Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2535 Fragaria x ananassa HOM05D003955 ORTHO05D004684 0.0e+00 1175.2 621 100.0
FAN04G3226 Fragaria x ananassa HOM05D003955 ORTHO05D004684 0.0e+00 1162.9 619 99.2
FAN13G1787 Fragaria x ananassa HOM05D003955 ORTHO05D004684 0.0e+00 1162.5 619 99.4
FAN18G0775 Fragaria x ananassa HOM05D003955 ORTHO05D004684 0.0e+00 1120.9 619 96.1
FvH4_5g17110 Fragaria vesca HOM05D003955 ORTHO05D004684 0.0e+00 1116.3 619 96.0
RcHm_v2.0_Chr7g0178701 Rosa chinensis HOM05D003955 ORTHO05D004684 0.0e+00 1101.3 619 94.2
Prupe.5G230600 Prunus persica HOM05D003955 ORTHO05D004684 8.2e-290 1000.0 619 85.8
MD06G1229500 Malus domestica HOM05D003955 ORTHO05D004684 5.5e-286 987.3 618 83.8
CiPaw.15G139700 Carya illinoinensis HOM05D003955 ORTHO05D004684 1.6e-285 985.7 619 84.2
Cfa019689 Carpinus fangiana HOM05D003955 ORTHO05D004684 6.1e-285 983.8 619 82.7
MD14G1234400 Malus domestica HOM05D003955 ORTHO05D004684 8.0e-285 983.4 618 82.2
Gorai.007G004500 Gossypium raimondii HOM05D003955 ORTHO05D004684 2.0e-283 978.8 619 78.8
Gohir.D11G003500 Gossypium hirsutum HOM05D003955 ORTHO05D004684 4.4e-283 977.6 619 78.7
QL10p027883 Quercus lobata HOM05D003955 ORTHO05D004684 2.2e-282 975.3 619 82.6
Thecc.03G050300 Theobroma cacao HOM05D003955 ORTHO05D004684 1.4e-281 972.6 619 79.0
CANSAT80G2537 Cannabis sativa HOM05D003955 ORTHO05D004684 2.4e-281 971.8 619 78.7
GSVIVG01008399001 Vitis vinifera HOM05D003955 ORTHO05D004684 7.0e-281 970.3 619 80.5
Gohir.A11G004000 Gossypium hirsutum HOM05D003955 ORTHO05D004684 9.1e-281 969.9 618 78.8
TWI15G0606 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 1.7e-279 965.7 617 75.4
CsaV3_1G004220 Cucumis sativus L. HOM05D003955 ORTHO05D004684 6.1e-277 957.2 618 77.0
TAR622G0688 Trochodendron aralioides HOM05D003955 ORTHO05D004684 6.1e-277 957.2 619 77.4
Haze_18797 Corylus avellana HOM05D003955 ORTHO05D004684 8.0e-277 956.8 619 81.4
Ciclev10007782m.g Citrus clementina HOM05D003955 ORTHO05D004684 1.5e-275 952.6 619 78.4
Cpa.g.sc3.440 Carica papaya HOM05D003955 ORTHO05D004684 2.0e-275 952.2 619 78.5
MELO3C017347.2 Cucumis melo HOM05D003955 ORTHO05D004684 2.0e-275 952.2 618 76.7
VMungo0251G3447 Vigna mungo HOM05D003955 ORTHO05D004684 7.5e-275 950.3 619 76.7
Hma1.2p1_0669F.1_g200270 Hydrangea macrophylla HOM05D003955 ORTHO05D004684 1.3e-274 949.5 621 79.9
Manes.06G008300 Manihot esculenta HOM05D003955 ORTHO05D004684 1.7e-274 949.1 619 79.0
Sed0001638 Sechium edule HOM05D003955 ORTHO05D004684 2.2e-274 948.7 618 76.5
ClCG06G014440 Citrullus lanatus HOM05D003955 ORTHO05D004684 4.8e-274 947.6 612 76.3
Sed0014282 Sechium edule HOM05D003955 ORTHO05D004684 8.3e-274 946.8 618 76.2
Glyma.08G051900 Glycine max HOM05D003955 ORTHO05D004684 2.4e-273 945.3 619 76.6
vmacro16423 Vaccinium macrocarpon HOM05D003955 ORTHO05D004684 2.4e-273 945.3 620 79.5
Glyma.05G243900 Glycine max HOM05D003955 ORTHO05D004684 3.1e-273 944.9 617 76.2
TAR374G0009 Trochodendron aralioides HOM05D003955 ORTHO05D004684 3.1e-273 944.9 619 79.2
Potri.012G049200 Populus trichocarpa HOM05D003955 ORTHO05D004684 9.1e-273 943.3 619 80.0
