Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0839 Fragaria x ananassa HOM05D002263 ORTHO05D016312 3.8e-48 194.5 97 100.0
FAN05G1023 Fragaria x ananassa HOM05D002263 ORTHO05D016312 4.3e-36 154.5 85 88.2
FAN05G0547 Fragaria x ananassa HOM05D002263 ORTHO05D016312 5.6e-36 154.1 84 89.3
FAN13G3028 Fragaria x ananassa HOM05D002263 ORTHO05D016312 8.4e-32 140.2 86 81.4
FAN01G1372 Fragaria x ananassa HOM05D002263 ORTHO05D016312 7.9e-22 107.1 57 91.2
FAN21G0405 Fragaria x ananassa HOM05D002263 ORTHO05D016312 1.1e-20 103.2 57 89.5
FvH4_7g01280 Fragaria vesca HOM05D002263 ORTHO05D003537 1.9e-20 102.4 58 89.7
FAN01G0038 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.9e-20 102.4 58 89.7
FAN03G0380 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.9e-20 102.4 58 89.7
FAN06G0127 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.9e-20 102.4 58 89.7
FAN10G1377 Fragaria x ananassa HOM05D002263 ORTHO05D003537 1.9e-20 102.4 58 89.7
RcHm_v2.0_Chr1g0317031 Rosa chinensis HOM05D002263 ORTHO05D003537 4.0e-18 94.7 62 82.3
CANSAT80G1724 Cannabis sativa HOM05D002263 ORTHO05D003537 5.8e-17 90.9 58 81.0
BcaNung00438 Brassica carinata HOM05D002263 ORTHO05D003537 3.8e-16 88.2 52 78.8
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 1.9e-15 85.9 60 75.0
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 1.9e-15 85.9 60 75.0
Sopen01g034420 Solanum pennellii HOM05D002263 ORTHO05D003537 3.2e-15 85.1 57 73.7
CSS0021570 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 4.2e-15 84.7 55 76.4
CSS0033402 Camellia sinensis var. sinensis HOM05D002263 ORTHO05D003537 4.2e-15 84.7 55 76.4
GSVIVG01032138001 Vitis vinifera HOM05D002263 ORTHO05D003537 4.2e-15 84.7 56 76.8
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 5.5e-15 84.3 52 76.9
Ciclev10030505m.g Citrus clementina HOM05D002263 ORTHO05D003537 7.1e-15 84.0 59 74.6
Phvul.005G024200 Phaseolus vulgaris HOM05D002263 ORTHO05D003537 7.1e-15 84.0 53 79.2
QL04p008574 Quercus lobata HOM05D002263 ORTHO05D003537 7.1e-15 84.0 75 64.0
PGSC0003DMG400006793 Solanum tuberosum HOM05D002263 ORTHO05D003537 7.1e-15 84.0 57 71.9
VMungo1080G1747 Vigna mungo HOM05D002263 ORTHO05D003537 7.1e-15 84.0 53 79.2
BcaC09g51672 Brassica carinata HOM05D002263 ORTHO05D003537 9.3e-15 83.6 57 75.4
C01p10550 Brassica napus HOM05D002263 ORTHO05D003537 9.3e-15 83.6 57 75.4
BolC1t01018H Brassica oleracea HOM05D002263 ORTHO05D003537 9.3e-15 83.6 57 75.4
QL04p008074 Quercus lobata HOM05D002263 ORTHO05D003537 9.3e-15 83.6 75 64.0
Rhsim01G0127100 Rhododendron simsii HOM05D002263 ORTHO05D003537 9.3e-15 83.6 56 75.0
Rhsim01G0128300 Rhododendron simsii HOM05D002263 ORTHO05D003537 9.3e-15 83.6 56 75.0
THA.LOC104820131 Tarenaya hassleriana HOM05D002263 ORTHO05D003537 9.3e-15 83.6 53 79.2
Carub.0003s2419 Capsella rubella HOM05D002263 ORTHO05D003537 1.2e-14 83.2 56 76.8
CiPaw.05G149100 Carya illinoinensis HOM05D002263 ORTHO05D003537 1.2e-14 83.2 61 70.5
CiPaw.14G001600 Carya illinoinensis HOM05D002263 ORTHO05D003537 1.2e-14 83.2 61 70.5
Glyma.10G090000 Glycine max HOM05D002263 ORTHO05D003537 1.2e-14 83.2 54 77.8
