Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 0.0e+00 1233.8 650 100.0
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 0.0e+00 1189.9 650 96.6
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 0.0e+00 1187.9 650 96.9
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 0.0e+00 1186.0 650 96.3
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 0.0e+00 1109.4 650 91.2
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 0.0e+00 1097.8 650 89.7
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 2.5e-236 822.4 652 70.6
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 9.1e-223 777.3 648 67.4
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 2.4e-207 726.1 665 60.3
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 1.2e-206 723.8 662 61.0
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 2.0e-206 723.0 664 61.6
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 4.5e-206 721.8 660 62.6
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 1.5e-204 716.8 667 61.2
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 4.2e-204 715.3 663 61.7
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.2e-203 713.8 662 62.2
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 1.6e-203 713.4 668 61.1
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 1.0e-202 710.7 661 61.3
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 1.8e-202 709.9 665 62.1
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 6.8e-202 708.0 664 61.6
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 8.8e-202 707.6 663 61.4
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 3.4e-201 705.7 661 62.2
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 3.7e-200 702.2 664 60.5
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.4e-199 700.3 665 59.2
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 1.4e-199 700.3 663 61.7
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 2.4e-199 699.5 666 60.1
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.6e-198 696.8 660 60.0
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 4.5e-198 695.3 664 60.1
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 5.9e-198 694.9 667 60.1
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 7.7e-198 694.5 664 59.8
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 1.0e-197 694.1 660 59.8
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 1.3e-197 693.7 666 60.4
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.7e-197 693.3 660 59.7
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.1e-196 690.6 665 59.5
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 1.9e-196 689.9 664 59.6
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.9e-196 689.9 660 59.4
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 4.2e-196 688.7 667 59.4
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 8.0e-195 684.5 665 60.3
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.8e-194 683.3 671 58.4
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 4.0e-194 682.2 664 59.8
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 5.2e-194 681.8 660 59.5
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.7e-193 678.3 660 59.1
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 9.8e-193 677.6 668 58.4
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 1.7e-192 676.8 665 57.9
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 3.1e-191 672.5 664 59.6
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 4.1e-191 672.2 665 56.8
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 7.0e-191 671.4 667 58.5
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 1.6e-190 670.2 665 57.7
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 1.0e-189 667.5 666 59.2
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.3e-189 667.2 669 58.3
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 3.8e-189 665.6 664 59.5
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 3.8e-189 665.6 664 59.5
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 1.9e-188 663.3 668 59.0
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 7.3e-188 661.4 640 59.8
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 1.0e-186 657.5 664 57.8
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 4.4e-185 652.1 659 57.4
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 5.8e-185 651.7 667 57.6
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 4.9e-184 648.7 660 57.6
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 4.9e-184 648.7 663 57.8
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 2.7e-182 642.9 666 58.3
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 2.3e-181 639.8 658 57.1
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 1.5e-180 637.1 668 56.7
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 7.3e-180 634.8 662 56.0
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 2.1e-179 633.3 662 57.3
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.1e-178 630.9 660 55.8
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 1.3e-176 624.0 658 56.2
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 1.7e-176 623.6 667 56.5
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 2.2e-176 623.2 656 56.6
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 2.9e-176 622.9 660 56.8
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 3.7e-176 622.5 681 56.5
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 3.2e-175 619.4 658 55.8
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 9.2e-175 617.8 667 56.7
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 1.2e-174 617.5 660 55.3
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 2.7e-174 616.3 656 56.7
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 7.8e-174 614.8 659 56.1
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 7.8e-174 614.8 659 56.1
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 3.9e-173 612.5 660 55.9
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 3.3e-172 609.4 661 54.2
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 4.3e-172 609.0 667 55.6
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 9.5e-172 607.8 655 53.7
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 4.7e-171 605.5 675 54.7
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 4.7e-171 605.5 664 53.6
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 8.1e-171 604.7 655 56.3
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 8.1e-171 604.7 671 54.1
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.1e-170 604.4 675 54.7
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 3.1e-170 602.8 661 54.5
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.5e-169 600.5 661 55.1
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 3.4e-169 599.4 663 55.5
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 3.4e-169 599.4 661 54.5
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 9.9e-169 597.8 668 54.9