COL.COLO4_22318 Corchorus olitorius HOM05D003955 ORTHO05D004684 1.2e-272 943.0 646 74.5
MSTRG.9290 Avicennia marina HOM05D003955 ORTHO05D004684 2.0e-272 942.2 619 72.7
Ca_17215_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 2.0e-272 942.2 618 77.0
Ca_17217_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 2.0e-272 942.2 618 77.0
Lalb_Chr05g0221841 Lupinus albus HOM05D003955 ORTHO05D004684 3.5e-272 941.4 619 76.3
Migut.D01456 Erythranthe guttata HOM05D003955 ORTHO05D004684 5.9e-272 940.6 619 75.9
Lj4g0027787 Lotus japonicus HOM05D003955 ORTHO05D004684 1.0e-271 939.9 619 75.4
Phvul.002G327600 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 1.7e-271 939.1 619 77.9
Potri.015G041200 Populus trichocarpa HOM05D003955 ORTHO05D004684 3.8e-271 937.9 619 79.0
Rhsim12G0139700 Rhododendron simsii HOM05D003955 ORTHO05D004684 5.5e-270 934.1 620 78.9
Sabra15G0055900 Salix brachista HOM05D003955 ORTHO05D004684 1.6e-269 932.6 659 74.5
TWI81G0555 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 1.6e-269 932.6 606 74.6
Psat7g000120 Pisum sativum HOM05D003955 ORTHO05D004684 4.7e-269 931.0 620 75.2
PGSC0003DMG400005655 Solanum tuberosum HOM05D003955 ORTHO05D004684 8.0e-269 930.2 619 76.1
Sabra12G0034600 Salix brachista HOM05D003955 ORTHO05D004684 1.0e-268 929.9 632 74.5
THA.LOC104820357 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 2.3e-268 928.7 618 75.2
Dinv05158 Davidia involucrata HOM05D003955 ORTHO05D004684 8.9e-268 926.8 618 75.6
Peaxi162Scf00683g00157 Petunia axillaris HOM05D003955 ORTHO05D004684 8.9e-268 926.8 619 78.5
Nitab4.5_0001158g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 1.5e-267 926.0 631 74.6
PGR083G2578 Punica granatum HOM05D003955 ORTHO05D004684 1.5e-267 926.0 617 77.0
Sopen03g037980 Solanum pennellii HOM05D003955 ORTHO05D004684 1.5e-267 926.0 619 75.3
Solyc03g119090.3 Solanum lycopersicum HOM05D003955 ORTHO05D004684 2.0e-267 925.6 619 75.4
CSS0005322 Camellia sinensis var. sinensis HOM05D003955 ORTHO05D004684 4.4e-267 924.5 619 76.7
Nitab4.5_0001644g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 4.4e-267 924.5 642 73.5
Medtr8g106820 Medicago truncatula HOM05D003955 ORTHO05D004684 9.8e-267 923.3 619 75.8
SGA_v2.0_scaffold25G10972 Striga asiatica HOM05D003955 ORTHO05D004684 1.3e-266 922.9 619 75.3
Aqoxy3G04013 Aquilegia oxysepala HOM05D003955 ORTHO05D004684 2.7e-264 915.2 619 76.9
Sabra15G0063600 Salix brachista HOM05D003955 ORTHO05D004684 1.7e-263 912.5 625 76.3
HanXRQChr10g0314661 Helianthus annuus HOM05D003955 ORTHO05D004684 6.6e-263 910.6 619 72.9
Dinv26502 Davidia involucrata HOM05D003955 ORTHO05D004684 1.1e-262 909.8 616 78.1
Eucgr.K02263 Eucalyptus grandis HOM05D003955 ORTHO05D004684 1.9e-262 909.1 619 76.7
DCAR_014770 Daucus carota HOM05D003955 ORTHO05D004684 3.3e-262 908.3 619 73.3
Aa31LG8G4920 Aethionema arabicum HOM05D003955 ORTHO05D004684 4.0e-260 901.4 616 73.5
Lsat_1_v5_gn_5_91461 Lactuca sativa HOM05D003955 ORTHO05D004684 5.2e-260 901.0 620 72.3
Atru.chr11.420 Acer truncatum HOM05D003955 ORTHO05D004684 1.5e-259 899.4 618 74.1
