Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 2003.8 1034 100.0
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1962.6 1034 98.2
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1961.4 1034 98.1
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1944.9 1076 94.3
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1924.1 1075 93.0
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1840.1 1038 91.3
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1664.0 1045 83.2
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1647.9 1042 82.1
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1626.3 1061 80.8
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1592.4 1056 79.5
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1571.2 1043 79.1
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1569.3 1043 79.0
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1565.4 1054 78.8
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1561.2 1054 78.6
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1560.4 1052 77.8
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1557.3 1053 78.0
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1556.2 1046 77.8
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1555.8 1055 77.6
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1553.9 1047 78.0
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1552.0 1053 77.7
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1547.3 1067 76.8
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1546.2 1051 77.1
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1545.4 1059 77.0
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1544.3 1053 77.0
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1544.3 1067 76.7
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1542.7 1054 77.2
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1540.8 1025 78.3
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1540.8 1055 77.0
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1536.5 1047 76.9
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1536.5 1082 75.0
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1535.4 1059 77.1
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1534.6 1045 77.3
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1534.2 1060 76.2
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1532.7 1046 76.3
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1532.7 1048 76.6
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1531.9 1051 76.1
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1530.4 1064 75.3
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1530.4 1051 76.8
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1530.4 1023 78.2
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1530.0 1051 76.2
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1524.2 1050 75.3
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1523.5 1046 76.0
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1523.1 1059 75.8
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1517.7 1056 76.4
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1516.9 1049 75.9
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1515.7 1040 76.2
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1515.4 1047 75.1
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1515.0 1046 76.0
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1513.8 1025 77.3
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1513.0 1062 75.4
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1510.0 1051 75.1
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1508.0 1063 75.4
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1502.6 1053 75.0
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1502.3 1047 75.2
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1501.5 1049 75.3
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1501.1 1050 75.1
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1500.0 1053 75.0
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1497.6 1086 73.1
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1497.3 1055 75.0
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1496.5 1054 73.8
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1496.1 1053 73.7
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1496.1 1053 73.7
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1496.1 1058 75.0
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1494.2 1054 73.4
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1493.8 1061 74.4
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1493.4 1054 73.7
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1491.9 1053 74.4
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1490.3 1052 73.9
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1489.9 1054 74.2
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1489.2 1054 74.6
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1487.2 1041 74.5
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1486.9 1052 74.4
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1486.9 1052 73.7
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1484.2 1043 75.0
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1484.2 1075 73.5
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1481.8 1049 73.1
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1480.3 1052 73.5
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1476.8 1050 73.1
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1476.5 1040 74.1
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1476.1 1056 73.1
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1474.5 1054 73.1
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1474.5 1046 74.5
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1466.8 1057 73.3
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1465.3 1053 73.3
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1462.6 1058 72.2
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1461.8 1039 74.0
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1460.7 1058 72.1
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1458.7 1047 73.7
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1458.4 1057 73.6
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1458.4 1037 74.3
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1454.9 1031 73.4
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1441.0 1058 71.6
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1441.0 1064 71.9
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1430.2 1025 72.9
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1416.7 1042 70.7
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1412.5 1023 72.3
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1409.8 1044 70.2
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1405.2 1155 66.3
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1399.4 1010 73.1
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1392.1 1020 70.8
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1385.9 1058 70.4
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1364.0 1025 69.9
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1337.4 1051 69.8
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1323.1 1047 68.5
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1317.4 926 73.9
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1276.2 957 69.3
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1256.9 1050 65.7
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1249.6 1025 66.2
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1231.1 960 66.9
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1228.4 1034 64.5
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1220.7 1022 63.0
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1154.0 816 73.0
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1080.1 1007 60.0
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1078.5 1028 56.5
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 7.1e-312 1073.5 1018 57.7
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.9e-299 1032.7 757 72.7
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 2.8e-295 1018.8 1019 53.9
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.9e-287 992.3 959 58.5
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 4.9e-287 991.5 1028 53.1
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 1.9e-278 963.0 711 69.6
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 2.1e-277 959.5 611 83.3
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 2.7e-277 959.1 711 69.6
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 6.4e-263 911.4 1030 51.4
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 9.3e-254 880.9 1032 50.5
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 2.1e-253 879.8 1023 50.6
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 6.6e-252 874.8 622 72.8
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 5.8e-232 808.5 556 75.9
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 7.6e-232 808.1 484 85.7
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 2.3e-212 743.4 451 85.1
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 3.6e-197 693.0 1035 44.1
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 3.4e-195 686.4 442 79.6
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 1.3e-178 631.3 383 83.6
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 6.4e-178 629.0 1014 41.4
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.2e-176 624.8 486 69.3
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 6.6e-167 592.4 516 58.7
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.5e-166 591.3 404 74.8
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 6.4e-162 575.9 1064 36.5
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 7.6e-155 552.4 454 63.7
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 9.2e-153 545.4 556 56.1
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 8.4e-146 522.3 375 72.3
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.3e-145 518.8 369 72.6
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.3e-145 518.8 369 72.6
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.4e-140 505.0 418 62.7
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.6e-139 500.7 377 71.9
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 1.9e-134 484.6 322 75.2
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 2.9e-130 470.7 536 53.2
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 6.4e-130 469.5 654 43.3
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 2.3e-119 434.5 594 45.6
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 3.9e-119 433.7 1085 31.2
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 2.0e-107 394.8 281 72.2
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 1.6e-96 358.6 294 63.3
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.1e-88 330.1 508 42.5
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 6.5e-82 310.1 199 78.9
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 4.0e-79 300.8 522 36.4
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 5.4e-76 290.4 284 56.7
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 5.5e-73 280.4 399 44.4
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 9.2e-68 263.1 234 63.2
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 7.8e-67 260.0 291 50.9
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 7.8e-67 260.0 425 44.0
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.6e-62 245.0 225 63.1
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 4.1e-60 237.7 184 69.0
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 9.8e-54 216.5 140 78.6
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 4.7e-48 197.6 125 81.6
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 2.9e-45 188.3 172 62.2
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 4.1e-44 184.5 197 48.7
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 8.6e-42 176.8 128 70.3
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 1.5e-41 176.0 157 61.1
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 5.2e-39 167.5 138 62.3
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 1.7e-34 152.5 172 53.5
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 5.6e-33 147.5 253 40.7
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 7.6e-30 137.1 207 39.6
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 2.1e-24 119.0 263 35.4
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 2.8e-24 118.6 92 65.2
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.7e-19 102.1 96 60.4
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.3e-13 83.2 55 76.4
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 2.2e-13 82.4 83 54.2
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 2.4e-12 79.0 72 50.0
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 7.4e-09 67.4 69 46.4


User provided reference genes

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