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.7e-168 595.9 616 56.5
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.1e-167 594.3 664 55.3
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 1.4e-167 594.0 657 52.8
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 5.4e-167 592.0 679 54.1
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 7.1e-167 591.7 656 53.5
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 7.8e-166 588.2 617 56.7
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 7.8e-166 588.2 655 53.1
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 1.3e-165 587.4 665 54.9
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 1.7e-165 587.0 662 54.2
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 2.3e-165 586.6 666 53.9
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 3.9e-165 585.9 666 55.0
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 6.6e-165 585.1 661 53.0
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 1.5e-164 583.9 661 53.4
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 4.3e-164 582.4 661 53.9
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 5.6e-164 582.0 661 53.7
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 9.5e-164 581.3 669 52.8
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 2.8e-163 579.7 663 53.1
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 3.6e-163 579.3 660 53.5
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 3.6e-163 579.3 658 53.3
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 3.6e-163 579.3 667 52.5
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 6.2e-163 578.6 671 53.2
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 1.8e-162 577.0 669 51.6
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 4.0e-162 575.9 661 54.3
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 5.2e-162 575.5 664 53.6
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 1.5e-161 573.9 670 53.4
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 1.7e-160 570.5 660 53.2
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 3.8e-160 569.3 671 51.3
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 2.4e-159 566.6 669 51.4
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 3.2e-159 566.2 659 54.8
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 1.6e-158 563.9 544 58.8
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.1e-158 563.5 552 58.2
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 2.1e-158 563.5 552 58.2
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 2.1e-158 563.5 687 52.1
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.3e-157 560.8 657 51.9
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 2.8e-155 553.1 657 51.8
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.1e-154 551.2 657 51.8
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 5.3e-154 548.9 675 50.1
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 6.9e-154 548.5 660 50.0
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 9.0e-154 548.1 690 49.1
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 1.5e-153 547.4 653 51.9
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 1.1e-151 541.2 685 49.3
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 2.4e-151 540.0 658 50.0
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 9.3e-151 538.1 658 51.7
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 1.6e-150 537.3 678 50.7
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.3e-149 534.3 664 50.3
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 1.9e-148 530.4 684 49.1
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 9.9e-145 518.1 661 48.7
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 6.4e-144 515.4 677 50.2
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 1.4e-143 514.2 660 48.3
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.8e-141 507.3 648 48.8
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 3.3e-140 503.1 656 49.2
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 1.5e-137 494.2 661 47.7
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 3.4e-137 493.0 666 46.7
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 3.5e-134 483.0 664 45.6
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 5.1e-133 479.2 647 50.7
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 8.2e-131 471.9 660 45.5
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 2.5e-127 460.3 614 47.2
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 2.8e-123 446.8 545 49.2
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 3.9e-117 426.4 616 45.6
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 3.1e-114 416.8 669 43.9
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 3.4e-113 413.3 659 43.4
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 1.6e-102 377.9 421 55.1
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 5.7e-100 369.4 401 54.1
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 2.0e-97 360.9 401 52.6
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 1.0e-96 358.6 656 41.3
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 5.0e-96 356.3 405 53.8
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 5.2e-93 346.3 671 40.5
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 2.5e-79 300.8 558 40.0
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.8e-77 294.7 542 39.7
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 1.8e-74 284.6 236 66.9
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 5.8e-68 263.1 312 50.3
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 1.2e-62 245.4 643 33.6
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 2.9e-59 234.2 409 39.6
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 1.9e-58 231.5 657 33.5
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 4.3e-47 193.7 272 39.7
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 3.1e-29 134.4 113 57.5
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 3.2e-26 124.4 77 77.9
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 5.5e-26 123.6 160 51.2
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 7.1e-26 123.2 224 46.0
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.7e-22 110.9 109 48.6
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 6.2e-22 110.2 391 26.1
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 4.5e-20 104.0 79 65.8
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 7.6e-20 103.2 78 71.8
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 2.2e-19 101.7 126 53.2
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 1.6e-14 85.5 468 22.6
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.1e-14 85.1 74 56.8
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.0e-12 78.6 61 57.4
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 3.8e-11 74.3 46 71.7


User provided reference genes

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