Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G2131 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.7e-99 365.9 178 100.0
FvH4_4g11950 Fragaria vesca HOM05D003334 ORTHO05D004076 3.6e-28 129.0 67 88.1
FAN07G2734 Fragaria x ananassa HOM05D003334 ORTHO05D004076 3.6e-28 129.0 67 88.1
FAN12G4063 Fragaria x ananassa HOM05D003334 ORTHO05D004076 3.6e-28 129.0 67 88.1
RcHm_v2.0_Chr7g0223011 Rosa chinensis HOM05D003334 ORTHO05D004076 4.6e-28 128.6 67 88.1
FAN17G0794 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.3e-27 127.1 67 86.6
FAN22G0185 Fragaria x ananassa HOM05D003334 ORTHO05D004076 8.8e-27 124.4 67 85.1
CSS0036286 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 7.4e-26 121.3 64 82.8
RcHm_v2.0_Chr3g0493481 Rosa chinensis HOM05D003334 ORTHO05D004076 1.3e-25 120.6 67 82.1
CSS0022391 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 1.7e-25 120.2 64 81.2
Dinv27617 Davidia involucrata HOM05D003334 ORTHO05D004076 2.2e-25 119.8 64 84.4
Dinv04743 Davidia involucrata HOM05D003334 ORTHO05D004076 3.7e-25 119.0 64 82.8
GSVIVG01020576001 Vitis vinifera HOM05D003334 ORTHO05D004076 3.7e-25 119.0 64 81.2
Cpa.g.sc1142.2 Carica papaya HOM05D003334 ORTHO05D004076 4.8e-25 118.6 64 81.2
Duzib170G0367 Durio zibethinus HOM05D003334 ORTHO05D004076 4.8e-25 118.6 64 81.2
MD12G1255800 Malus domestica HOM05D003334 ORTHO05D004076 4.8e-25 118.6 64 82.8
Rhsim12G0003500 Rhododendron simsii HOM05D003334 ORTHO05D004076 4.8e-25 118.6 64 84.4
Thecc.09G264900 Theobroma cacao HOM05D003334 ORTHO05D004076 4.8e-25 118.6 64 81.2
CANSAT54G0453 Cannabis sativa HOM05D003334 ORTHO05D004076 8.2e-25 117.9 64 81.2
THA.LOC104821663 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 8.2e-25 117.9 64 79.7
Actinidia29400 Actinidia chinensis HOM05D003334 ORTHO05D004076 1.1e-24 117.5 64 81.2
BcaC01g04366 Brassica carinata HOM05D003334 ORTHO05D004076 1.1e-24 117.5 64 81.2
C03p40860 Brassica napus HOM05D003334 ORTHO05D004076 1.1e-24 117.5 64 81.2
BolC3t16357H Brassica oleracea HOM05D003334 ORTHO05D004076 1.1e-24 117.5 64 81.2
BolC3t16365H Brassica oleracea HOM05D003334 ORTHO05D004076 1.1e-24 117.5 64 81.2
Sp3g03440 Schrenkiella parvula HOM05D003334 ORTHO05D004076 1.1e-24 117.5 64 82.8
THA.LOC104802839 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 1.1e-24 117.5 64 79.7
A03p33670 Brassica napus HOM05D003334 ORTHO05D004076 1.4e-24 117.1 64 81.2
Manes.12G077800 Manihot esculenta HOM05D003334 ORTHO05D004076 1.4e-24 117.1 64 81.2
COL.COLO4_25317 Corchorus olitorius HOM05D003334 ORTHO05D004076 1.8e-24 116.7 64 79.7
Hund21808 Selenicereus undatus HOM05D003334 ORTHO05D004076 1.8e-24 116.7 64 79.7
AT3G04600 Arabidopsis thaliana HOM05D003334 ORTHO05D004076 2.4e-24 116.3 64 81.2
AUR62005286 Chenopodium quinoa HOM05D003334 ORTHO05D004076 2.4e-24 116.3 64 82.8
AUR62009179 Chenopodium quinoa HOM05D003334 ORTHO05D004076 2.4e-24 116.3 64 82.8
Prupe.7G057000 Prunus persica HOM05D003334 ORTHO05D004076 2.4e-24 116.3 64 82.8
Prupe.7G057800 Prunus persica HOM05D003334 ORTHO05D004076 2.4e-24 116.3 64 82.8
BraA03t12541Z Brassica rapa HOM05D003334 ORTHO05D004076 3.1e-24 115.9 64 79.7
Duzib168G1687 Durio zibethinus HOM05D003334 ORTHO05D004076 3.1e-24 115.9 64 79.7
Gohir.A09G104500 Gossypium hirsutum HOM05D003334 ORTHO05D004076 3.1e-24 115.9 64 78.1
Gohir.D09G101200 Gossypium hirsutum HOM05D003334 ORTHO05D004076 3.1e-24 115.9 64 78.1
Gorai.006G118600 Gossypium raimondii HOM05D003334 ORTHO05D004076 3.1e-24 115.9 64 78.1
