Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2561.2 1347 100.0
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2475.3 1346 96.6
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2410.6 1346 94.8
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2360.1 1346 93.3
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2345.9 1346 93.7
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2309.3 1346 91.8
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 2282.7 1346 90.8
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2085.8 1350 84.3
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 1733.4 1350 72.4
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 1560.8 1344 67.1
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 1367.4 1358 59.0
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 1338.9 1348 57.6
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 1338.6 1353 59.1
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 1313.1 1376 56.5
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 1285.8 1358 57.1
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 1281.2 1362 56.1
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 1266.1 1370 56.3
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 1252.3 1361 56.2
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 1248.8 1369 56.0
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 1240.3 1384 56.4
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 1236.9 1355 54.7
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 1236.9 1353 55.1
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 1234.2 1369 55.4
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 1221.5 1361 54.4
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1218.4 1361 54.4
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 1214.9 1408 53.8
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 1211.8 1355 54.5
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 1203.3 1352 53.6
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 1202.6 1361 53.9
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 1191.8 1357 54.2
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1188.3 1361 53.4
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 1187.2 1359 53.6
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1186.8 1380 54.1
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 1186.8 1354 53.9
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 1185.2 1361 53.5
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 1184.1 1359 53.5
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 1179.1 1357 54.6
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 1175.2 1356 53.7
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1147.9 1470 50.8
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 1144.8 1353 53.0
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 1139.0 1347 52.8
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 1138.6 1363 52.4
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 1138.3 1447 50.8
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 1136.7 1366 52.0
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 1130.9 1353 52.9
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 1118.2 1348 52.5
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 1083.6 1378 50.9
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 0.0e+00 1078.5 1292 52.4
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 9.2e-312 1073.9 1330 51.1
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 5.9e-309 1064.7 1364 50.1
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 1.7e-308 1063.1 1291 51.7
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 9.4e-299 1030.8 1363 48.3
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 4.8e-295 1018.5 1358 48.4
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 1.0e-292 1010.7 1357 48.4
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 1.7e-292 1010.0 1364 49.6
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 1.1e-291 1007.3 1355 48.1
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 1.2e-285 987.3 1364 47.7
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 2.0e-285 986.5 1415 46.7
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 1.3e-284 983.8 1357 47.6
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 1.7e-284 983.4 1367 47.7
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 1.9e-283 979.9 1337 47.8
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 9.5e-283 977.6 1349 47.7
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 6.1e-282 974.9 1413 46.5
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 1.4e-281 973.8 1367 47.3
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 1.8e-281 973.4 1434 46.3
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 4.4e-280 968.8 1355 47.7
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 5.8e-280 968.4 1364 47.3
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 9.8e-280 967.6 1410 46.1
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 4.9e-279 965.3 1353 47.0
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 1.3e-276 957.2 1357 47.0
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 3.9e-276 955.7 1349 47.0
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 4.7e-274 948.7 1451 46.0
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 3.1e-273 946.0 1363 46.4
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 4.0e-273 945.7 1361 46.0
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 2.0e-272 943.3 1313 46.1
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 2.7e-269 932.9 1333 47.1
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 3.3e-267 926.0 1358 45.7
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 9.5e-267 924.5 1349 46.4
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 1.4e-265 920.6 1388 45.0
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 3.7e-263 912.5 1364 46.3
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 3.5e-261 906.0 1315 46.1
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 1.1e-259 901.0 1324 46.8
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 2.6e-256 889.8 1332 45.0
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 8.4e-255 884.8 1316 45.7
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 5.1e-252 875.5 857 59.0
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 4.0e-241 839.3 1069 50.2
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 3.8e-239 832.8 1324 45.5
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 2.8e-226 790.0 1295 44.4
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 6.3e-218 762.3 1339 42.0
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 5.3e-209 732.6 1327 41.8
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 1.0e-199 701.8 1482 39.1
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 1.4e-188 664.8 541 66.0
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 5.2e-188 662.9 845 53.6
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 2.0e-160 571.2 1042 42.2
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 2.7e-160 570.9 1341 36.4
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 3.5e-160 570.5 946 44.8
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 2.3e-159 567.8 807 50.3
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 2.3e-159 567.8 807 50.3
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 3.0e-159 567.4 543 57.6
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 5.0e-159 566.6 542 57.4
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 8.1e-157 559.3 1374 37.5
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 4.0e-156 557.0 1413 35.7
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.5e-150 537.7 931 41.7
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 1.7e-138 498.4 1034 36.4
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 1.1e-134 485.7 540 52.4
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 1.3e-133 482.3 430 68.6
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 4.8e-117 427.2 452 52.9
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.5e-99 369.0 443 49.4
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 2.1e-80 305.4 332 50.3
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 6.8e-71 273.9 457 44.2
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 1.3e-53 216.5 464 40.7
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.8e-48 198.7 141 72.3
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 8.9e-47 193.7 189 68.8
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 1.4e-44 186.4 266 47.7
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 2.4e-44 185.7 693 33.6
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 4.6e-43 181.4 824 25.4
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 3.0e-42 178.7 1368 25.1
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 1.2e-40 173.3 121 66.9
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 1.2e-38 166.8 1566 24.3
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 1.2e-32 146.7 176 54.0
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 4.4e-30 138.3 335 35.5
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.9e-28 132.9 252 34.1
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 8.6e-26 124.0 143 48.3
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.3e-25 122.1 397 34.0
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 4.9e-21 108.2 894 24.2
CDE04G1213 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.2e-19 103.6 300 36.3
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.9e-17 96.3 97 62.9
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 2.5e-17 95.9 128 49.2
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 4.8e-16 91.7 176 36.4
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 6.4e-13 81.3 78 60.3
Actinidia03885 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.9e-12 79.7 65 69.2
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 8.7e-10 70.9 104 43.3
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 8.7e-10 70.9 46 76.1
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 2.5e-09 69.3 104 46.2
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 3.3e-09 68.9 125 40.8
arahy.Tifrunner.gnm1.ann1.U6LB1L Arachis hypogaea HOM05D046571 ORTHO05D038823 4.3e-09 68.6 56 67.9
Actinidia03992 Actinidia chinensis HOM05D004426 ORTHO05D005417 7.4e-09 67.8 78 43.6
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 1.3e-08 67.0 46 73.9
Psat2g137560 Pisum sativum HOM05D004426 ORTHO05D005417 2.1e-08 66.2 104 45.2
Actinidia03884 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.8e-08 65.9 129 38.8
ECA233G4409 Erigeron canadensis HOM05D004426 ORTHO05D005417 3.7e-08 65.5 60 63.3
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 4.8e-08 65.1 52 59.6
SHI25003 Sapria himalayana HOM05D004426 ORTHO05D002750 3.4e-06 58.9 95 37.9


User provided reference genes

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