Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.2e-98 363.2 184 100.0
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 5.7e-98 360.9 184 98.9
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 7.5e-98 360.5 184 98.9
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 2.2e-97 359.0 184 97.8
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 2.3e-94 349.0 177 99.4
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.3e-94 349.0 177 99.4
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 9.5e-93 343.6 184 92.4
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 2.8e-92 342.0 184 91.3
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 4.7e-92 341.3 184 91.3
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 2.7e-87 325.5 184 85.3
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 1.3e-86 323.2 184 87.0
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.3e-86 322.4 184 83.7
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 8.6e-86 320.5 184 83.7
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 8.6e-86 320.5 184 83.7
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 1.5e-85 319.7 184 84.8
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 1.5e-85 319.7 178 86.0
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.5e-85 318.9 184 83.2
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 2.5e-85 318.9 184 83.2
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 2.5e-85 318.9 184 85.9
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 3.3e-85 318.5 184 82.6
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 9.5e-85 317.0 184 83.7
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 1.2e-84 316.6 184 84.2
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 1.2e-84 316.6 184 84.8
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 1.2e-84 316.6 184 83.7
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 1.2e-84 316.6 184 83.7
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 1.6e-84 316.2 184 84.8
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 2.8e-84 315.5 184 81.0
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 8.0e-84 313.9 184 83.7
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 8.0e-84 313.9 184 83.7
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 8.0e-84 313.9 184 81.5
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 1.1e-83 313.5 184 81.5
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 1.1e-83 313.5 184 82.1
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.4e-83 313.2 184 81.0
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 1.8e-83 312.8 182 83.5
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 2.3e-83 312.4 184 81.0
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 2.3e-83 312.4 184 81.0
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.0e-83 311.6 184 79.9
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 4.0e-83 311.6 184 79.9
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 5.2e-83 311.2 184 79.9
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 6.8e-83 310.8 184 79.3
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 1.5e-82 309.7 184 80.4
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 2.6e-82 308.9 184 82.1
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 2.6e-82 308.9 185 82.2
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 4.4e-82 308.1 184 80.4
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 4.4e-82 308.1 183 79.8
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 5.8e-82 307.8 181 81.2
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 7.5e-82 307.4 182 81.3
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 1.7e-81 306.2 184 81.5
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.7e-81 306.2 184 79.9
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 2.9e-81 305.4 180 80.6
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 4.9e-81 304.7 181 80.7
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.4e-80 303.1 182 78.0
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 1.4e-80 303.1 182 78.0
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.9e-80 302.8 182 78.0
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.9e-80 302.8 184 79.3
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 1.9e-80 302.8 184 79.9
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 4.1e-80 301.6 184 77.7
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 4.1e-80 301.6 182 79.7
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 4.1e-80 301.6 184 79.3
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 2.1e-79 299.3 177 80.8
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 2.7e-79 298.9 184 77.2
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 3.5e-79 298.5 184 78.3
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 4.6e-79 298.1 182 78.0
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 7.8e-79 297.4 181 77.3
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 1.7e-78 296.2 182 78.6
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.7e-78 296.2 184 78.3
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 3.0e-78 295.4 182 77.5
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 3.9e-78 295.0 184 77.2
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 3.9e-78 295.0 184 73.9
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 5.1e-78 294.7 177 77.4
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 5.1e-78 294.7 184 75.5
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 6.6e-78 294.3 182 78.0
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 8.6e-78 293.9 182 78.6
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 8.6e-78 293.9 182 77.5
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.1e-77 293.5 184 77.2
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 1.1e-77 293.5 182 78.0
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 1.5e-77 293.1 184 76.1
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 3.3e-77 292.0 185 77.8
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 4.3e-77 291.6 178 77.0
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 7.3e-77 290.8 182 76.9
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.2e-76 290.0 184 75.0
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 1.6e-76 289.7 184 73.9
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 2.1e-76 289.3 183 77.6
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 2.8e-76 288.9 182 76.4
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 3.6e-76 288.5 184 74.5
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 3.6e-76 288.5 178 78.7
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 4.7e-76 288.1 184 75.0
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.4e-75 286.6 184 75.0
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 1.4e-75 286.6 182 72.5
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.8e-75 286.2 183 76.0
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 3.1e-75 285.4 184 74.5
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 4.0e-75 285.0 182 75.3
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 4.0e-75 285.0 182 75.3
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 4.0e-75 285.0 182 75.3
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 4.0e-75 285.0 184 74.5
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 4.0e-75 285.0 185 74.6
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 5.2e-75 284.6 177 76.3
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 8.9e-75 283.9 178 75.8
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 7.6e-74 280.8 182 74.2
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 7.6e-74 280.8 182 74.2
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 1.7e-73 279.6 193 73.6
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 2.2e-73 279.3 184 72.3
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 2.2e-73 279.3 178 74.2
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 3.7e-73 278.5 180 73.9
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 6.4e-73 277.7 178 75.3
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 1.4e-72 276.6 185 74.6
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 1.4e-72 276.6 185 70.3
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.9e-72 276.2 185 70.3
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 3.2e-72 275.4 184 71.7
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 3.2e-72 275.4 178 74.2
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 4.1e-72 275.0 179 72.6
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 1.2e-71 273.5 187 70.6
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 1.2e-71 273.5 185 69.7
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.6e-71 273.1 182 70.9
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 6.0e-71 271.2 177 76.3
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 7.8e-71 270.8 182 70.3
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 7.8e-71 270.8 170 77.1
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 1.3e-70 270.0 182 71.4
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 2.3e-70 269.2 177 70.6
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 2.3e-70 269.2 185 68.6
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.5e-69 266.5 184 68.5
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 1.4e-67 260.0 179 69.3
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 9.9e-66 253.8 184 68.5
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 1.7e-65 253.1 180 68.3
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 6.4e-65 251.1 177 68.4
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 8.4e-65 250.8 178 68.0
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 2.1e-63 246.1 178 66.3
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 1.3e-62 243.4 186 61.3
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 1.1e-61 240.4 165 75.2
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 2.5e-61 239.2 179 67.0
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 1.4e-56 223.4 179 62.0
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 1.9e-56 223.0 182 63.2
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 7.1e-56 221.1 115 94.8
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 7.9e-55 217.6 180 61.1
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 9.9e-50 200.7 184 57.6
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 9.3e-48 194.1 121 74.4
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 2.5e-45 186.0 197 51.8
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 8.4e-41 171.0 179 45.8
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 3.5e-39 165.6 159 52.8
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.6e-28 130.2 109 62.4
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 4.8e-28 128.6 99 65.7
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 6.5e-25 118.2 76 75.0
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 1.9e-16 90.1 164 32.9
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 4.7e-15 85.5 57 75.4
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 1.7e-12 77.0 59 62.7
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 2.8e-12 76.3 55 65.5
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 1.7e-09 67.0 41 80.5


User provided reference genes

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