Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G1534 Fragaria x ananassa HOM05D002292 ORTHO05D012672 2.8e-32 141.4 72 100.0
RcHm_v2.0_Chr2g0127201 Rosa chinensis HOM05D002292 ORTHO05D003256 3.3e-17 91.3 94 58.5
FvH4_6g26640 Fragaria vesca HOM05D002292 ORTHO05D003256 5.7e-17 90.5 96 57.3
FAN14G5439 Fragaria x ananassa HOM05D002292 ORTHO05D003256 5.7e-17 90.5 96 57.3
Cpa.g.c26338 Carica papaya HOM05D002292 ORTHO05D003256 7.4e-17 90.1 94 57.4
FAN02G3233 Fragaria x ananassa HOM05D002292 ORTHO05D003256 1.6e-16 89.0 96 56.2
Lalb_Chr01g0005091 Lupinus albus HOM05D002292 ORTHO05D003256 1.6e-16 89.0 94 57.4
Cfa023332 Carpinus fangiana HOM05D002292 ORTHO05D003256 2.2e-16 88.6 94 56.4
FAN05G4358 Fragaria x ananassa HOM05D002292 ORTHO05D003256 2.2e-16 88.6 96 56.2
FAN09G0797 Fragaria x ananassa HOM05D002292 ORTHO05D003256 2.2e-16 88.6 96 56.2
Glyma.12G117600 Glycine max HOM05D002292 ORTHO05D003256 2.2e-16 88.6 94 56.4
Lj3g0005030 Lotus japonicus HOM05D002292 ORTHO05D003256 2.2e-16 88.6 94 56.4
MD09G1242100 Malus domestica HOM05D002292 ORTHO05D003256 2.2e-16 88.6 94 56.4
Medtr4g078780 Medicago truncatula HOM05D002292 ORTHO05D003256 2.2e-16 88.6 94 56.4
Phvul.L001621 Phaseolus vulgaris HOM05D002292 ORTHO05D003256 2.2e-16 88.6 94 56.4
Psat7g137480 Pisum sativum HOM05D002292 ORTHO05D003256 2.2e-16 88.6 94 56.4
TPR.G9354 Trifolium pratense HOM05D002292 ORTHO05D003256 2.2e-16 88.6 94 56.4
VMungo1127G1900 Vigna mungo HOM05D002292 ORTHO05D003256 2.2e-16 88.6 94 56.4
Ciclev10014210m.g Citrus clementina HOM05D002292 ORTHO05D003256 3.7e-16 87.8 94 55.3
Ca_18922_v3 Cicer arietinum L. HOM05D002292 ORTHO05D003256 4.8e-16 87.4 94 55.3
Prupe.3G134800 Prunus persica HOM05D002292 ORTHO05D003256 4.8e-16 87.4 94 55.3
CiPaw.04G128800 Carya illinoinensis HOM05D002292 ORTHO05D003256 6.3e-16 87.0 94 55.3
COL.COLO4_18044 Corchorus olitorius HOM05D002292 ORTHO05D003256 6.3e-16 87.0 94 55.3
Glyma.06G289400 Glycine max HOM05D002292 ORTHO05D003256 6.3e-16 87.0 94 55.3
Gohir.A01G019500 Gossypium hirsutum HOM05D002292 ORTHO05D003256 6.3e-16 87.0 94 55.3
Gohir.D01G018000 Gossypium hirsutum HOM05D002292 ORTHO05D003256 6.3e-16 87.0 94 55.3
Gorai.002G020200 Gossypium raimondii HOM05D002292 ORTHO05D003256 6.3e-16 87.0 94 55.3
Nn1g00672 Nelumbo nucifera HOM05D002292 ORTHO05D003256 6.3e-16 87.0 94 55.3
Potri.007G137200 Populus trichocarpa HOM05D002292 ORTHO05D003256 6.3e-16 87.0 94 55.3
Sed0000760 Sechium edule HOM05D002292 ORTHO05D003256 6.3e-16 87.0 94 55.3
Sed0014471 Sechium edule HOM05D002292 ORTHO05D003256 6.3e-16 87.0 94 55.3
TWI14G1271 Tripterygium wilfordii HOM05D002292 ORTHO05D003256 6.3e-16 87.0 94 55.3
CiPaw.03G181100 Carya illinoinensis HOM05D002292 ORTHO05D003256 8.2e-16 86.7 94 55.3
Duzib248G0284 Durio zibethinus HOM05D002292 ORTHO05D003256 8.2e-16 86.7 94 55.3
