Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.0e-200 700.7 419 100.0
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.3e-149 532.3 427 66.5
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 9.3e-128 461.1 352 88.1
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.6e-122 443.0 350 86.6
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.4e-121 438.3 352 81.0
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.3e-118 429.9 352 81.5
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 2.4e-115 419.9 360 60.8
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 4.1e-107 392.5 424 68.9
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 4.1e-107 392.5 424 68.9
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.5e-106 390.6 424 68.9
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.8e-105 386.0 424 68.4
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.5e-101 374.0 355 66.5
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.7e-101 372.1 305 87.5
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-97 360.5 303 86.1
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.0e-97 359.0 226 81.0
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.6e-93 346.7 222 79.7
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.2e-70 269.2 450 56.0
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 7.5e-69 265.4 420 58.6
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-65 254.2 319 45.1
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.6e-65 251.9 467 48.4
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 2.5e-64 250.4 304 69.4
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 4.1e-59 233.0 436 53.2
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-57 227.6 194 95.4
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.9e-57 226.9 453 52.1
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 6.6e-57 225.7 296 56.4
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 1.9e-56 224.2 427 52.7
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.1e-55 219.2 453 51.9
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 1.8e-54 217.6 384 56.0
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 3.0e-54 216.9 286 67.1
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 5.2e-54 216.1 419 34.8
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 1.2e-53 214.9 335 52.5
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 4.4e-53 213.0 452 50.2
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 4.6e-50 203.0 389 36.2
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 3.1e-46 190.3 309 61.8
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 1.2e-45 188.3 389 46.8
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 2.6e-45 187.2 323 55.1
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 9.8e-45 185.3 371 54.2
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 4.9e-44 183.0 427 38.9
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 4.1e-43 179.9 283 51.6
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 1.2e-42 178.3 371 53.9
FAN19G2386 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.9e-41 173.3 96 90.6
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 1.8e-38 164.5 326 52.5
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 3.1e-38 163.7 377 45.1
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 6.4e-36 156.0 378 44.2
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 2.1e-34 151.0 137 55.5
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 6.0e-34 149.4 106 64.2
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.0e-34 149.4 137 55.5
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 1.0e-33 148.7 177 51.4
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 1.3e-33 148.3 137 54.7
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 1.7e-33 147.9 590 28.6
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 6.6e-33 146.0 135 53.3
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 1.1e-32 145.2 135 53.3
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 1.5e-32 144.8 129 51.2
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 2.5e-32 144.1 231 57.6
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 5.6e-32 142.9 130 52.3
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 7.3e-32 142.5 130 52.3
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 7.3e-32 142.5 135 52.6
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 9.5e-32 142.1 135 52.6
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 1.6e-31 141.4 136 51.5
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 2.1e-31 141.0 135 51.9
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 2.1e-31 141.0 134 52.2
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 2.8e-31 140.6 136 52.2
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 2.8e-31 140.6 135 53.3
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 4.7e-31 139.8 135 51.1
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 4.7e-31 139.8 136 53.7
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 6.2e-31 139.4 135 52.6
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 6.2e-31 139.4 135 52.6
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 6.2e-31 139.4 391 41.9
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 6.2e-31 139.4 391 41.9
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 1.1e-30 138.7 177 49.7
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.4e-30 138.3 377 49.3
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.4e-30 138.3 135 52.6
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 1.8e-30 137.9 135 51.9
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 1.8e-30 137.9 135 51.1
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 1.8e-30 137.9 135 51.1
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 1.8e-30 137.9 131 52.7
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 1.8e-30 137.9 135 51.1
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 1.8e-30 137.9 135 51.9
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 3.1e-30 137.1 135 51.9
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 3.1e-30 137.1 135 50.4
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 3.1e-30 137.1 135 50.4
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 3.1e-30 137.1 137 51.8
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 5.2e-30 136.3 136 51.5
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 8.9e-30 135.6 134 50.0
