Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G3352 Fragaria x ananassa HOM05D003157 ORTHO05D012168 1.2e-121 439.9 218 100.0
FAN18G2478 Fragaria x ananassa HOM05D003157 ORTHO05D012168 3.1e-111 405.2 218 93.1
FvH4_5g06081 Fragaria vesca HOM05D003157 ORTHO05D012168 2.0e-110 402.5 218 93.1
FAN13G2541 Fragaria x ananassa HOM05D003157 ORTHO05D012168 4.0e-106 388.3 219 90.9
FAN04G1049 Fragaria x ananassa HOM05D003157 ORTHO05D012168 4.7e-99 364.8 205 91.2
RcHm_v2.0_Chr7g0192771 Rosa chinensis HOM05D003157 ORTHO05D012168 3.5e-86 322.0 218 78.4
Prupe.5G165900 Prunus persica HOM05D003157 ORTHO05D012168 3.1e-50 202.6 226 52.2
MD06G1166000 Malus domestica HOM05D003157 ORTHO05D012168 4.8e-35 152.1 203 46.8
Prupe.5G165800 Prunus persica HOM05D003157 ORTHO05D004447 4.5e-25 119.0 395 29.4
FvH4_5g06270 Fragaria vesca HOM05D003157 ORTHO05D004447 1.0e-21 107.8 359 30.9
RcHm_v2.0_Chr7g0192591 Rosa chinensis HOM05D003157 ORTHO05D004447 1.0e-21 107.8 363 28.7
MD06G1165900 Malus domestica HOM05D003157 ORTHO05D004447 3.0e-21 106.3 392 28.6
QL10p006899 Quercus lobata HOM05D003157 ORTHO05D004447 6.7e-21 105.1 116 57.8
FAN04G1965 Fragaria x ananassa HOM05D003157 ORTHO05D004447 4.4e-20 102.4 360 29.7
Potri.015G084000 Populus trichocarpa HOM05D003157 ORTHO05D004447 9.7e-20 101.3 124 51.6
GSVIVG01007647001 Vitis vinifera HOM05D003157 ORTHO05D004447 2.2e-19 100.1 100 55.0
Atru.chr9.2574 Acer truncatum HOM05D003157 ORTHO05D004447 1.1e-18 97.8 183 39.9
Potri.012G085700 Populus trichocarpa HOM05D003157 ORTHO05D004447 1.1e-18 97.8 116 50.9
Thecc.03G025700 Theobroma cacao HOM05D003157 ORTHO05D004447 1.1e-18 97.8 119 49.6
FAN13G0746 Fragaria x ananassa HOM05D003157 ORTHO05D004447 1.4e-18 97.4 348 29.0
Manes.14G060700 Manihot esculenta HOM05D003157 ORTHO05D004447 1.4e-18 97.4 128 48.4
Ciclev10024152m.g Citrus clementina HOM05D003157 ORTHO05D004447 1.8e-18 97.1 178 41.0
Eucgr.K02800 Eucalyptus grandis HOM05D003157 ORTHO05D004447 7.0e-18 95.1 185 37.3
Actinidia08960 Actinidia chinensis HOM05D003157 ORTHO05D004447 9.1e-18 94.7 116 50.0
Manes.06G110100 Manihot esculenta HOM05D003157 ORTHO05D004447 9.1e-18 94.7 116 46.6
Sabra15G0107200 Salix brachista HOM05D003157 ORTHO05D004447 9.1e-18 94.7 108 50.0
Glyma.05G041600 Glycine max HOM05D003157 ORTHO05D004447 2.0e-17 93.6 99 51.5
Lalb_Chr13g0297581 Lupinus albus HOM05D003157 ORTHO05D004447 3.5e-17 92.8 109 47.7
Sabra12G0061600 Salix brachista HOM05D003157 ORTHO05D004447 5.9e-17 92.0 116 50.0
CANSAT80G2678 Cannabis sativa HOM05D003157 ORTHO05D004447 1.0e-16 91.3 116 44.8
Gohir.A11G040300 Gossypium hirsutum HOM05D003157 ORTHO05D004447 1.0e-16 91.3 101 51.5
Gohir.D11G043500 Gossypium hirsutum HOM05D003157 ORTHO05D004447 1.0e-16 91.3 101 51.5
Gorai.007G046900 Gossypium raimondii HOM05D003157 ORTHO05D004447 1.0e-16 91.3 101 51.5
VMungo1215G0567 Vigna mungo HOM05D003157 ORTHO05D004447 1.0e-16 91.3 119 44.5
