Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.5e-153 544.3 278 100.0
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.9e-133 478.0 285 89.5
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.9e-130 468.4 292 87.0
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.2e-120 436.8 372 66.9
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 6.2e-120 434.5 371 66.8
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 6.2e-120 434.5 372 66.1
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.9e-116 422.9 371 65.8
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 3.0e-114 415.6 322 71.4
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 5.8e-102 374.8 370 58.6
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.5e-94 350.1 340 63.5
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 1.1e-92 344.0 369 54.5
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 2.4e-92 342.8 371 52.6
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 3.0e-90 335.9 371 52.6
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 1.1e-89 334.0 371 52.6
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 9.0e-87 324.3 371 50.7
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 9.0e-87 324.3 371 51.5
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 4.5e-86 322.0 371 50.7
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 1.3e-85 320.5 371 50.1
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 2.4e-79 299.7 288 58.0
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 2.4e-79 299.7 377 49.6
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 3.8e-77 292.4 346 48.3
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 6.5e-77 291.6 377 46.4
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.4e-76 290.4 377 46.7
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 3.2e-76 289.3 372 46.0
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 2.1e-75 286.6 382 46.3
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 3.5e-75 285.8 378 46.0
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 7.9e-75 284.6 377 48.3
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.5e-73 280.4 239 62.3
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 1.9e-73 280.0 372 45.2
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 3.3e-73 279.3 379 46.7
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 5.7e-73 278.5 377 46.2
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 7.4e-73 278.1 372 45.2
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 1.6e-72 276.9 374 45.2
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 3.7e-72 275.8 377 46.7
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 3.7e-72 275.8 377 46.2
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 8.2e-72 274.6 371 43.4
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 1.1e-71 274.2 377 45.9
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 4.1e-71 272.3 374 44.9
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 2.0e-70 270.0 395 43.8
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 7.7e-70 268.1 401 42.1
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 9.4e-68 261.2 379 44.3
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 9.4e-68 261.2 379 43.5
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 7.9e-67 258.1 362 42.5
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 1.5e-65 253.8 376 43.6
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 2.0e-65 253.4 358 42.7
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 2.0e-65 253.4 374 42.8
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 2.5e-65 253.1 377 44.3
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 2.5e-65 253.1 377 42.4
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 3.3e-65 252.7 376 42.3
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 3.3e-65 252.7 376 42.6
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 3.3e-65 252.7 376 42.6
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 3.3e-65 252.7 376 42.6
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 4.3e-65 252.3 377 43.5
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 4.3e-65 252.3 209 67.5
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 4.3e-65 252.3 348 46.6
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 4.3e-65 252.3 377 42.4
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 7.4e-65 251.5 368 43.2
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 9.7e-65 251.1 376 42.3
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 9.7e-65 251.1 376 42.3
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 1.7e-64 250.4 378 42.6
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 3.7e-64 249.2 376 42.0
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 3.7e-64 249.2 455 39.1
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 4.8e-64 248.8 358 43.0
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 1.1e-63 247.7 454 39.0
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 2.4e-63 246.5 340 46.2
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 2.4e-63 246.5 395 41.5
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 3.1e-63 246.1 377 43.2
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 4.1e-63 245.7 376 41.5
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 4.1e-63 245.7 376 41.2
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 6.9e-63 245.0 376 41.2
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 1.5e-62 243.8 376 41.2
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 1.5e-62 243.8 323 46.4
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 2.0e-62 243.4 376 41.5
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 2.6e-62 243.0 377 40.3
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 2.6e-62 243.0 377 41.9
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 3.4e-62 242.7 358 44.4
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 3.4e-62 242.7 377 42.4
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 3.4e-62 242.7 377 41.9
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 3.4e-62 242.7 376 41.8
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 4.5e-62 242.3 377 41.4
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 4.5e-62 242.3 372 41.1
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 1.0e-61 241.1 376 41.5
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 1.7e-61 240.4 374 40.6
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.7e-61 240.4 376 41.0
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 2.2e-61 240.0 377 41.4
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 3.8e-61 239.2 377 41.9
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 5.0e-61 238.8 376 41.5
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 5.0e-61 238.8 333 45.9
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 8.5e-61 238.0 366 41.3
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 1.4e-60 237.3 326 44.5
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 1.4e-60 237.3 377 41.6
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 5.5e-60 235.3 339 43.7
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 9.4e-60 234.6 356 43.8
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 1.2e-59 234.2 374 40.4
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 2.1e-59 233.4 376 42.0
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 2.1e-59 233.4 377 41.4
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 2.7e-59 233.0 366 42.3
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 3.6e-59 232.6 372 40.1
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 7.9e-59 231.5 327 43.1
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 7.9e-59 231.5 327 42.5
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 1.4e-58 230.7 378 39.7
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 4.4e-57 225.7 385 41.6
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 2.2e-56 223.4 383 41.3
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 4.8e-56 222.2 350 41.1
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 2.6e-54 216.5 454 36.3
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 5.9e-54 215.3 287 46.3
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 7.7e-54 214.9 402 38.6
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 1.3e-53 214.2 376 37.5
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 7.2e-52 208.4 377 38.2
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 4.7e-51 205.7 375 37.9
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 3.9e-50 202.6 279 49.1
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 2.8e-48 196.4 376 38.6
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 1.2e-46 191.0 138 75.4
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 5.0e-45 185.7 287 42.2
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 7.2e-44 181.8 349 37.5
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.6e-43 180.6 251 44.6
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.4e-42 177.6 272 43.8
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 8.8e-42 174.9 272 40.1
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 9.7e-41 171.4 312 37.8
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 3.7e-40 169.5 225 47.6
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 1.1e-39 167.9 274 44.2
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 1.1e-39 167.9 314 38.5
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 2.9e-37 159.8 169 54.4
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 5.0e-37 159.1 188 50.0
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 2.7e-35 153.3 210 46.2
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 3.6e-35 152.9 347 34.9
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 1.0e-34 151.4 378 32.0
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 5.2e-34 149.1 309 35.6
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 1.2e-33 147.9 168 51.8
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 4.4e-33 146.0 290 40.3
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 1.1e-31 141.4 327 30.9
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.2e-30 137.9 276 39.1
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 2.7e-30 136.7 188 45.7
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 1.0e-29 134.8 373 32.4
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 9.5e-28 128.3 167 48.5
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 1.2e-27 127.9 322 32.6
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 3.4e-25 119.8 126 54.8
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 5.7e-25 119.0 162 42.6
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.3e-24 117.9 158 46.2
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 1.1e-23 114.8 182 41.2
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.4e-23 114.4 162 43.2
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 2.0e-22 110.5 172 41.9
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 2.3e-18 97.1 370 26.8
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 1.1e-15 88.2 198 36.9
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.5e-12 77.0 64 60.9
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 2.5e-12 77.0 92 47.8
FAN05G5087 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.2e-10 69.3 34 94.1
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-09 67.8 144 31.9
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 9.8e-09 65.1 203 29.1
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 6.4e-08 62.4 126 34.1
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 1.4e-07 61.2 124 37.1


User provided reference genes

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