Gene: AT5G66280

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G66280
  • Transcript Identifier AT5G66280.1
  • Gene Type Coding gene
  • Location Chr5 : 26476434-26477519 : positive

Gene Family Information

  • ID HOM05D003367
  • #Genes/#Species 203/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G66280.1
  • symbol GMD1
  • full_name GDP-D-mannose 4%2C6-dehydratase 1
  • uniprot Q9SNY3

Descriptions

  • Description GDP-D-mannose 4,6-dehydratase 1
  • Computational description GDP-D-mannose 4,6-dehydratase 1 (GMD1); FUNCTIONS IN: protein binding, GDP-mannose 4,6-dehydratase activity; INVOLVED IN: cellular metabolic process, GDP-mannose metabolic process, nucleotide-sugar metabolic process, metabolic process; LOCATED IN: intracellular; EXPRESSED IN: inflorescence meristem, root, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), GDP-mannose 4,6-dehydratase (InterPro:IPR006368); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G51160.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042351
IBA
IEA
Gene Ontology'de novo' GDP-L-fucose biosynthetic process1
GO:0019673
IEA
GOA DatabaseGDP-mannose metabolic process
GO:0019673
IBA
Gene OntologyGDP-mannose metabolic process1
GO:0019673
IEA
InterProGDP-mannose metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0008446
IEA
GOA DatabaseGDP-mannose 4,6-dehydratase activity
GO:0008446
IBA
Gene OntologyGDP-mannose 4,6-dehydratase activity1
GO:0008446
IEA
InterProGDP-mannose 4,6-dehydratase activity
GO:0016829
IEA
GOA Databaselyase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005794
ISM
Gene OntologyGolgi apparatus
GO:0009536
HDA
Gene Ontologyplastid3
GO:0005737
IBA
Gene Ontologycytoplasm1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR016040 NAD(P)-binding domain
IPR006368 GDP-mannose 4,6-dehydratase
IPR036291 NAD(P)-binding domain superfamily
Mapman id Description
3.13.2.1.1 Carbohydrate metabolism.nucleotide sugar biosynthesis.GDP-L-fucose biosynthesis.de novo biosynthesis.GDP-D-mannose 4,6-dehydratase (MUR1)