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 1.2e-14 83.2 55 74.5
Psat7g085320 Pisum sativum HOM05D002263 ORTHO05D003537 1.2e-14 83.2 55 74.5
Prupe.2G017500 Prunus persica HOM05D002263 ORTHO05D003537 1.2e-14 83.2 59 71.2
Prupe.2G018500 Prunus persica HOM05D002263 ORTHO05D003537 1.2e-14 83.2 59 71.2
Solyc01g087500.3 Solanum lycopersicum HOM05D002263 ORTHO05D003537 1.2e-14 83.2 57 71.9
CAN.G219.44 Capsicum annuum HOM05D002263 ORTHO05D003537 1.6e-14 82.8 57 70.2
CARHR061100 Cardamine hirsuta HOM05D002263 ORTHO05D003537 1.6e-14 82.8 58 70.7
MELO3C023986.2 Cucumis melo HOM05D002263 ORTHO05D003537 1.6e-14 82.8 60 73.3
Nitab4.5_0000707g0240 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.6e-14 82.8 57 71.9
Nitab4.5_0002918g0080 Nicotiana tabacum HOM05D002263 ORTHO05D003537 1.6e-14 82.8 57 71.9
BraA01t00849Z Brassica rapa HOM05D002263 ORTHO05D003537 2.1e-14 82.4 57 73.7
Glyma.15G276000 Glycine max HOM05D002263 ORTHO05D003537 2.1e-14 82.4 54 75.9
SalBow5G1665 Salvia bowleyana HOM05D002263 ORTHO05D003537 2.1e-14 82.4 61 68.9
Aa31LG5G18570 Aethionema arabicum HOM05D002263 ORTHO05D003537 2.7e-14 82.0 55 76.4
arahy.Tifrunner.gnm1.ann1.VJ5EI6 Arachis hypogaea HOM05D002263 ORTHO05D003537 2.7e-14 82.0 60 68.3
A01p09010 Brassica napus HOM05D002263 ORTHO05D003537 2.7e-14 82.0 58 72.4
Ca_14467_v3 Cicer arietinum L. HOM05D002263 ORTHO05D003537 2.7e-14 82.0 55 72.7
CsaV3_3G032050 Cucumis sativus L. HOM05D002263 ORTHO05D003537 2.7e-14 82.0 60 73.3
Lj3g0016100 Lotus japonicus HOM05D002263 ORTHO05D003537 2.7e-14 82.0 57 70.2
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 2.7e-14 82.0 55 72.7
TPR.G22438 Trifolium pratense HOM05D002263 ORTHO05D003537 2.7e-14 82.0 55 72.7
TPR.G27843 Trifolium pratense HOM05D002263 ORTHO05D003537 2.7e-14 82.0 55 72.7
AL3G38880 Arabidopsis lyrata HOM05D002263 ORTHO05D003537 3.5e-14 81.6 57 73.7
arahy.Tifrunner.gnm1.ann1.NCP65V Arachis hypogaea HOM05D002263 ORTHO05D003537 3.5e-14 81.6 60 68.3
TWI09G0750 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 3.5e-14 81.6 54 75.9
TWI73G0071 Tripterygium wilfordii HOM05D002263 ORTHO05D003537 3.5e-14 81.6 54 75.9
TAR369G0754 Trochodendron aralioides HOM05D002263 ORTHO05D003537 3.5e-14 81.6 62 69.4
Thhalv10024219m.g Eutrema salsugineum HOM05D002263 ORTHO05D003537 4.6e-14 81.3 58 72.4
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 4.6e-14 81.3 57 70.2
MD07G1017700 Malus domestica HOM05D002263 ORTHO05D003537 4.6e-14 81.3 62 67.7
Zm00001eb188030 Zea mays HOM05D002263 ORTHO05D003537 6.0e-14 80.9 51 76.5
TAR623G1165 Trochodendron aralioides HOM05D002263 ORTHO05D003537 7.9e-14 80.5 62 67.7
FAN26G0899 Fragaria x ananassa HOM05D002263 ORTHO05D016312 1.0e-13 80.1 54 72.2
FAN26G1597 Fragaria x ananassa HOM05D002263 ORTHO05D016312 1.0e-13 80.1 54 72.2
Cc02_g28170 Coffea canephora HOM05D002263 ORTHO05D003537 1.3e-13 79.7 53 77.4
Gohir.A10G219600 Gossypium hirsutum HOM05D002263 ORTHO05D003537 1.3e-13 79.7 53 75.5
Gohir.D10G229100 Gossypium hirsutum HOM05D002263 ORTHO05D003537 1.3e-13 79.7 53 75.5
Gorai.011G261600 Gossypium raimondii HOM05D002263 ORTHO05D003537 1.3e-13 79.7 53 75.5
Sed0008745 Sechium edule HOM05D002263 ORTHO05D003537 1.3e-13 79.7 60 71.7
