Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2363 Fragaria x ananassa HOM05D002453 ORTHO05D008746 2.0e-61 240.4 325 100.0
FAN18G1084 Fragaria x ananassa HOM05D002453 ORTHO05D008746 8.1e-55 218.4 325 89.8
FAN04G2690 Fragaria x ananassa HOM05D002453 ORTHO05D008746 1.8e-54 217.2 323 91.0
FAN18G1604 Fragaria x ananassa HOM05D002453 ORTHO05D008746 1.8e-54 217.2 325 90.5
FvH4_5g12530 Fragaria vesca HOM05D002453 ORTHO05D008746 1.2e-53 214.5 325 89.8
RcHm_v2.0_Chr7g0184831 Rosa chinensis HOM05D002453 ORTHO05D008746 2.1e-42 177.2 325 84.3
FAN13G0647 Fragaria x ananassa HOM05D002453 ORTHO05D008746 1.5e-32 144.4 286 83.6
Haze_09312 Corylus avellana HOM05D002453 ORTHO05D008746 4.5e-21 106.3 81 60.5
Cfa019553 Carpinus fangiana HOM05D002453 ORTHO05D008746 2.2e-20 104.0 81 56.8
Prupe.5G218700 Prunus persica HOM05D002453 ORTHO05D008746 1.9e-19 100.9 76 61.8
QL08p056726 Quercus lobata HOM05D002453 ORTHO05D008746 7.9e-18 95.5 81 54.3
CiPaw.11G159300 Carya illinoinensis HOM05D002453 ORTHO05D008746 1.0e-17 95.1 82 57.3
Cpa.g.sc77.27 Carica papaya HOM05D002453 ORTHO05D008746 1.8e-17 94.4 83 54.2
COL.COLO4_17527 Corchorus olitorius HOM05D000891 ORTHO05D008746 1.8e-17 94.4 82 54.9
CARHR043560 Cardamine hirsuta HOM05D002453 ORTHO05D008746 2.3e-17 94.0 92 50.0
Thhalv10011454m.g Eutrema salsugineum HOM05D002453 ORTHO05D008746 2.3e-17 94.0 92 47.8
A05p18370 Brassica napus HOM05D002753 ORTHO05D003097 6.7e-17 92.4 92 48.9
BraA05t20727Z Brassica rapa HOM05D002753 ORTHO05D003097 6.7e-17 92.4 92 48.9
BcaC01g01383 Brassica carinata HOM05D002453 ORTHO05D008746 2.0e-16 90.9 92 45.7
C03p91440 Brassica napus HOM05D002453 ORTHO05D008746 2.0e-16 90.9 92 45.7
BolC3t21463H Brassica oleracea HOM05D002753 ORTHO05D003097 2.0e-16 90.9 92 45.7
THA.LOC104810436 Tarenaya hassleriana HOM05D002453 ORTHO05D008746 2.0e-16 90.9 92 47.8
Cc05_g10980 Coffea canephora HOM05D002453 ORTHO05D008746 2.6e-16 90.5 122 54.9
A08p01630 Brassica napus HOM05D002453 ORTHO05D008746 2.2e-15 87.4 91 45.1
BraA08t32216Z Brassica rapa HOM05D002453 ORTHO05D008746 2.2e-15 87.4 91 45.1
Lalb_Chr01g0006871 Lupinus albus HOM05D002453 ORTHO05D008746 2.2e-15 87.4 73 56.2
ClCG11G017080 Citrullus lanatus HOM05D002453 ORTHO05D008746 4.8e-15 86.3 81 51.9
PGR031G2661 Punica granatum HOM05D002453 ORTHO05D008746 6.3e-15 85.9 82 53.7
TWI38G0410 Tripterygium wilfordii HOM05D002453 ORTHO05D008746 6.3e-15 85.9 82 51.2
Ciclev10023847m.g Citrus clementina HOM05D002453 ORTHO05D008746 8.2e-15 85.5 122 54.9
Sc03g0010580 Simmondsia chinensis HOM05D002453 ORTHO05D008746 8.2e-15 85.5 81 44.4
Atru.ctg752_3.82 Acer truncatum HOM05D002453 ORTHO05D008746 1.1e-14 85.1 86 46.5