Lj7A725T58 Lonicera japonica HOM05D003334 ORTHO05D004076 3.1e-24 115.9 64 81.2
Sed0023632 Sechium edule HOM05D003334 ORTHO05D004076 3.1e-24 115.9 64 79.7
CAN.G195.16 Capsicum annuum HOM05D003334 ORTHO05D004076 4.1e-24 115.5 64 81.2
Nn1g02302 Nelumbo nucifera HOM05D003334 ORTHO05D004076 4.1e-24 115.5 64 81.2
Sed0014785 Sechium edule HOM05D003334 ORTHO05D004076 4.1e-24 115.5 64 79.7
Sc06g0005180 Simmondsia chinensis HOM05D003334 ORTHO05D004076 5.3e-24 115.2 64 79.7
TAR365G0738 Trochodendron aralioides HOM05D003334 ORTHO05D004076 5.3e-24 115.2 64 81.2
vmacro00932 Vaccinium macrocarpon HOM05D003334 ORTHO05D004076 5.3e-24 115.2 64 82.8
AL3G14620 Arabidopsis lyrata HOM05D003334 ORTHO05D004076 6.9e-24 114.8 64 79.7
BcaB04g19317 Brassica carinata HOM05D003334 ORTHO05D004076 6.9e-24 114.8 64 79.7
Carub.0003s0375 Capsella rubella HOM05D003334 ORTHO05D004076 6.9e-24 114.8 64 79.7
Thhalv10020864m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 6.9e-24 114.8 64 79.7
CARHR078780 Cardamine hirsuta HOM05D003334 ORTHO05D004076 9.1e-24 114.4 64 79.7
Potri.009G159300 Populus trichocarpa HOM05D003334 ORTHO05D004076 9.1e-24 114.4 64 78.1
Sabra09G0124600 Salix brachista HOM05D003334 ORTHO05D004076 9.1e-24 114.4 64 78.1
MD04G1236500 Malus domestica HOM05D003334 ORTHO05D004076 1.2e-23 114.0 64 79.7
BcaB03g16657 Brassica carinata HOM05D003334 ORTHO05D004076 2.0e-23 113.2 64 76.6
MELO3C016671.2 Cucumis melo HOM05D003334 ORTHO05D004076 2.0e-23 113.2 64 78.1
SalBow8G4285 Salvia bowleyana HOM05D003334 ORTHO05D004076 2.0e-23 113.2 64 76.6
Ciclev10008518m.g Citrus clementina HOM05D003334 ORTHO05D004076 2.6e-23 112.8 66 75.8
CsaV3_5G014480 Cucumis sativus L. HOM05D003334 ORTHO05D004076 2.6e-23 112.8 64 78.1
QL01p002114 Quercus lobata HOM05D003334 ORTHO05D004076 2.6e-23 112.8 64 81.2
TAR636G1778 Trochodendron aralioides HOM05D003334 ORTHO05D004076 2.6e-23 112.8 64 76.6
MSTRG.11832 Avicennia marina HOM05D003334 ORTHO05D004076 3.4e-23 112.5 64 76.6
EL10Ac4g09810 Beta vulgaris HOM05D003334 ORTHO05D004076 4.5e-23 112.1 64 79.7
PGR119G1638 Punica granatum HOM05D003334 ORTHO05D004076 4.5e-23 112.1 61 82.0
BcaC09g47791 Brassica carinata HOM05D003334 ORTHO05D004076 5.9e-23 111.7 64 78.1
A01p40810 Brassica napus HOM05D003334 ORTHO05D004076 5.9e-23 111.7 64 78.1
BNapus_Darmor_BZH_scaffold_78p00900 Brassica napus HOM05D003334 ORTHO05D004076 5.9e-23 111.7 64 78.1
BolC1t05738H Brassica oleracea HOM05D003334 ORTHO05D004076 5.9e-23 111.7 64 78.1
BraA01t04517Z Brassica rapa HOM05D003334 ORTHO05D004076 5.9e-23 111.7 64 78.1
ClCG09G011880 Citrullus lanatus HOM05D003334 ORTHO05D004076 5.9e-23 111.7 64 76.6
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 5.9e-23 111.7 61 80.3
Migut.E01397 Erythranthe guttata HOM05D003334 ORTHO05D004076 5.9e-23 111.7 64 75.0
HanXRQChr17g0559071 Helianthus annuus HOM05D003334 ORTHO05D004076 7.7e-23 111.3 61 80.3
Lalb_Chr21g0312861 Lupinus albus HOM05D003334 ORTHO05D004076 7.7e-23 111.3 64 76.6
Eucgr.B01376 Eucalyptus grandis HOM05D003334 ORTHO05D004076 1.0e-22 110.9 61 82.0
Eucgr.B01628 Eucalyptus grandis HOM05D003334 ORTHO05D004076 1.0e-22 110.9 61 82.0
MBI07_g42069_MAGBIO Magnolia biondii HOM05D003334 ORTHO05D004076 1.0e-22 110.9 64 76.6
QL06p038393 Quercus lobata HOM05D003334 ORTHO05D004076 1.0e-22 110.9 64 78.1
Oeu044972.2 Olea europaea HOM05D003334 ORTHO05D004076 1.7e-22 110.2 61 80.3