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 1.8e-13 79.3 60 70.0
ClCG10G012270 Citrullus lanatus HOM05D002263 ORTHO05D003537 1.8e-13 79.3 58 69.0
MD02G1308000 Malus domestica HOM05D002263 ORTHO05D003537 1.8e-13 79.3 63 68.3
Nn7g36258 Nelumbo nucifera HOM05D002263 ORTHO05D003537 1.8e-13 79.3 62 67.7
BcaNung01342 Brassica carinata HOM05D002263 ORTHO05D003537 2.3e-13 79.0 60 68.3
Thecc.10G041300 Theobroma cacao HOM05D002263 ORTHO05D003537 2.3e-13 79.0 53 75.5
vmacro14860 Vaccinium macrocarpon HOM05D002263 ORTHO05D003537 2.3e-13 79.0 63 65.1
Atru.chr11.2587 Acer truncatum HOM05D002263 ORTHO05D003537 3.0e-13 78.6 56 75.0
Sed0024297 Sechium edule HOM05D002263 ORTHO05D003537 3.0e-13 78.6 58 69.0
Hund15422 Selenicereus undatus HOM05D002263 ORTHO05D003537 3.0e-13 78.6 76 56.6
Zm00001eb251620 Zea mays HOM05D002263 ORTHO05D003537 3.0e-13 78.6 51 74.5
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 3.9e-13 78.2 67 59.7
Cfa010797 Carpinus fangiana HOM05D002263 ORTHO05D003537 5.1e-13 77.8 57 70.2
Haze_03174 Corylus avellana HOM05D002263 ORTHO05D003537 5.1e-13 77.8 57 70.2
Peaxi162Scf00744g00349 Petunia axillaris HOM05D002263 ORTHO05D003537 5.1e-13 77.8 57 64.9
Sp7g26900 Schrenkiella parvula HOM05D002263 ORTHO05D003537 5.1e-13 77.8 58 69.0
HPP92_014707 Vanilla planifolia HOM05D002263 ORTHO05D003537 5.1e-13 77.8 60 65.0
Actinidia31076 Actinidia chinensis HOM05D002263 ORTHO05D003537 6.7e-13 77.4 57 68.4
Lj9C634T13 Lonicera japonica HOM05D002263 ORTHO05D003537 6.7e-13 77.4 54 70.4
Duzib106G1002 Durio zibethinus HOM05D002263 ORTHO05D003537 8.7e-13 77.0 53 73.6
Hma1.2p1_2160F.1_g315570 Hydrangea macrophylla HOM05D002263 ORTHO05D003537 8.7e-13 77.0 54 72.2
Lsat_1_v5_gn_1_105720 Lactuca sativa HOM05D002263 ORTHO05D003537 8.7e-13 77.0 64 67.2
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 8.7e-13 77.0 56 69.6
unitig_8.g3777 Utricularia gibba HOM05D002263 ORTHO05D003537 8.7e-13 77.0 59 66.1
ATR0332G038 Amborella trichopoda HOM05D002263 ORTHO05D003537 1.1e-12 76.6 62 61.3
Nn2g15271 Nelumbo nucifera HOM05D002263 ORTHO05D003537 1.1e-12 76.6 57 68.4
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.5e-12 76.3 67 58.2
ECA248G0809 Erigeron canadensis HOM05D002263 ORTHO05D003537 1.5e-12 76.3 53 67.9
Oeu049493.1 Olea europaea HOM05D002263 ORTHO05D003537 1.5e-12 76.3 63 63.5
AagrBONN_evm.TU.Sc2ySwM_344.3755 Anthoceros agrestis HOM05D002263 ORTHO05D003537 1.9e-12 75.9 62 64.5
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 1.9e-12 75.9 60 65.0
Dinv43424 Davidia involucrata HOM05D002263 ORTHO05D003537 1.9e-12 75.9 65 63.1
PGR031G1196 Punica granatum HOM05D002263 ORTHO05D003537 1.9e-12 75.9 57 66.7
Sed0003769 Sechium edule HOM05D002263 ORTHO05D003537 1.9e-12 75.9 56 64.3
Eucgr.H02748 Eucalyptus grandis HOM05D002263 ORTHO05D003537 3.3e-12 75.1 58 65.5
FAN09G4539 Fragaria x ananassa HOM05D002263 ORTHO05D016312 3.3e-12 75.1 57 70.2
PSO063G6561 Papaver somniferum HOM05D002263 ORTHO05D003537 3.3e-12 75.1 64 62.5
PSO832G4242 Papaver somniferum HOM05D002263 ORTHO05D003537 3.3e-12 75.1 64 62.5