CsaV3_4G032750 Cucumis sativus L. HOM05D002453 ORTHO05D008746 1.4e-14 84.7 81 51.9
SalBow8G2866 Salvia bowleyana HOM05D002453 ORTHO05D008746 1.4e-14 84.7 120 53.3
CSS0010333 Camellia sinensis var. sinensis HOM05D002453 ORTHO05D008746 2.4e-14 84.0 79 50.6
arahy.Tifrunner.gnm1.ann1.QIT2C2 Arachis hypogaea HOM05D002453 ORTHO05D008746 3.1e-14 83.6 115 40.0
Rhsim04G0027000 Rhododendron simsii HOM05D002453 ORTHO05D008746 4.1e-14 83.2 79 49.4
Glyma.06G227700 Glycine max HOM05D002453 ORTHO05D008746 5.3e-14 82.8 111 43.2
Phvul.011G165650 Phaseolus vulgaris HOM05D002453 ORTHO05D008746 7.0e-14 82.4 123 36.6
Thecc.07G118900 Theobroma cacao HOM05D002453 ORTHO05D008746 7.0e-14 82.4 83 48.2
EL10Ac7g16008 Beta vulgaris HOM05D002453 ORTHO05D008746 1.6e-13 81.3 83 44.6
Thecc.07G118600 Theobroma cacao HOM05D002453 ORTHO05D008746 1.6e-13 81.3 83 47.0
VMungo1127G1146 Vigna mungo HOM05D002453 ORTHO05D008746 1.6e-13 81.3 121 37.2
Nitab4.5_0003706g0010 Nicotiana tabacum HOM05D002453 ORTHO05D008746 5.9e-13 79.3 77 48.1
Actinidia18805 Actinidia chinensis HOM05D002453 ORTHO05D008746 7.7e-13 79.0 79 45.6
Solyc12g014330.1 Solanum lycopersicum HOM05D002453 ORTHO05D008746 1.3e-12 78.2 77 46.8
Sopen12g006110 Solanum pennellii HOM05D002453 ORTHO05D008746 1.7e-12 77.8 77 46.8
SGA_v2.0_scaffold181G39749 Striga asiatica HOM05D002453 ORTHO05D008746 1.7e-12 77.8 77 49.4
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 3.8e-12 76.6 117 52.1
Manes.15G095900 Manihot esculenta HOM05D002453 ORTHO05D008746 5.0e-12 76.3 122 36.9
AUR62019589 Chenopodium quinoa HOM05D002453 ORTHO05D008746 8.5e-12 75.5 122 48.4
AUR62037559 Chenopodium quinoa HOM05D002453 ORTHO05D008746 8.5e-12 75.5 83 42.2
Duzib213G0722 Durio zibethinus HOM05D002453 ORTHO05D008746 1.5e-11 74.7 83 44.6
Zm00001eb317730 Zea mays HOM05D002453 ORTHO05D008746 3.2e-11 73.6 85 44.7
Dinv18370 Davidia involucrata HOM05D002453 ORTHO05D008746 4.2e-11 73.2 49 63.3
SHI05938 Sapria himalayana HOM05D002453 ORTHO05D008746 4.2e-11 73.2 75 45.3
CAN.G292.15 Capsicum annuum HOM05D002453 ORTHO05D008746 5.5e-11 72.8 120 45.0
Gohir.D13G154100 Gossypium hirsutum HOM05D002453 ORTHO05D008746 5.5e-11 72.8 90 41.1
Gorai.013G174100 Gossypium raimondii HOM05D002453 ORTHO05D008746 5.5e-11 72.8 90 41.1
Nitab4.5_0000035g0220 Nicotiana tabacum HOM05D002453 ORTHO05D008746 5.5e-11 72.8 77 44.2
Ah.05g168090 Amaranthus hybridus HOM05D002453 ORTHO05D008746 7.2e-11 72.4 83 39.8
Oeu059257.1 Olea europaea HOM05D002453 ORTHO05D008746 1.2e-10 71.6 78 46.2
Gohir.A13G149800 Gossypium hirsutum HOM05D000891 ORTHO05D008746 1.6e-10 71.2 90 41.1
Migut.M00705 Erythranthe guttata HOM05D002453 ORTHO05D008746 8.0e-10 68.9 49 61.2