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 8.9e-30 135.6 136 52.9
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 1.2e-29 135.2 136 52.9
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 1.2e-29 135.2 135 51.1
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 1.5e-29 134.8 132 53.0
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 1.5e-29 134.8 323 40.2
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 1.5e-29 134.8 135 50.4
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 2.0e-29 134.4 134 50.0
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 2.0e-29 134.4 135 50.4
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 2.6e-29 134.0 454 41.9
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 2.6e-29 134.0 139 51.1
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 2.6e-29 134.0 389 44.0
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 2.6e-29 134.0 135 50.4
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 2.6e-29 134.0 135 52.6
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 7.6e-29 132.5 134 48.5
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 9.9e-29 132.1 132 50.8
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 1.3e-28 131.7 301 31.6
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 1.7e-28 131.3 132 50.8
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 1.7e-28 131.3 132 50.8
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 2.2e-28 131.0 139 50.4
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 4.9e-28 129.8 219 55.7
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 8.4e-28 129.0 139 49.6
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 8.4e-28 129.0 426 35.7
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 1.4e-27 128.3 135 47.4
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 1.4e-27 128.3 135 48.1
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 1.9e-27 127.9 136 48.5
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 2.4e-27 127.5 138 50.0
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 2.4e-27 127.5 526 25.1
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 3.2e-27 127.1 138 50.0
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 4.2e-27 126.7 137 48.9
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 4.2e-27 126.7 136 47.1
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 4.2e-27 126.7 135 48.1
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 4.2e-27 126.7 135 48.1
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 4.2e-27 126.7 133 46.6
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 4.2e-27 126.7 136 48.5
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 5.4e-27 126.3 136 47.1
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 5.4e-27 126.3 124 50.0
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 5.4e-27 126.3 123 49.6
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 7.1e-27 125.9 124 50.0
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 7.1e-27 125.9 124 50.0
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 7.1e-27 125.9 136 47.1
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 9.2e-27 125.6 134 50.0
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 9.2e-27 125.6 137 47.4
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 9.2e-27 125.6 137 46.7
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 1.2e-26 125.2 137 46.7
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-26 125.2 207 60.4
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 2.1e-26 124.4 131 47.3
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 4.6e-26 123.2 135 48.9
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 4.6e-26 123.2 136 46.3
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 2.3e-25 120.9 132 47.7
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 2.3e-25 120.9 77 63.6
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 2.3e-25 120.9 134 47.8
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 2.3e-25 120.9 134 47.8
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 3.3e-24 117.1 134 45.5
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 4.3e-24 116.7 75 68.0
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 3.6e-23 113.6 84 57.1
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 9.0e-22 109.0 127 46.5
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 9.9e-21 105.5 105 52.4
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 8.4e-20 102.4 135 43.0
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 1.1e-19 102.1 124 41.9
AUR62037192 Chenopodium quinoa HOM05D003406 ORTHO05D004026 4.6e-18 96.7 113 46.9
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 3.0e-17 94.0 134 43.3
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 3.0e-17 94.0 134 43.3
TPR.G36971 Trifolium pratense HOM05D003406 ORTHO05D004026 3.0e-17 94.0 134 41.8
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.5e-16 91.7 93 49.5
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 3.3e-16 90.5 124 40.3
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 4.3e-16 90.1 108 43.5
SEGI_32752 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 5.6e-16 89.7 59 64.4
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 7.3e-16 89.4 124 39.5
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 7.3e-16 89.4 124 39.5
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 7.3e-16 89.4 124 39.5
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 7.3e-16 89.4 124 39.5
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 9.6e-16 89.0 124 40.3
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 5.3e-14 83.2 119 42.9
SMO231G0014 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 3.4e-13 80.5 96 42.7
ATR0568G096 Amborella trichopoda HOM05D003406 ORTHO05D004026 5.8e-13 79.7 110 40.9
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 9.9e-13 79.0 175 33.1
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.2e-12 77.8 58 62.1
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 8.4e-12 75.9 100 47.0
FvH4_4g16141 Fragaria vesca HOM05D003406 ORTHO05D196757 1.4e-11 75.1 71 66.2
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 1.8e-09 68.2 156 34.6
Aa31LG8G12410 Aethionema arabicum HOM05D061913 ORTHO05D030983 4.3e-08 63.5 61 45.9
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.1e-07 61.2 96 45.8


User provided reference genes

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