400014178 Solanum tuberosum HOM05D003367 ORTHO05D004284 1.8e-11 73.6 78 53.8
Aqoxy6G02322 Aquilegia oxysepala HOM05D003367 ORTHO05D004284 2.3e-11 73.2 70 57.1
CiPaw.08G133300 Carya illinoinensis HOM05D003367 ORTHO05D004284 2.3e-11 73.2 70 55.7
ECA232G0085 Erigeron canadensis HOM05D003367 ORTHO05D004284 2.3e-11 73.2 70 55.7
FvH4_2g13942 Fragaria vesca HOM05D003367 ORTHO05D029439 2.3e-11 73.2 61 62.3
Lalb_Chr05g0212431 Lupinus albus HOM05D003367 ORTHO05D004284 2.3e-11 73.2 49 75.5
SGA_v2.0_scaffold137G35099 Striga asiatica HOM05D003367 ORTHO05D004284 2.3e-11 73.2 70 57.1
TWI09G0379 Tripterygium wilfordii HOM05D003367 ORTHO05D004284 2.3e-11 73.2 70 55.7
Duzib147G0565 Durio zibethinus HOM05D003367 ORTHO05D004284 3.0e-11 72.8 70 55.7
Lsat_1_v5_gn_4_149120 Lactuca sativa HOM05D003367 ORTHO05D004284 3.0e-11 72.8 49 73.5
Medtr5g021770 Medicago truncatula HOM05D003367 ORTHO05D004284 3.0e-11 72.8 49 73.5
MSTRG.23415 Avicennia marina HOM05D003367 ORTHO05D004284 4.0e-11 72.4 70 54.3
BcaB02g10035 Brassica carinata HOM05D003367 ORTHO05D004284 4.0e-11 72.4 70 57.1
A07p17560 Brassica napus HOM05D003367 ORTHO05D004284 4.0e-11 72.4 70 57.1
BraA07t29476Z Brassica rapa HOM05D003367 ORTHO05D004284 4.0e-11 72.4 70 57.1
Carub.0008s2821 Capsella rubella HOM05D003367 ORTHO05D004284 4.0e-11 72.4 70 57.1
PGR142G3173 Punica granatum HOM05D003367 ORTHO05D004284 4.0e-11 72.4 49 73.5
Rhsim08G0034400 Rhododendron simsii HOM05D003367 ORTHO05D004284 4.0e-11 72.4 49 71.4
TWI73G0147 Tripterygium wilfordii HOM05D003367 ORTHO05D004284 4.0e-11 72.4 70 55.7
vmacro18421 Vaccinium macrocarpon HOM05D003367 ORTHO05D004284 4.0e-11 72.4 49 71.4
Zm00001eb270090 Zea mays HOM05D003367 ORTHO05D004284 4.0e-11 72.4 76 55.3
Aa31LG1G14780 Aethionema arabicum HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
Aa31LG4G19240 Aethionema arabicum HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
AL5G31590 Arabidopsis lyrata HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
AL8G45240 Arabidopsis lyrata HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
AT5G66280 Arabidopsis thaliana HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
BcaB07g29667 Brassica carinata HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
BcaC03g18415 Brassica carinata HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
BcaC06g33050 Brassica carinata HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
BcaC09g50085 Brassica carinata HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
BcaNung00396 Brassica carinata HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
A01p23590 Brassica napus HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
A03p48180 Brassica napus HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
C01p29280 Brassica napus HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
C02p64940 Brassica napus HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
C07p46210 Brassica napus HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
BolC1t02854H Brassica oleracea HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