Sp3g16180 Schrenkiella parvula HOM05D003955 ORTHO05D004684 1.5e-259 899.4 618 73.9
PSO782G1387 Papaver somniferum HOM05D003955 ORTHO05D004684 9.8e-259 896.7 619 73.2
Thhalv10020321m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 1.7e-258 896.0 618 73.3
CARHR093380 Cardamine hirsuta HOM05D003955 ORTHO05D004684 4.9e-258 894.4 618 73.1
PSO063G1948 Papaver somniferum HOM05D003955 ORTHO05D004684 1.2e-256 889.8 619 73.2
Manes.15G126700 Manihot esculenta HOM05D003955 ORTHO05D004684 2.0e-256 889.0 619 72.7
Carub.0003s1778 Capsella rubella HOM05D003955 ORTHO05D004684 2.7e-256 888.6 618 72.8
DCAR_023230 Daucus carota HOM05D003955 ORTHO05D004684 2.7e-256 888.6 617 71.2
ECA234G1883 Erigeron canadensis HOM05D003955 ORTHO05D004684 6.0e-256 887.5 604 73.2
COL.COLO4_20464 Corchorus olitorius HOM05D003955 ORTHO05D004684 7.8e-256 887.1 617 70.0
AUR62014196 Chenopodium quinoa HOM05D003955 ORTHO05D004684 1.3e-255 886.3 616 70.8
Medtr1g107560 Medicago truncatula HOM05D003955 ORTHO05D004684 1.3e-255 886.3 617 69.2
Lj2A556T29 Lonicera japonica HOM05D003955 ORTHO05D004684 1.1e-254 883.2 619 74.5
CDE04G0774 Ceratophyllum demersum HOM05D003955 ORTHO05D004684 1.9e-254 882.5 619 74.2
AUR62041238 Chenopodium quinoa HOM05D003955 ORTHO05D004684 1.9e-254 882.5 616 72.1
AT3G18060 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 7.3e-254 880.6 618 72.5
AL3G31220 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 2.8e-253 878.6 618 72.5
C05p48110 Brassica napus HOM05D003955 ORTHO05D004684 4.7e-253 877.9 617 72.6
BolC5t33552H Brassica oleracea HOM05D003955 ORTHO05D004684 8.0e-253 877.1 617 72.4
Gorai.002G180400 Gossypium raimondii HOM05D003955 ORTHO05D004684 8.0e-253 877.1 617 68.1
arahy.Tifrunner.gnm1.ann1.MW1RK6 Arachis hypogaea HOM05D003955 ORTHO05D004684 6.8e-252 874.0 620 70.0
arahy.Tifrunner.gnm1.ann1.I5E1T8 Arachis hypogaea HOM05D003955 ORTHO05D004684 1.2e-251 873.2 618 70.1
A05p31710 Brassica napus HOM05D003955 ORTHO05D004684 4.4e-251 871.3 617 72.0
BraA05t22004Z Brassica rapa HOM05D003955 ORTHO05D004684 4.4e-251 871.3 617 72.0
Lj5g0018825 Lotus japonicus HOM05D003955 ORTHO05D004684 5.8e-251 870.9 618 72.2
Glyma.20G126400 Glycine max HOM05D003955 ORTHO05D004684 7.5e-251 870.5 618 70.2
Sc11g0004100 Simmondsia chinensis HOM05D003955 ORTHO05D004684 1.9e-249 865.9 619 71.4
Psat6g220280 Pisum sativum HOM05D003955 ORTHO05D004684 2.4e-249 865.5 617 70.2
TPR.G13862 Trifolium pratense HOM05D003955 ORTHO05D004684 2.4e-249 865.5 617 69.9
Ciclev10014635m.g Citrus clementina HOM05D003955 ORTHO05D004684 3.2e-249 865.1 615 71.4
Cpa.g.sc211.2 Carica papaya HOM05D003955 ORTHO05D004684 1.2e-248 863.2 620 71.9
VMungo0720G1874 Vigna mungo HOM05D003955 ORTHO05D004684 2.1e-248 862.4 618 70.9
ATR0686G116 Amborella trichopoda HOM05D003955 ORTHO05D004684 2.7e-248 862.1 620 70.6
Lj6A27G8 Lonicera japonica HOM05D003955 ORTHO05D004684 8.1e-245 850.5 701 66.6
Phvul.007G038100 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 1.4e-244 849.7 618 69.7
Oeu061232.2 Olea europaea HOM05D003955 ORTHO05D004684 1.8e-244 849.4 697 62.4