Glyma.17G084700 Glycine max HOM05D003157 ORTHO05D004447 2.2e-16 90.1 99 49.5
Sopen06g028060 Solanum pennellii HOM05D003157 ORTHO05D004447 2.2e-16 90.1 135 43.7
Gohir.D03G106700 Gossypium hirsutum HOM05D003157 ORTHO05D004447 2.9e-16 89.7 119 47.1
Gorai.003G115800 Gossypium raimondii HOM05D003157 ORTHO05D004447 2.9e-16 89.7 119 47.1
MD14G1171800 Malus domestica HOM05D003157 ORTHO05D004447 2.9e-16 89.7 171 38.0
Solyc06g071770.4 Solanum lycopersicum HOM05D003157 ORTHO05D004447 2.9e-16 89.7 135 43.0
Phvul.003G205000 Phaseolus vulgaris HOM05D003157 ORTHO05D004447 3.8e-16 89.4 150 40.0
CiPaw.11G019800 Carya illinoinensis HOM05D003157 ORTHO05D004447 5.0e-16 89.0 121 44.6
Gohir.A03G056900 Gossypium hirsutum HOM05D003157 ORTHO05D004447 5.0e-16 89.0 119 46.2
CSS0041144 Camellia sinensis var. sinensis HOM05D003157 ORTHO05D004447 6.5e-16 88.6 178 37.6
Medtr4g104880 Medicago truncatula HOM05D003157 ORTHO05D004447 6.5e-16 88.6 96 49.0
TAR629G0508 Trochodendron aralioides HOM05D003157 ORTHO05D004447 6.5e-16 88.6 100 50.0
Lalb_Chr07g0182971 Lupinus albus HOM05D003157 ORTHO05D004447 1.1e-15 87.8 121 43.8
Cpa.g.sc159.27 Carica papaya HOM05D003157 ORTHO05D004447 1.9e-15 87.0 116 45.7
PGR044G1972 Punica granatum HOM05D003157 ORTHO05D004447 1.9e-15 87.0 100 49.0
A08p21390 Brassica napus HOM05D003157 ORTHO05D004447 3.2e-15 86.3 294 29.6
Lalb_Chr12g0201891 Lupinus albus HOM05D003157 ORTHO05D004447 3.2e-15 86.3 109 46.8
Nitab4.5_0008713g0020 Nicotiana tabacum HOM05D003157 ORTHO05D004447 3.2e-15 86.3 109 45.9
Rhsim12G0167900 Rhododendron simsii HOM05D003157 ORTHO05D004447 4.2e-15 85.9 177 35.6
vmacro16645 Vaccinium macrocarpon HOM05D003157 ORTHO05D004447 4.2e-15 85.9 177 35.0
Psat4g060880 Pisum sativum HOM05D003157 ORTHO05D004447 5.5e-15 85.5 128 42.2
TWI23G0818 Tripterygium wilfordii HOM05D003157 ORTHO05D004447 5.5e-15 85.5 107 47.7
TAR371G0612 Trochodendron aralioides HOM05D003157 ORTHO05D004447 5.5e-15 85.5 108 48.1
vmacro19300 Vaccinium macrocarpon HOM05D003157 ORTHO05D004447 5.5e-15 85.5 114 43.9
BraA08t34089Z Brassica rapa HOM05D003157 ORTHO05D004447 1.2e-14 84.3 289 29.8
Lj4g0014353 Lotus japonicus HOM05D003157 ORTHO05D004447 1.2e-14 84.3 100 48.0
Actinidia08033 Actinidia chinensis HOM05D000048 ORTHO05D004447 2.7e-14 83.2 106 46.2
Actinidia24597 Actinidia chinensis HOM05D003157 ORTHO05D004447 2.7e-14 83.2 106 46.2
PGSC0003DMG400027073 Solanum tuberosum HOM05D003157 ORTHO05D004447 2.7e-14 83.2 135 42.2
ClCG01G013500 Citrullus lanatus HOM05D003157 ORTHO05D004447 3.6e-14 82.8 120 44.2
CAN.G993.20 Capsicum annuum HOM05D003157 ORTHO05D004447 4.7e-14 82.4 120 45.0
Dinv20600 Davidia involucrata HOM05D003157 ORTHO05D004447 4.7e-14 82.4 178 37.1
TWI14G1342 Tripterygium wilfordii HOM05D003157 ORTHO05D004447 8.0e-14 81.6 177 35.0
BcaB03g12442 Brassica carinata HOM05D003157 ORTHO05D004447 1.0e-13 81.3 281 27.0