BolC7t45137H Brassica oleracea HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
BraA01t02266Z Brassica rapa HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
BraA03t13926Z Brassica rapa HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
Carub.0005s1756 Capsella rubella HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
CARHR160760 Cardamine hirsuta HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
CARHR281430 Cardamine hirsuta HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
ClCG07G008430 Citrullus lanatus HOM05D003367 ORTHO05D004284 5.2e-11 72.0 70 55.7
MELO3C032603.2 Cucumis melo HOM05D003367 ORTHO05D004284 5.2e-11 72.0 70 55.7
CsaV3_4G005740 Cucumis sativus L. HOM05D003367 ORTHO05D004284 5.2e-11 72.0 70 55.7
Thhalv10010458m.g Eutrema salsugineum HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
Hma1.2p1_2281F.1_g318760 Hydrangea macrophylla HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 71.4
Nitab4.5_0004254g0040 Nicotiana tabacum HOM05D003367 ORTHO05D004284 5.2e-11 72.0 70 58.6
Psat2g155320 Pisum sativum HOM05D003367 ORTHO05D004284 5.2e-11 72.0 70 57.1
Sabra05G0095200 Salix brachista HOM05D003367 ORTHO05D004284 5.2e-11 72.0 70 55.7
Sp2g30320 Schrenkiella parvula HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
Sp5g11050 Schrenkiella parvula HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
Sopen02g028950 Solanum pennellii HOM05D003367 ORTHO05D004284 5.2e-11 72.0 70 58.6
Thecc.01G021100 Theobroma cacao HOM05D003367 ORTHO05D004284 5.2e-11 72.0 49 73.5
Actinidia22991 Actinidia chinensis HOM05D003367 ORTHO05D004284 6.8e-11 71.6 49 73.5
A02p44540 Brassica napus HOM05D003367 ORTHO05D004284 6.8e-11 71.6 49 73.5
BolC2t12552H Brassica oleracea HOM05D003367 ORTHO05D004284 6.8e-11 71.6 49 73.5
BraA02t09370Z Brassica rapa HOM05D003367 ORTHO05D004284 6.8e-11 71.6 49 73.5
Nn5g29270 Nelumbo nucifera HOM05D003367 ORTHO05D004284 6.8e-11 71.6 70 57.1
Sc23g0004000 Simmondsia chinensis HOM05D003367 ORTHO05D004284 6.8e-11 71.6 70 54.3
Solyc02g084210.1 Solanum lycopersicum HOM05D003367 ORTHO05D004284 6.8e-11 71.6 49 75.5
PGSC0003DMG400003633 Solanum tuberosum HOM05D003367 ORTHO05D004284 6.8e-11 71.6 49 75.5
Zm00001eb377770 Zea mays HOM05D003367 ORTHO05D004284 6.8e-11 71.6 51 66.7
AT3G51160 Arabidopsis thaliana HOM05D003367 ORTHO05D004284 8.8e-11 71.2 49 71.4
BcaB01g00545 Brassica carinata HOM05D003367 ORTHO05D004284 8.8e-11 71.2 49 71.4
A09p44210 Brassica napus HOM05D003367 ORTHO05D004284 8.8e-11 71.2 49 71.4
C08p26430 Brassica napus HOM05D003367 ORTHO05D004284 8.8e-11 71.2 49 71.4
BolC8t50260H Brassica oleracea HOM05D003367 ORTHO05D004284 8.8e-11 71.2 49 71.4
BraA09t39882Z Brassica rapa HOM05D003367 ORTHO05D004284 8.8e-11 71.2 49 71.4
Dinv40072 Davidia involucrata HOM05D003367 ORTHO05D004284 8.8e-11 71.2 66 59.1
ECA232G2169 Erigeron canadensis HOM05D003367 ORTHO05D004284 8.8e-11 71.2 70 54.3
MBI09_g43736_MAGBIO Magnolia biondii HOM05D003367 ORTHO05D004284 8.8e-11 71.2 70 54.3
MD15G1247100 Malus domestica HOM05D003367 ORTHO05D004284 8.8e-11 71.2 70 55.7
Os06g0137700 Oryza sativa ssp. japonica HOM05D003367 ORTHO05D004284 8.8e-11 71.2 55 63.6