Hund24990 Selenicereus undatus HOM05D003955 ORTHO05D004684 3.1e-244 848.6 691 62.5
Zm00001eb334960 Zea mays HOM05D003955 ORTHO05D004684 7.5e-243 844.0 618 67.8
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 1.9e-241 839.3 615 68.6
Zm00001eb125700 Zea mays HOM05D003955 ORTHO05D004684 5.1e-239 831.2 618 66.7
Os01g0125800 Oryza sativa ssp. japonica HOM05D003955 ORTHO05D004684 8.6e-239 830.5 620 66.0
EL10Ac6g14239 Beta vulgaris HOM05D003955 ORTHO05D004684 1.9e-238 829.3 603 69.5
Sp2g12780 Schrenkiella parvula HOM05D003955 ORTHO05D004684 1.1e-236 823.5 622 69.6
AL5G10290 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 3.4e-235 818.5 622 68.3
Nn4g24112 Nelumbo nucifera HOM05D003955 ORTHO05D004684 3.4e-235 818.5 574 74.6
Aa31LG2G8590 Aethionema arabicum HOM05D003955 ORTHO05D004684 5.8e-235 817.8 654 65.0
CARHR143850 Cardamine hirsuta HOM05D003955 ORTHO05D004684 5.8e-235 817.8 622 67.5
Carub.0005s0030 Capsella rubella HOM05D003955 ORTHO05D004684 1.3e-234 816.6 620 67.9
Thhalv10000821m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 2.2e-234 815.8 622 69.6
C09p30050 Brassica napus HOM05D003955 ORTHO05D004684 3.8e-234 815.1 627 67.5
BolC9t55869H Brassica oleracea HOM05D003955 ORTHO05D004684 3.8e-234 815.1 627 67.5
THA.LOC104823875 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 2.4e-233 812.4 624 67.1
Ah.03g138590 Amaranthus hybridus HOM05D003955 ORTHO05D004684 3.2e-233 812.0 616 68.0
BcaC04g21593 Brassica carinata HOM05D003955 ORTHO05D004684 5.4e-233 811.2 622 67.2
A09p23310 Brassica napus HOM05D003955 ORTHO05D004684 9.2e-233 810.4 627 67.0
BraA09t37932Z Brassica rapa HOM05D003955 ORTHO05D004684 2.1e-232 809.3 627 66.8
AT2G01330 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 3.0e-231 805.4 622 67.4
BcaB07g30749 Brassica carinata HOM05D003955 ORTHO05D004684 1.5e-230 803.1 622 67.0
Actinidia18907 Actinidia chinensis HOM05D003955 ORTHO05D004684 2.2e-226 789.3 617 67.3
Gohir.A01G153300 Gossypium hirsutum HOM05D003955 ORTHO05D004684 2.4e-225 785.8 535 73.1
Gohir.D01G099700 Gossypium hirsutum HOM05D003955 ORTHO05D004684 5.4e-225 784.6 535 72.9
TPR.G12969 Trifolium pratense HOM05D003955 ORTHO05D004684 3.3e-198 695.7 484 76.2
Pp3c3_9960 Physcomitrium patens HOM05D003955 ORTHO05D004684 8.5e-194 681.0 617 55.9
Hund20686 Selenicereus undatus HOM05D003955 ORTHO05D004684 7.9e-192 674.5 489 69.9
Mapoly0025s0096 Marchantia polymorpha HOM05D003955 ORTHO05D004684 3.9e-183 645.6 623 51.0
Actinidia35113 Actinidia chinensis HOM05D003955 ORTHO05D004684 7.7e-179 631.3 426 76.5
Cc04_g06570 Coffea canephora HOM05D003955 ORTHO05D004684 7.4e-174 614.8 385 80.3
AagrBONN_evm.TU.Sc2ySwM_340.157 Anthoceros agrestis HOM05D003955 ORTHO05D004684 9.7e-166 587.8 626 54.3
SMO298G0047 Selaginella moellendorffii HOM05D003955 ORTHO05D004684 2.4e-164 583.2 617 48.6
Thecc.02G279800 Theobroma cacao HOM05D003955 ORTHO05D004684 4.5e-163 578.9 433 69.5
Lalb_Chr06g0165551 Lupinus albus HOM05D003955 ORTHO05D004684 1.4e-151 540.8 434 67.1