FAN08G1011 Fragaria x ananassa HOM05D003157 ORTHO05D004447 1.0e-13 81.3 123 41.5
Rhsim08G0177500 Rhododendron simsii HOM05D003157 ORTHO05D004447 1.0e-13 81.3 116 44.0
Sed0005003 Sechium edule HOM05D003157 ORTHO05D004447 1.0e-13 81.3 85 48.2
CARHR232070 Cardamine hirsuta HOM05D003157 ORTHO05D004447 1.8e-13 80.5 297 27.6
arahy.Tifrunner.gnm1.ann1.UDW2C6 Arachis hypogaea HOM05D003157 ORTHO05D004447 2.3e-13 80.1 110 47.3
Nitab4.5_0000003g0820 Nicotiana tabacum HOM05D003157 ORTHO05D004447 2.3e-13 80.1 109 44.0
Ca_14277_v3 Cicer arietinum L. HOM05D003157 ORTHO05D004447 3.0e-13 79.7 187 36.9
FAN18G2672 Fragaria x ananassa HOM05D003157 ORTHO05D004447 3.0e-13 79.7 321 28.3
BcaC07g38161 Brassica carinata HOM05D003157 ORTHO05D004447 4.0e-13 79.3 303 28.7
Cfa019214 Carpinus fangiana HOM05D003157 ORTHO05D004447 4.0e-13 79.3 95 46.3
CDE02G1794 Ceratophyllum demersum HOM05D003157 ORTHO05D004447 4.0e-13 79.3 106 44.3
Medtr4g104900 Medicago truncatula HOM05D003157 ORTHO05D012168 4.0e-13 79.3 94 43.6
TPR.G37494 Trifolium pratense HOM05D003157 ORTHO05D004447 4.0e-13 79.3 131 38.9
Hund02785 Selenicereus undatus HOM05D003157 ORTHO05D004447 5.2e-13 79.0 120 42.5
arahy.Tifrunner.gnm1.ann1.RZMV9E Arachis hypogaea HOM05D003157 ORTHO05D004447 6.7e-13 78.6 111 44.1
Haze_07584 Corylus avellana HOM05D003157 ORTHO05D004447 8.8e-13 78.2 102 50.0
BcaC09g50840 Brassica carinata HOM05D003157 ORTHO05D004447 1.2e-12 77.8 297 29.6
BolC1t01929H Brassica oleracea HOM05D003157 ORTHO05D004447 1.2e-12 77.8 295 27.8
A01p16030 Brassica napus HOM05D003157 ORTHO05D004447 1.5e-12 77.4 297 29.6
CDE04G2303 Ceratophyllum demersum HOM05D003157 ORTHO05D004447 1.5e-12 77.4 100 44.0
Lj5A130T68 Lonicera japonica HOM05D003157 ORTHO05D004447 1.5e-12 77.4 100 44.0
Oeu040857.2 Olea europaea HOM05D003157 ORTHO05D004447 1.5e-12 77.4 114 43.0
Aqoxy3G01217 Aquilegia oxysepala HOM05D003157 ORTHO05D004447 2.0e-12 77.0 116 39.7
PGSC0003DMG400018122 Solanum tuberosum HOM05D003157 ORTHO05D004447 2.0e-12 77.0 213 33.3
BolC8t48585H Brassica oleracea HOM05D003157 ORTHO05D004447 2.6e-12 76.6 291 29.2
Peaxi162Scf00763g00430 Petunia axillaris HOM05D003157 ORTHO05D004447 2.6e-12 76.6 118 41.5
SHI17273 Sapria himalayana HOM05D003157 ORTHO05D004447 2.6e-12 76.6 89 41.6
C01p20020 Brassica napus HOM05D003157 ORTHO05D004447 3.3e-12 76.3 295 26.8
C07p53750 Brassica napus HOM05D003157 ORTHO05D004447 3.3e-12 76.3 115 40.0
ClCG03G002990 Citrullus lanatus HOM05D003157 ORTHO05D004447 3.3e-12 76.3 82 51.2
Solyc03g112230.4 Solanum lycopersicum HOM05D003157 ORTHO05D004447 4.4e-12 75.9 211 33.6
AUR62028729 Chenopodium quinoa HOM05D003157 ORTHO05D004447 5.7e-12 75.5 124 40.3
Sopen03g031330 Solanum pennellii HOM05D003157 ORTHO05D004447 5.7e-12 75.5 211 33.2
Thhalv10024557m.g Eutrema salsugineum HOM05D003157 ORTHO05D004447 9.7e-12 74.7 79 49.4
Oeu020884.3 Olea europaea HOM05D003157 ORTHO05D004447 9.7e-12 74.7 93 47.3