Lalb_Chr03g0029631 Lupinus albus HOM05D002292 ORTHO05D003256 8.2e-16 86.7 94 56.4
Lalb_Chr19g0135111 Lupinus albus HOM05D002292 ORTHO05D003256 8.2e-16 86.7 94 56.4
Manes.12G089500 Manihot esculenta HOM05D002292 ORTHO05D003256 8.2e-16 86.7 94 55.3
MELO3C018868.2 Cucumis melo HOM05D002292 ORTHO05D003256 1.1e-15 86.3 94 54.3
CsaV3_7G003090 Cucumis sativus L. HOM05D002292 ORTHO05D003256 1.1e-15 86.3 94 54.3
PGR142G0833 Punica granatum HOM05D002292 ORTHO05D003256 1.1e-15 86.3 94 54.3
ATR0691G112 Amborella trichopoda HOM05D002292 ORTHO05D003256 1.4e-15 85.9 94 54.3
Eucgr.K01053 Eucalyptus grandis HOM05D002292 ORTHO05D003256 1.4e-15 85.9 94 54.3
MD17G1234500 Malus domestica HOM05D002292 ORTHO05D003256 1.4e-15 85.9 94 54.3
Nn6g33691 Nelumbo nucifera HOM05D002292 ORTHO05D003256 1.4e-15 85.9 95 53.7
Thecc.02G185600 Theobroma cacao HOM05D002292 ORTHO05D003256 1.4e-15 85.9 94 55.3
TAR369G0508 Trochodendron aralioides HOM05D002292 ORTHO05D003256 1.4e-15 85.9 95 53.7
TAR369G0796 Trochodendron aralioides HOM05D002292 ORTHO05D003256 1.4e-15 85.9 95 53.7
Cc05_g07700 Coffea canephora HOM05D002292 ORTHO05D003256 1.8e-15 85.5 94 55.3
Dinv01517 Davidia involucrata HOM05D002292 ORTHO05D003256 1.8e-15 85.5 94 55.3
Dinv10166 Davidia involucrata HOM05D002292 ORTHO05D003256 1.8e-15 85.5 94 55.3
Sabra17G0012000 Salix brachista HOM05D002292 ORTHO05D003256 1.8e-15 85.5 98 53.1
Potri.017G014800 Populus trichocarpa HOM05D002292 ORTHO05D003256 2.4e-15 85.1 94 54.3
GSVIVG01020602001 Vitis vinifera HOM05D002292 ORTHO05D003256 3.1e-15 84.7 94 54.3
Aqoxy3G02563 Aquilegia oxysepala HOM05D002292 ORTHO05D003256 4.1e-15 84.3 93 54.8
EL10Ac9g20812 Beta vulgaris HOM05D002292 ORTHO05D003256 5.3e-15 84.0 94 53.2
CANSAT64G2461 Cannabis sativa HOM05D002292 ORTHO05D003256 5.3e-15 84.0 94 53.2
AUR62036052 Chenopodium quinoa HOM05D002292 ORTHO05D003256 5.3e-15 84.0 94 53.2
AUR62038984 Chenopodium quinoa HOM05D002292 ORTHO05D003256 5.3e-15 84.0 94 53.2
ECA246G1445 Erigeron canadensis HOM05D002292 ORTHO05D003256 5.3e-15 84.0 94 54.3
Migut.M00151 Erythranthe guttata HOM05D002292 ORTHO05D003256 5.3e-15 84.0 94 54.3
QL08p040049 Quercus lobata HOM05D002292 ORTHO05D003256 6.9e-15 83.6 94 54.3
SEGI_41616 Sequoiadendron giganteum HOM05D002292 ORTHO05D003256 6.9e-15 83.6 94 54.3
Zm00001eb232220 Zea mays HOM05D002292 ORTHO05D003256 6.9e-15 83.6 92 53.3
Lsat_1_v5_gn_6_65161 Lactuca sativa HOM05D002292 ORTHO05D003256 9.0e-15 83.2 94 54.3
Os02g0146700 Oryza sativa ssp. japonica HOM05D002292 ORTHO05D003256 9.0e-15 83.2 94 52.1
PSO339G0848 Papaver somniferum HOM05D002292 ORTHO05D003256 9.0e-15 83.2 95 52.6
PSO384G0954 Papaver somniferum HOM05D002292 ORTHO05D003256 9.0e-15 83.2 95 52.6
QL08p040017 Quercus lobata HOM05D002292 ORTHO05D003256 9.0e-15 83.2 94 53.2
Sc21g0003680 Simmondsia chinensis HOM05D002292 ORTHO05D003256 9.0e-15 83.2 94 53.2