HPP92_000152 Vanilla planifolia HOM05D003955 ORTHO05D004684 3.4e-142 509.6 478 57.1
BolC5t33521H Brassica oleracea HOM05D003955 ORTHO05D004684 1.2e-120 438.0 323 66.6
Atru.chr9.1765 Acer truncatum HOM05D003955 ORTHO05D004684 9.3e-116 421.8 292 71.9
CBR_g51409 Chara braunii HOM05D003955 ORTHO05D004684 1.6e-115 421.0 497 53.1
Oeu031790.1 Olea europaea HOM05D003955 ORTHO05D004684 1.0e-114 418.3 362 58.3
SEGI_26510 Sequoiadendron giganteum HOM05D003955 ORTHO05D004684 1.7e-109 401.0 361 58.7
MCO02G121 Micromonas commoda HOM05D003955 ORTHO05D004684 3.7e-96 356.7 655 36.5
Lalb_Chr06g0165541 Lupinus albus HOM05D003955 ORTHO05D004684 1.6e-91 341.3 185 84.3
PRCOL_00004882 Prasinoderma coloniale HOM05D003955 ORTHO05D004684 4.3e-89 333.2 630 39.2
Cc04_g06580 Coffea canephora HOM05D003955 ORTHO05D004684 2.6e-86 323.9 225 73.8
Haze_27019 Corylus avellana HOM05D003955 ORTHO05D004684 1.1e-76 292.0 503 37.8
Zm00001eb337090 Zea mays HOM05D003955 ORTHO05D004684 1.4e-68 265.0 166 84.9
Zm00001eb396840 Zea mays HOM05D003955 ORTHO05D004684 5.5e-68 263.1 166 83.1
Zm00001eb287030 Zea mays HOM05D003955 ORTHO05D004684 1.4e-66 258.5 164 84.8
Zm00001eb076360 Zea mays HOM05D003955 ORTHO05D004684 8.8e-66 255.8 164 84.1
Ca_27465_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 5.2e-58 229.9 131 81.7
TPR.G12747 Trifolium pratense HOM05D003955 ORTHO05D004684 8.8e-58 229.2 130 80.0
Hund20688 Selenicereus undatus HOM05D003955 ORTHO05D004684 6.3e-56 223.0 131 80.9
Atru.chr9.1764 Acer truncatum HOM05D003955 ORTHO05D004684 1.4e-55 221.9 171 70.8
BcaC05g28709 Brassica carinata HOM05D003955 ORTHO05D004684 2.4e-55 221.1 128 79.7
Oeu031786.1 Olea europaea HOM05D003955 ORTHO05D004684 7.0e-47 193.0 131 74.0
RcHm_v2.0_Chr5g0062751 Rosa chinensis HOM05D003955 ORTHO05D004684 9.8e-41 172.6 101 83.2
BcaB03g13114 Brassica carinata HOM05D003955 ORTHO05D030800 3.3e-36 157.5 161 51.6
Oeu013618.1 Olea europaea HOM05D003955 ORTHO05D004684 1.4e-26 125.6 104 62.5
Zm00001eb221950 Zea mays HOM05D003955 ORTHO05D004684 8.3e-24 116.3 95 58.9
Atru.chr5.1031 Acer truncatum HOM05D003955 ORTHO05D030800 8.6e-21 106.3 78 64.1
BcaB07g32970 Brassica carinata HOM05D003955 ORTHO05D004684 1.2e-19 102.4 166 38.0
Zm00001eb369430 Zea mays HOM05D003955 ORTHO05D004684 5.2e-18 97.1 54 79.6
RcHm_v2.0_Chr6g0266701 Rosa chinensis HOM05D003955 ORTHO05D004684 1.2e-17 95.9 73 65.8
RcHm_v2.0_Chr6g0295791 Rosa chinensis HOM05D003955 ORTHO05D004684 5.8e-17 93.6 73 64.4
Actinidia37891 Actinidia chinensis HOM05D003955 ORTHO05D030800 4.9e-16 90.5 220 31.4
Actinidia37893 Actinidia chinensis HOM05D003955 ORTHO05D004684 1.6e-14 85.5 53 73.6
Zm00001eb265330 Zea mays HOM05D003955 ORTHO05D004684 9.5e-12 76.3 61 60.7
FvH4_5g16561 Fragaria vesca HOM05D020439 ORTHO05D035355 2.1e-11 75.1 49 69.4
COL.COLO4_22316 Corchorus olitorius HOM05D003955 ORTHO05D004684 1.5e-09 68.9 49 67.3
Aa31LG3G10470 Aethionema arabicum HOM05D002303 ORTHO05D007639 2.1e-06 58.5 224 19.6
DCAR_030291 Daucus carota HOM05D001610 ORTHO05D001585 6.0e-06 57.0 178 25.8


User provided reference genes

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