BraA01t01537Z Brassica rapa HOM05D003157 ORTHO05D004447 1.3e-11 74.3 297 29.3
Medtr4g104940 Medicago truncatula HOM05D003157 ORTHO05D012168 1.3e-11 74.3 119 38.7
Sp7g22680 Schrenkiella parvula HOM05D003157 ORTHO05D004447 1.3e-11 74.3 82 48.8
BolC7t45866H Brassica oleracea HOM05D003157 ORTHO05D004447 1.7e-11 73.9 102 41.2
Peaxi162Scf00089g01334 Petunia axillaris HOM05D003157 ORTHO05D004447 2.2e-11 73.6 212 32.1
Cc04_g11550 Coffea canephora HOM05D003157 ORTHO05D004447 2.8e-11 73.2 116 40.5
DCAR_026172 Daucus carota HOM05D003157 ORTHO05D004447 2.8e-11 73.2 91 46.2
Aqoxy3G03011 Aquilegia oxysepala HOM05D003157 ORTHO05D012168 3.7e-11 72.8 100 41.0
AL7G28510 Arabidopsis lyrata HOM05D003157 ORTHO05D004447 3.7e-11 72.8 96 43.8
MELO3C002297.2 Cucumis melo HOM05D003157 ORTHO05D004447 3.7e-11 72.8 122 38.5
CsaV3_1G008830 Cucumis sativus L. HOM05D003157 ORTHO05D004447 3.7e-11 72.8 121 39.7
SalBow6G1229 Salvia bowleyana HOM05D003157 ORTHO05D004447 3.7e-11 72.8 98 42.9
THA.LOC104809775 Tarenaya hassleriana HOM05D003157 ORTHO05D004447 3.7e-11 72.8 77 46.8
AT4G24690 Arabidopsis thaliana HOM05D003157 ORTHO05D004447 4.8e-11 72.4 127 37.0
AUR62008147 Chenopodium quinoa HOM05D003157 ORTHO05D004447 4.8e-11 72.4 200 31.0
COL.COLO4_24272 Corchorus olitorius HOM05D003157 ORTHO05D004447 4.8e-11 72.4 123 39.8
ECA232G3241 Erigeron canadensis HOM05D003157 ORTHO05D004447 6.3e-11 72.0 111 38.7
ATR0824G119 Amborella trichopoda HOM05D003157 ORTHO05D004447 8.2e-11 71.6 98 42.9
Nitab4.5_0010452g0010 Nicotiana tabacum HOM05D003157 ORTHO05D004447 1.1e-10 71.2 190 32.6
PSO754G0123 Papaver somniferum HOM05D003157 ORTHO05D004447 1.1e-10 71.2 159 33.3
Aa31LG4G9790 Aethionema arabicum HOM05D003157 ORTHO05D004447 1.4e-10 70.9 93 43.0
MSTRG.11494 Avicennia marina HOM05D003157 ORTHO05D004447 1.4e-10 70.9 99 45.5
CiPaw.11G020300 Carya illinoinensis HOM05D003157 ORTHO05D012168 1.4e-10 70.9 67 52.2
Nitab4.5_0001793g0010 Nicotiana tabacum HOM05D003157 ORTHO05D004447 1.4e-10 70.9 190 32.6
MSTRG.9691 Avicennia marina HOM05D003157 ORTHO05D004447 1.8e-10 70.5 120 40.8
EL10Ac5g10658 Beta vulgaris HOM05D003157 ORTHO05D004447 1.8e-10 70.5 189 32.3
Lsat_1_v5_gn_1_27780 Lactuca sativa HOM05D003157 ORTHO05D004447 2.4e-10 70.1 69 53.6
Psat4g060960 Pisum sativum HOM05D003157 ORTHO05D012168 3.1e-10 69.7 82 45.1
PSO111G0086 Papaver somniferum HOM05D003157 ORTHO05D004447 4.1e-10 69.3 159 32.1
SGA_v2.0_scaffold7G04161 Striga asiatica HOM05D003157 ORTHO05D004447 4.1e-10 69.3 99 43.4
DCAR_016024 Daucus carota HOM05D003157 ORTHO05D004447 5.3e-10 68.9 65 47.7
Migut.D01995 Erythranthe guttata HOM05D003157 ORTHO05D004447 5.3e-10 68.9 126 38.1
Lsat_1_v5_gn_4_77240 Lactuca sativa HOM05D003157 ORTHO05D004447 5.3e-10 68.9 106 40.6
A03p55470 Brassica napus HOM05D003157 ORTHO05D004447 7.0e-10 68.6 115 38.3