ECA232G1044 Erigeron canadensis HOM05D002292 ORTHO05D003256 1.2e-14 82.8 94 53.2
Os09g0326800 Oryza sativa ssp. japonica HOM05D002292 ORTHO05D003256 1.2e-14 82.8 94 51.1
PSO210G1937 Papaver somniferum HOM05D002292 ORTHO05D003256 1.2e-14 82.8 95 51.6
HPP92_006722 Vanilla planifolia HOM05D002292 ORTHO05D003256 1.2e-14 82.8 94 52.1
Zm00001eb208050 Zea mays HOM05D002292 ORTHO05D003256 1.2e-14 82.8 94 52.1
MSTRG.15130 Avicennia marina HOM05D002292 ORTHO05D003256 1.5e-14 82.4 94 53.2
CSS0001743 Camellia sinensis var. sinensis HOM05D002292 ORTHO05D003256 1.5e-14 82.4 94 53.2
Duzib052G0792 Durio zibethinus HOM05D002292 ORTHO05D003256 1.5e-14 82.4 94 52.1
Os06g0699900 Oryza sativa ssp. japonica HOM05D002292 ORTHO05D003256 1.5e-14 82.4 94 51.1
SGA_v2.0_scaffold34G13924 Striga asiatica HOM05D002292 ORTHO05D003256 1.5e-14 82.4 94 53.2
PSO210G2625 Papaver somniferum HOM05D002292 ORTHO05D003256 2.0e-14 82.0 95 51.6
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 2.0e-14 82.0 94 56.4
arahy.Tifrunner.gnm1.ann1.ULM3VA Arachis hypogaea HOM05D002292 ORTHO05D003256 2.6e-14 81.6 112 47.3
arahy.Tifrunner.gnm1.ann1.WEN01S Arachis hypogaea HOM05D002292 ORTHO05D003256 2.6e-14 81.6 112 47.3
CAN.G209.5 Capsicum annuum HOM05D002292 ORTHO05D003256 2.6e-14 81.6 94 53.2
HanXRQChr17g0541921 Helianthus annuus HOM05D002292 ORTHO05D003256 2.6e-14 81.6 94 52.1
Lj8C108T4 Lonicera japonica HOM05D002292 ORTHO05D003256 2.6e-14 81.6 94 53.2
Hund01060 Selenicereus undatus HOM05D002292 ORTHO05D003256 3.4e-14 81.3 94 54.3
AL3G53630 Arabidopsis lyrata HOM05D002292 ORTHO05D003256 4.5e-14 80.9 94 52.1
THA.LOC104804050 Tarenaya hassleriana HOM05D002292 ORTHO05D003256 4.5e-14 80.9 94 51.1
HanXRQChr11g0326301 Helianthus annuus HOM05D002292 ORTHO05D003256 5.9e-14 80.5 94 51.1
Rhsim06G0137300 Rhododendron simsii HOM05D002292 ORTHO05D003256 5.9e-14 80.5 94 52.1
Atru.chr6.2873 Acer truncatum HOM05D002292 ORTHO05D003256 7.7e-14 80.1 74 62.2
Aqoxy4G01267 Aquilegia oxysepala HOM05D002292 ORTHO05D003256 7.7e-14 80.1 94 51.1
AT2G20580 Arabidopsis thaliana HOM05D002292 ORTHO05D003256 7.7e-14 80.1 94 51.1
Psat4g001960 Pisum sativum HOM05D002292 ORTHO05D003256 7.7e-14 80.1 93 51.6
Aa31LG2G21960 Aethionema arabicum HOM05D002292 ORTHO05D003256 1.0e-13 79.7 94 52.1
Aa31LG8G13530 Aethionema arabicum HOM05D002292 ORTHO05D003256 1.0e-13 79.7 94 51.1
BcaB03g16854 Brassica carinata HOM05D002292 ORTHO05D003256 1.0e-13 79.7 94 51.1
Oeu036078.1 Olea europaea HOM05D002292 ORTHO05D003256 1.0e-13 79.7 91 51.6
Sp3g33820 Schrenkiella parvula HOM05D002292 ORTHO05D003256 1.0e-13 79.7 94 51.1
Solyc07g053650.4 Solanum lycopersicum HOM05D002292 ORTHO05D003256 1.0e-13 79.7 94 51.1
Sopen07g027620 Solanum pennellii HOM05D002292 ORTHO05D003256 1.0e-13 79.7 94 51.1