Sed0007406 Sechium edule HOM05D003367 ORTHO05D004284 8.8e-11 71.2 70 55.7
THA.LOC104826596 Tarenaya hassleriana HOM05D003367 ORTHO05D004284 8.8e-11 71.2 49 71.4
CDE05G2114 Ceratophyllum demersum HOM05D003367 ORTHO05D004284 1.2e-10 70.9 49 71.4
CDE05G3324 Ceratophyllum demersum HOM05D003367 ORTHO05D004284 1.2e-10 70.9 49 71.4
Potri.005G116200 Populus trichocarpa HOM05D003367 ORTHO05D004284 1.2e-10 70.9 70 55.7
CDE04G2821 Ceratophyllum demersum HOM05D003367 ORTHO05D004284 1.5e-10 70.5 70 52.9
Duzib264G0302 Durio zibethinus HOM05D003367 ORTHO05D004284 1.5e-10 70.5 70 54.3
Nitab4.5_0005721g0010 Nicotiana tabacum HOM05D003367 ORTHO05D004284 1.5e-10 70.5 70 57.1
Peaxi162Scf00083g00083 Petunia axillaris HOM05D003367 ORTHO05D004284 1.5e-10 70.5 80 53.8
THA.LOC104821321 Tarenaya hassleriana HOM05D003367 ORTHO05D004284 1.5e-10 70.5 49 71.4
HPP92_002104 Vanilla planifolia HOM05D003367 ORTHO05D004284 1.5e-10 70.5 49 69.4
CDE02G3936 Ceratophyllum demersum HOM05D003367 ORTHO05D004284 2.6e-10 69.7 70 52.9
CANSAT78G2109 Cannabis sativa HOM05D003367 ORTHO05D004284 3.4e-10 69.3 70 52.9
Pp3c5_15180 Physcomitrium patens HOM05D003367 ORTHO05D004284 3.4e-10 69.3 51 68.6
Pp3c6_12710 Physcomitrium patens HOM05D003367 ORTHO05D004284 3.4e-10 69.3 51 68.6
Duzib187G0451 Durio zibethinus HOM05D003367 ORTHO05D004284 4.4e-10 68.9 70 54.3
PSO541G5137 Papaver somniferum HOM05D003367 ORTHO05D004284 4.4e-10 68.9 49 69.4
PSO675G4838 Papaver somniferum HOM05D003367 ORTHO05D004284 4.4e-10 68.9 49 69.4
CAN.G900.55 Capsicum annuum HOM05D003367 ORTHO05D004284 7.5e-10 68.2 59 64.4
Lsat_1_v5_gn_4_152740 Lactuca sativa HOM05D003367 ORTHO05D004284 9.8e-10 67.8 49 69.4
Mapoly0040s0032 Marchantia polymorpha HOM05D003367 ORTHO05D004284 2.8e-09 66.2 51 62.7
Mapoly0053s0025 Marchantia polymorpha HOM05D003367 ORTHO05D004284 3.7e-09 65.9 49 65.3
Mapoly0096s0039 Marchantia polymorpha HOM05D003367 ORTHO05D004284 3.7e-09 65.9 51 62.7
Mapoly0096s0040 Marchantia polymorpha HOM05D003367 ORTHO05D004284 3.7e-09 65.9 51 62.7
SMO146G0088 Selaginella moellendorffii HOM05D003367 ORTHO05D004284 6.3e-09 65.1 49 65.3
SEGI_09344 Sequoiadendron giganteum HOM05D003367 ORTHO05D004284 6.3e-09 65.1 51 62.7
AagrBONN_evm.TU.Sc2ySwM_228.4780 Anthoceros agrestis HOM05D003367 ORTHO05D004284 8.3e-09 64.7 49 65.3
Pp3c14_6460 Physcomitrium patens HOM05D003367 ORTHO05D004284 8.3e-09 64.7 51 64.7
BcaC03g18421 Brassica carinata HOM05D003367 ORTHO05D004284 1.4e-08 63.9 45 66.7
Pp3c17_11890 Physcomitrium patens HOM05D003367 ORTHO05D004284 1.4e-08 63.9 51 62.7
Gohir.A10G097800 Gossypium hirsutum HOM05D003367 ORTHO05D004284 3.1e-08 62.8 43 72.1
AagrBONN_evm.TU.Sc2ySwM_117.1676 Anthoceros agrestis HOM05D003367 ORTHO05D004284 4.1e-08 62.4 49 61.2
Oeu063338.1 Olea europaea HOM05D003367 ORTHO05D004284 2.0e-07 60.1 66 54.5
QL10p013176 Quercus lobata HOM05D003367 ORTHO05D004284 3.5e-07 59.3 70 47.1
CBR_g54109 Chara braunii HOM05D003367 ORTHO05D004284 1.0e-06 57.8 49 53.1
CBR_g50778 Chara braunii HOM05D003367 ORTHO05D004284 1.7e-06 57.0 49 53.1


User provided reference genes

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