BraA03t14620Z Brassica rapa HOM05D003157 ORTHO05D004447 7.0e-10 68.6 115 38.3
Carub.0007s1637 Capsella rubella HOM05D003157 ORTHO05D004447 7.0e-10 68.6 295 28.8
Medtr4g104890 Medicago truncatula HOM05D003157 ORTHO05D012168 9.1e-10 68.2 94 41.5
CAN.G338.32 Capsicum annuum HOM05D003157 ORTHO05D004447 1.2e-09 67.8 210 31.9
SEGI_11452 Sequoiadendron giganteum HOM05D003157 ORTHO05D004447 1.2e-09 67.8 115 32.2
Sc12g0005010 Simmondsia chinensis HOM05D003157 ORTHO05D004447 1.2e-09 67.8 101 45.5
TPR.G37470 Trifolium pratense HOM05D003157 ORTHO05D004447 2.7e-09 66.6 82 37.8
Medtr4g104950 Medicago truncatula HOM05D003157 ORTHO05D012168 3.5e-09 66.2 80 45.0
DCAR_021588 Daucus carota HOM05D003157 ORTHO05D004447 5.9e-09 65.5 80 45.0
SGA_v2.0_scaffold114G31812 Striga asiatica HOM05D003157 ORTHO05D004447 5.9e-09 65.5 98 39.8
Ca_03503_v3 Cicer arietinum L. HOM05D003157 ORTHO05D004447 7.7e-09 65.1 60 56.7
Medtr4g104980 Medicago truncatula HOM05D003157 ORTHO05D012168 7.7e-09 65.1 82 40.2
BcaC06g32868 Brassica carinata HOM05D003157 ORTHO05D004447 1.0e-08 64.7 143 32.2
TPR.G37497 Trifolium pratense HOM05D003157 ORTHO05D012168 1.3e-08 64.3 84 40.5
unitig_37.g12746 Utricularia gibba HOM05D003157 ORTHO05D004447 1.7e-08 63.9 138 33.3
HanXRQChr10g0296081 Helianthus annuus HOM05D003157 ORTHO05D004447 2.2e-08 63.5 114 36.0
Medtr4g104960 Medicago truncatula HOM05D003157 ORTHO05D012168 2.2e-08 63.5 81 42.0
Sed0026079 Sechium edule HOM05D003157 ORTHO05D004447 2.2e-08 63.5 85 40.0
MBI18_g17021_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.0e-08 62.4 144 36.1
SEGI_31497 Sequoiadendron giganteum HOM05D003157 ORTHO05D012168 8.5e-08 61.6 85 37.6
Ah.11g051160 Amaranthus hybridus HOM05D003157 ORTHO05D004447 1.1e-07 61.2 132 37.1
Lj9A442T64 Lonicera japonica HOM05D003157 ORTHO05D004447 1.1e-07 61.2 61 49.2
Medtr4g104990 Medicago truncatula HOM05D003157 ORTHO05D012168 1.1e-07 61.2 83 41.0
Nn3g16701 Nelumbo nucifera HOM05D003157 ORTHO05D004447 1.5e-07 60.8 107 36.4
HanXRQChr16g0504701 Helianthus annuus HOM05D003157 ORTHO05D004447 2.5e-07 60.1 104 37.5
Lsat_1_v5_gn_8_1421 Lactuca sativa HOM05D003157 ORTHO05D012168 3.2e-07 59.7 72 45.8
ECA232G3078 Erigeron canadensis HOM05D000048 ORTHO05D002613 7.2e-07 58.5 106 39.6
Rhsim10G0015600 Rhododendron simsii HOM05D001812 ORTHO05D001874 9.4e-07 58.2 141 32.6
Migut.O00157 Erythranthe guttata HOM05D003157 ORTHO05D004447 1.6e-06 57.4 99 38.4
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 2.7e-06 56.6 94 38.3
Dinv15230 Davidia involucrata HOM05D003157 ORTHO05D004447 3.6e-06 56.2 69 47.8
Migut.O00156 Erythranthe guttata HOM05D003157 ORTHO05D004447 3.6e-06 56.2 177 31.6
MBI19_g29861_MAGBIO Magnolia biondii HOM05D003157 ORTHO05D004447 3.6e-06 56.2 129 35.7
Rhsim10G0016700 Rhododendron simsii HOM05D001812 ORTHO05D001874 4.7e-06 55.8 89 37.1


User provided reference genes

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