PGSC0003DMG402009395 Solanum tuberosum HOM05D002292 ORTHO05D003256 1.0e-13 79.7 94 51.1
FAN24G0038 Fragaria x ananassa HOM05D002292 ORTHO05D012672 1.3e-13 79.3 65 69.2
SGA_v2.0_scaffold70G23495 Striga asiatica HOM05D002292 ORTHO05D003256 1.3e-13 79.3 104 50.0
Carub.0003s3506 Capsella rubella HOM05D002292 ORTHO05D003256 1.7e-13 79.0 94 51.1
CARHR111150 Cardamine hirsuta HOM05D002292 ORTHO05D003256 1.7e-13 79.0 94 51.1
Thhalv10001903m.g Eutrema salsugineum HOM05D002292 ORTHO05D003256 2.2e-13 78.6 94 50.0
Manes.13G142400 Manihot esculenta HOM05D002292 ORTHO05D003256 2.2e-13 78.6 95 50.5
Sabra07G0110300 Salix brachista HOM05D002292 ORTHO05D003256 2.9e-13 78.2 105 46.7
TPR.G5998 Trifolium pratense HOM05D002292 ORTHO05D003256 2.9e-13 78.2 94 48.9
PSO013G0195 Papaver somniferum HOM05D002292 ORTHO05D003256 3.8e-13 77.8 103 45.6
TWI23G0418 Tripterygium wilfordii HOM05D002292 ORTHO05D003256 3.8e-13 77.8 90 54.4
Oeu016909.1 Olea europaea HOM05D002292 ORTHO05D003256 6.5e-13 77.0 94 51.1
BcaC06g36750 Brassica carinata HOM05D002292 ORTHO05D003256 2.5e-12 75.1 94 48.9
C07p00430 Brassica napus HOM05D002292 ORTHO05D003256 2.5e-12 75.1 94 48.9
BolC7t40489H Brassica oleracea HOM05D002292 ORTHO05D003256 2.5e-12 75.1 94 48.9
SMO147G0251 Selaginella moellendorffii HOM05D002292 ORTHO05D003256 3.2e-12 74.7 94 48.9
Actinidia39328 Actinidia chinensis HOM05D002292 ORTHO05D003256 4.2e-12 74.3 95 48.4
AL7G24090 Arabidopsis lyrata HOM05D002292 ORTHO05D003256 7.2e-12 73.6 94 48.9
Carub.0007s1223 Capsella rubella HOM05D002292 ORTHO05D003256 9.4e-12 73.2 94 47.9
Thhalv10024363m.g Eutrema salsugineum HOM05D002292 ORTHO05D003256 9.4e-12 73.2 94 48.9
AT4G28470 Arabidopsis thaliana HOM05D002292 ORTHO05D003256 1.6e-11 72.4 94 48.9
A07p00160 Brassica napus HOM05D002292 ORTHO05D003256 1.6e-11 72.4 94 47.9
BcaC09g51648 Brassica carinata HOM05D002292 ORTHO05D003256 2.1e-11 72.0 94 48.9
BcaNung01564 Brassica carinata HOM05D002292 ORTHO05D003256 2.1e-11 72.0 94 48.9
A01p09480 Brassica napus HOM05D002292 ORTHO05D003256 2.1e-11 72.0 94 48.9
C01p11030 Brassica napus HOM05D002292 ORTHO05D003256 2.1e-11 72.0 94 48.9
BolC1t01065H Brassica oleracea HOM05D002292 ORTHO05D003256 2.1e-11 72.0 94 48.9
BraA01t00890Z Brassica rapa HOM05D002292 ORTHO05D003256 2.1e-11 72.0 94 48.9
BcaC06g32618 Brassica carinata HOM05D002292 ORTHO05D003256 2.7e-11 71.6 94 47.9
A03p58120 Brassica napus HOM05D002292 ORTHO05D003256 2.7e-11 71.6 94 47.9
C07p56240 Brassica napus HOM05D002292 ORTHO05D003256 2.7e-11 71.6 94 47.9
BolC7t46102H Brassica oleracea HOM05D002292 ORTHO05D003256 2.7e-11 71.6 94 47.9
BraA03t14878Z Brassica rapa HOM05D002292 ORTHO05D003256 2.7e-11 71.6 94 47.9
CSS0036482 Camellia sinensis var. sinensis HOM05D002292 ORTHO05D003256 2.7e-11 71.6 93 49.5
CARHR236240 Cardamine hirsuta HOM05D002292 ORTHO05D003256 3.6e-11 71.2 94 47.9