Aqoxy2G00154 Aquilegia oxysepala HOM05D002263 ORTHO05D003537 5.7e-12 74.3 51 72.5
COL.COLO4_15050 Corchorus olitorius HOM05D002263 ORTHO05D003537 5.7e-12 74.3 51 74.5
CDE10G0015 Ceratophyllum demersum HOM05D002263 ORTHO05D003537 7.4e-12 73.9 61 60.7
Eucgr.H02633 Eucalyptus grandis HOM05D002263 ORTHO05D003537 7.4e-12 73.9 61 62.3
MSTRG.20571 Avicennia marina HOM05D002263 ORTHO05D003537 9.7e-12 73.6 62 64.5
MBI02_g23141_MAGBIO Magnolia biondii HOM05D002263 ORTHO05D003537 9.7e-12 73.6 63 63.5
Pp3c19_3610 Physcomitrium patens HOM05D002263 ORTHO05D003537 1.3e-11 73.2 69 56.5
Ah.10g038760 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.6e-11 72.8 69 52.2
Potri.001G264000 Populus trichocarpa HOM05D002263 ORTHO05D003537 1.6e-11 72.8 54 68.5
unitig_22.g5326 Utricularia gibba HOM05D002263 ORTHO05D003537 1.6e-11 72.8 59 66.1
SEGI_10251 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 2.2e-11 72.4 55 61.8
DCAR_022381 Daucus carota HOM05D002263 ORTHO05D003537 3.7e-11 71.6 52 67.3
Pp3c18_20260 Physcomitrium patens HOM05D002263 ORTHO05D003537 4.8e-11 71.2 67 58.2
Pp3c18_20261 Physcomitrium patens HOM05D002263 ORTHO05D003537 4.8e-11 71.2 67 58.2
Potri.009G058900 Populus trichocarpa HOM05D002263 ORTHO05D003537 4.8e-11 71.2 54 66.7
Sabra09G0043200 Salix brachista HOM05D002263 ORTHO05D003537 4.8e-11 71.2 54 66.7
SGA_v2.0_scaffold119G32746 Striga asiatica HOM05D002263 ORTHO05D003537 4.8e-11 71.2 61 62.3
Sabra16G0162200 Salix brachista HOM05D002263 ORTHO05D016312 1.1e-10 70.1 35 91.4
Migut.B01281 Erythranthe guttata HOM05D002263 ORTHO05D003537 1.4e-10 69.7 35 88.6
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 2.4e-10 68.9 40 75.0
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 2.4e-10 68.9 40 75.0
HanXRQChr01g0016471 Helianthus annuus HOM05D002263 ORTHO05D003537 3.1e-10 68.6 58 60.3
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 6.9e-10 67.4 57 57.9
HanXRQChr14g0447821 Helianthus annuus HOM05D002263 ORTHO05D003537 6.9e-10 67.4 35 85.7
Os02g0699700 Oryza sativa ssp. japonica HOM05D002263 ORTHO05D003537 6.9e-10 67.4 52 67.3
SEGI_32368 Sequoiadendron giganteum HOM05D002263 ORTHO05D003537 6.9e-10 67.4 57 59.6
Lj2C383G13 Lonicera japonica HOM05D002263 ORTHO05D003537 9.0e-10 67.0 65 58.5
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 9.0e-10 67.0 57 63.2
Ah.02g122490 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.2e-09 66.6 41 75.6
Sc16g0001930 Simmondsia chinensis HOM05D002263 ORTHO05D003537 2.0e-09 65.9 35 77.1
Rhsim09G0080900 Rhododendron simsii HOM05D002263 ORTHO05D003537 5.9e-09 64.3 51 64.7
Ah.06g183060 Amaranthus hybridus HOM05D002263 ORTHO05D003537 1.4e-07 59.7 37 73.0
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 4.2e-07 58.2 53 56.6
MCO05G739 Micromonas commoda HOM05D002263 ORTHO05D003537 7.2e-07 57.4 42 57.1
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 1.2e-06 56.6 53 52.8
SGA_v2.0_scaffold105G30414 Striga asiatica HOM05D002263 ORTHO05D003537 1.2e-06 56.6 36 69.4
SGA_v2.0_scaffold147G36324 Striga asiatica HOM05D002263 ORTHO05D016312 6.1e-06 54.3 36 63.9


User provided reference genes

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