DCAR_019601 Daucus carota HOM05D002453 ORTHO05D008746 1.4e-09 68.2 80 42.5
Psat4g140040 Pisum sativum HOM05D002453 ORTHO05D008746 1.4e-09 68.2 115 33.9
Potri.011G108500 Populus trichocarpa HOM05D002453 ORTHO05D008746 6.7e-09 65.9 83 38.6
RhsimUnG0012600 Rhododendron simsii HOM05D002453 ORTHO05D008746 6.7e-09 65.9 63 47.6
PGSC0003DMG400015338 Solanum tuberosum HOM05D002453 ORTHO05D008746 1.2e-08 65.1 79 38.0
Sed0018684 Sechium edule HOM05D002453 ORTHO05D008746 4.4e-08 63.2 84 41.7
MBI06_g18689_MAGBIO Magnolia biondii HOM05D002453 ORTHO05D008746 5.7e-08 62.8 83 38.6
Medtr8g058400 Medicago truncatula HOM05D002453 ORTHO05D008746 5.7e-08 62.8 68 42.6
Aa31LG10G1800 Aethionema arabicum HOM05D002453 ORTHO05D008746 7.5e-08 62.4 92 35.9
Ca_26205_v3 Cicer arietinum L. HOM05D002453 ORTHO05D008746 7.5e-08 62.4 68 44.1
Carub.0001s4251 Capsella rubella HOM05D002453 ORTHO05D008746 1.3e-07 61.6 92 34.8
Os05g0207200 Oryza sativa ssp. japonica HOM05D002453 ORTHO05D008746 1.3e-07 61.6 63 46.0
Nn1g01599 Nelumbo nucifera HOM05D002453 ORTHO05D008746 3.7e-07 60.1 61 49.2
Nn6g34498 Nelumbo nucifera HOM05D002453 ORTHO05D008746 4.8e-07 59.7 48 52.1
Peaxi162Scf00000g00692 Petunia axillaris HOM05D002453 ORTHO05D008746 4.8e-07 59.7 77 40.3
TAR626G1192 Trochodendron aralioides HOM05D002453 ORTHO05D008746 4.8e-07 59.7 48 52.1
Lj8P147T41 Lonicera japonica HOM05D002453 ORTHO05D008746 6.3e-07 59.3 90 34.4
Aa31LG1G11380 Aethionema arabicum HOM05D000104 ORTHO05D009920 8.2e-07 58.9 64 45.3
HanXRQChr12g0375311 Helianthus annuus HOM05D005622 ORTHO05D002854 8.2e-07 58.9 58 48.3
BcaB04g17087 Brassica carinata HOM05D002453 ORTHO05D008746 1.1e-06 58.5 74 40.5
Sabra11G0096300 Salix brachista HOM05D000891 ORTHO05D008746 1.4e-06 58.2 53 47.2
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 1.8e-06 57.8 78 35.9
Lsat_1_v5_gn_3_56000 Lactuca sativa HOM05D005622 ORTHO05D002854 2.4e-06 57.4 77 37.7
Eucgr.F03279 Eucalyptus grandis HOM05D002453 ORTHO05D008746 3.1e-06 57.0 81 35.8
C06p14820 Brassica napus HOM05D002453 ORTHO05D008746 4.1e-06 56.6 105 34.3
BolC6t36661H Brassica oleracea HOM05D002453 ORTHO05D008746 4.1e-06 56.6 105 34.3
QL01p002440 Quercus lobata HOM05D006556 ORTHO05D008146 5.3e-06 56.2 65 44.6
AT1G53330 Arabidopsis thaliana HOM05D002453 ORTHO05D008746 7.0e-06 55.8 48 50.0
CDE06G1744 Ceratophyllum demersum HOM05D000591 ORTHO05D000579 7.0e-06 55.8 82 32.9
Ah.06g194230 Amaranthus hybridus HOM05D005622 ORTHO05D002854 9.1e-06 55.5 62 43.5
Ah.16g102020 Amaranthus hybridus HOM05D005622 ORTHO05D002854 9.1e-06 55.5 62 43.5
Sp1g39910 Schrenkiella parvula HOM05D002453 ORTHO05D008746 9.1e-06 55.5 45 53.3


User provided reference genes

Program Settings