Sp7g26440 Schrenkiella parvula HOM05D002292 ORTHO05D003256 3.6e-11 71.2 94 48.9
BcaC07g38333 Brassica carinata HOM05D002292 ORTHO05D003256 6.1e-11 70.5 94 48.9
A08p20050 Brassica napus HOM05D002292 ORTHO05D003256 6.1e-11 70.5 94 48.9
C08p10870 Brassica napus HOM05D002292 ORTHO05D003256 6.1e-11 70.5 94 48.9
BolC8t48762H Brassica oleracea HOM05D002292 ORTHO05D003256 6.1e-11 70.5 94 48.9
BraA08t33964Z Brassica rapa HOM05D002292 ORTHO05D003256 6.1e-11 70.5 94 48.9
CSS0019547 Camellia sinensis var. sinensis HOM05D002292 ORTHO05D003256 6.1e-11 70.5 93 49.5
PSO349G0008 Papaver somniferum HOM05D002292 ORTHO05D003256 6.1e-11 70.5 96 45.8
TAR636G1561 Trochodendron aralioides HOM05D002292 ORTHO05D003256 6.1e-11 70.5 95 47.4
Mapoly0136s0010 Marchantia polymorpha HOM05D002292 ORTHO05D003256 7.9e-11 70.1 94 46.8
AagrBONN_evm.TU.Sc2ySwM_228.5526 Anthoceros agrestis HOM05D002292 ORTHO05D003256 1.0e-10 69.7 94 44.7
BcaB03g12574 Brassica carinata HOM05D002292 ORTHO05D003256 1.0e-10 69.7 94 47.9
Gorai.004G198500 Gossypium raimondii HOM05D002292 ORTHO05D003256 1.0e-10 69.7 94 47.9
THA.LOC104824690 Tarenaya hassleriana HOM05D002292 ORTHO05D003256 1.4e-10 69.3 93 47.3
Gohir.D08G188500 Gossypium hirsutum HOM05D002292 ORTHO05D003256 1.8e-10 68.9 94 46.8
Lj2C804G14 Lonicera japonica HOM05D002292 ORTHO05D003256 2.3e-10 68.6 72 54.2
Pp3c18_12670 Physcomitrium patens HOM05D002292 ORTHO05D003256 2.3e-10 68.6 94 44.7
FvH4_2g12230 Fragaria vesca HOM05D002292 ORTHO05D003256 5.1e-10 67.4 68 60.3
Pp3c19_20260 Physcomitrium patens HOM05D002292 ORTHO05D003256 5.1e-10 67.4 94 42.6
Dinv06862 Davidia involucrata HOM05D002292 ORTHO05D003256 2.5e-09 65.1 106 44.3
Sopen10g004040 Solanum pennellii HOM05D002292 ORTHO05D003256 2.5e-09 65.1 95 42.1
CBR_g30307 Chara braunii HOM05D002292 ORTHO05D003256 2.2e-08 62.0 93 44.1
BraA07t27810Z Brassica rapa HOM05D002292 ORTHO05D003256 2.8e-08 61.6 80 47.5
TPR.G37007 Trifolium pratense HOM05D002292 ORTHO05D003256 2.8e-08 61.6 95 44.2
TPR.G37079 Trifolium pratense HOM05D002292 ORTHO05D003256 2.8e-08 61.6 95 44.2
PGSC0003DMG400021858 Solanum tuberosum HOM05D002292 ORTHO05D012147 3.7e-08 61.2 57 57.9
FAN22G0932 Fragaria x ananassa HOM05D002292 ORTHO05D003256 4.8e-08 60.8 96 44.8
FAN12G0742 Fragaria x ananassa HOM05D002292 ORTHO05D003256 1.1e-07 59.7 96 45.8
Actinidia11105 Actinidia chinensis HOM05D002292 ORTHO05D003256 1.8e-07 58.9 93 40.9
FvH4_4g14560 Fragaria vesca HOM05D002292 ORTHO05D003256 2.4e-07 58.5 96 44.8
SalBow7G4305 Salvia bowleyana HOM05D002292 ORTHO05D003256 1.2e-06 56.2 29 89.7
HPP92_006718 Vanilla planifolia HOM05D002292 ORTHO05D003256 1.5e-06 55.8 36 72.2
RcHm_v2.0_Chr4g0418261 Rosa chinensis HOM05D002292 ORTHO05D003256 5.9e-06 53.9 53 60.4


User provided reference genes

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