Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 2.6e-203 711.8 360 100.0
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 9.4e-145 517.3 300 91.0
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 4.5e-139 498.4 286 92.0
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 6.1e-136 488.0 286 91.3
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 1.3e-125 453.8 286 83.9
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 9.8e-110 401.0 290 75.5
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 5.4e-108 395.2 289 73.0
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 2.2e-93 346.7 296 67.2
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 6.2e-80 302.0 284 60.9
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 8.1e-80 301.6 297 56.9
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 1.5e-78 297.4 287 58.5
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 3.4e-78 296.2 287 56.1
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 2.9e-77 293.1 291 57.7
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 2.4e-76 290.0 307 55.4
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 4.2e-76 289.3 289 57.8
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 1.2e-75 287.7 292 56.8
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 3.5e-75 286.2 289 56.1
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 6.6e-74 282.0 284 56.7
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 1.9e-73 280.4 287 54.0
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 1.9e-73 280.4 284 56.3
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 3.6e-72 276.2 289 55.7
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 4.8e-72 275.8 282 55.3
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 1.1e-71 274.6 277 54.5
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 6.9e-71 271.9 287 56.4
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 6.9e-71 271.9 289 53.3
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 1.2e-70 271.2 281 55.5
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 2.0e-70 270.4 325 49.5
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 3.4e-70 269.6 288 55.9
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 1.3e-69 267.7 308 51.6
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 6.4e-69 265.4 279 54.1
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 1.1e-68 264.6 279 54.1
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 2.1e-67 260.4 296 50.7
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 6.0e-67 258.8 293 49.8
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 1.3e-66 257.7 281 54.4
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 3.9e-66 256.1 287 50.2
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 6.6e-66 255.4 293 49.8
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 7.3e-65 251.9 279 52.0
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 7.3e-65 251.9 287 53.7
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 1.3e-64 251.1 317 47.3
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 1.3e-64 251.1 286 49.7
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 1.3e-64 251.1 282 51.8
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 2.1e-64 250.4 277 52.3
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 2.8e-64 250.0 281 52.3
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 6.2e-64 248.8 211 61.1
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 6.2e-64 248.8 293 48.8
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 1.1e-63 248.1 284 51.8
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 2.0e-62 243.8 278 50.0
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 2.6e-62 243.4 278 52.5
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 5.8e-62 242.3 315 46.7
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 7.6e-62 241.9 287 49.8
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 2.9e-61 240.0 282 47.9
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 6.4e-61 238.8 281 49.8
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 1.1e-60 238.0 243 57.2
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 9.3e-60 235.0 281 52.0
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 1.2e-59 234.6 315 46.0
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 1.0e-58 231.5 213 56.8
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 5.1e-58 229.2 280 52.1
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 1.5e-57 227.6 272 51.8
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 1.9e-57 227.3 279 47.0
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 1.9e-57 227.3 281 46.3
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 1.9e-57 227.3 286 46.2
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 2.5e-57 226.9 281 46.3
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 3.3e-57 226.5 278 47.8
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 1.6e-56 224.2 289 48.1
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 2.1e-56 223.8 288 47.6
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 3.7e-56 223.0 277 47.7
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 4.0e-55 219.5 283 47.0
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 4.0e-55 219.5 214 54.2
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 5.3e-55 219.2 274 48.9
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 6.9e-55 218.8 286 44.8
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 6.9e-55 218.8 286 47.6
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 2.0e-54 217.2 288 45.5
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 3.8e-53 213.0 276 46.7
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 6.5e-53 212.2 251 52.2
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 1.9e-52 210.7 292 44.9
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 5.5e-52 209.1 271 47.6
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 3.5e-51 206.5 252 49.6
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 4.6e-51 206.1 213 53.5
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 6.0e-51 205.7 277 44.4
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 3.0e-50 203.4 280 46.1
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 9.6e-49 198.4 265 46.8
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 1.3e-48 198.0 242 48.8
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 1.3e-48 198.0 202 51.5
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 2.8e-48 196.8 250 48.0
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 4.8e-48 196.1 314 42.4
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 1.4e-47 194.5 323 41.5
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 3.1e-47 193.4 193 52.8
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 4.1e-47 193.0 287 40.8
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 2.0e-46 190.7 288 43.1
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 3.4e-46 189.9 272 43.0
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 5.9e-46 189.1 282 41.8
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 7.6e-46 188.7 280 42.5
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 1.0e-45 188.3 286 43.7
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 2.2e-45 187.2 300 40.3
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 7.2e-44 182.2 285 42.5
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 2.3e-42 177.2 298 41.9
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 1.1e-41 174.9 283 42.8
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 1.5e-41 174.5 273 41.0
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 2.8e-40 170.2 286 39.2
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 5.3e-39 166.0 274 39.4
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 9.0e-39 165.2 318 37.7
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.5e-38 164.5 137 58.4
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.4e-36 157.9 296 39.5
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.9e-36 157.5 329 37.4
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 7.2e-36 155.6 273 38.8
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 1.8e-34 151.0 200 45.5
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 5.1e-34 149.4 135 58.5
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 5.9e-30 136.0 193 42.5
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 2.1e-27 127.5 280 36.1
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 6.1e-27 125.9 287 34.1
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 2.3e-26 124.0 296 34.1
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 3.3e-25 120.2 161 45.3
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 9.7e-25 118.6 259 32.4
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 2.8e-24 117.1 190 41.1
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 5.0e-21 106.3 72 69.4
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 1.5e-20 104.8 225 33.8
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 1.5e-20 104.8 132 44.7
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 7.2e-20 102.4 134 44.0
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 1.8e-15 87.8 70 62.9
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 1.3e-13 81.6 91 51.6
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 2.1e-11 74.3 112 37.5
TAR636G2555 Trochodendron aralioides HOM05D005876 ORTHO05D007326 8.8e-10 68.9 114 43.9
COL.COLO4_27076 Corchorus olitorius HOM05D005876 ORTHO05D007326 1.5e-09 68.2 111 45.0
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 8.3e-08 62.4 109 34.9
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 1.6e-06 58.2 160 26.2
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 2.0e-06 57.8 43 62.8
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 2.0e-06 57.8 43 62.8


User provided reference genes

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