Solyc08g074410.4 Solanum lycopersicum HOM05D003334 ORTHO05D004076 1.7e-22 110.2 64 75.0
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 1.7e-22 110.2 64 75.0
PGSC0003DMG400029565 Solanum tuberosum HOM05D003334 ORTHO05D004076 1.7e-22 110.2 64 75.0
HPP92_011708 Vanilla planifolia HOM05D003334 ORTHO05D004076 1.7e-22 110.2 64 75.0
Aa31LG5G20570 Aethionema arabicum HOM05D003334 ORTHO05D004076 2.2e-22 109.8 64 75.0
BcaB06g25549 Brassica carinata HOM05D003334 ORTHO05D004076 2.2e-22 109.8 64 78.1
Atru.chr7.238 Acer truncatum HOM05D003334 ORTHO05D004076 2.9e-22 109.4 61 78.7
ATR0743G002 Amborella trichopoda HOM05D003334 ORTHO05D004076 2.9e-22 109.4 64 75.0
Haze_07729 Corylus avellana HOM05D003334 ORTHO05D004076 2.9e-22 109.4 64 76.6
Nitab4.5_0006136g0020 Nicotiana tabacum HOM05D003334 ORTHO05D004076 2.9e-22 109.4 64 75.0
A07p01960 Brassica napus HOM05D003334 ORTHO05D004076 3.8e-22 109.0 64 71.9
BraA07t27995Z Brassica rapa HOM05D003334 ORTHO05D004076 3.8e-22 109.0 64 71.9
Cfa013451 Carpinus fangiana HOM05D003334 ORTHO05D004076 3.8e-22 109.0 64 75.0
ECA238G1984 Erigeron canadensis HOM05D003334 ORTHO05D004076 3.8e-22 109.0 60 80.0
CARHR060040 Cardamine hirsuta HOM05D003334 ORTHO05D004076 5.0e-22 108.6 64 76.6
Ca_14800_v3 Cicer arietinum L. HOM05D003334 ORTHO05D004076 5.0e-22 108.6 64 76.6
Oeu028126.2 Olea europaea HOM05D003334 ORTHO05D004076 5.0e-22 108.6 61 78.7
TPR.G5320 Trifolium pratense HOM05D003334 ORTHO05D004076 5.0e-22 108.6 64 73.4
Ah.15g091810 Amaranthus hybridus HOM05D003334 ORTHO05D004076 6.5e-22 108.2 64 73.4
Thhalv10003092m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 6.5e-22 108.2 61 78.7
Hma1.2p1_0123F.1_g058080 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 6.5e-22 108.2 64 75.0
Nitab4.5_0009273g0030 Nicotiana tabacum HOM05D003334 ORTHO05D004076 6.5e-22 108.2 64 73.4
unitig_32.g11639 Utricularia gibba HOM05D003334 ORTHO05D004076 8.5e-22 107.8 64 71.9
BcaC09g48536 Brassica carinata HOM05D003334 ORTHO05D004076 1.1e-21 107.5 62 79.0
CiPaw.07G196900 Carya illinoinensis HOM05D003334 ORTHO05D004076 1.1e-21 107.5 64 76.6
SHI16564 Sapria himalayana HOM05D003334 ORTHO05D004076 1.4e-21 107.1 64 75.0
BcaB04g21362 Brassica carinata HOM05D003334 ORTHO05D004076 1.9e-21 106.7 64 75.0
CDE08G0778 Ceratophyllum demersum HOM05D003334 ORTHO05D004076 2.5e-21 106.3 62 74.2
Lj3g0011249 Lotus japonicus HOM05D003334 ORTHO05D004076 2.5e-21 106.3 64 71.9
Sp6g11650 Schrenkiella parvula HOM05D003334 ORTHO05D004076 2.5e-21 106.3 72 72.2
Medtr8g007305 Medicago truncatula HOM05D003334 ORTHO05D004076 4.2e-21 105.5 62 75.8
Lsat_1_v5_gn_2_16301 Lactuca sativa HOM05D003334 ORTHO05D004076 5.5e-21 105.1 61 75.4
Aqoxy7G02117 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 7.2e-21 104.8 62 72.6
Hma1.2p1_1064F.1_g253620 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 7.2e-21 104.8 64 71.9
TWI34G0756 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 9.4e-21 104.4 62 71.0
Aqoxy7G03650 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 1.2e-20 104.0 62 72.6
Thhalv10004344m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 1.2e-20 104.0 64 75.0
Oeu028097.1 Olea europaea HOM05D003334 ORTHO05D004076 1.2e-20 104.0 64 70.3
PSO063G6945 Papaver somniferum HOM05D003334 ORTHO05D004076 1.2e-20 104.0 61 77.0
Zm00001eb054210 Zea mays HOM05D003334 ORTHO05D004076 1.2e-20 104.0 61 72.1
arahy.Tifrunner.gnm1.ann1.GB3JX0 Arachis hypogaea HOM05D003334 ORTHO05D004076 1.6e-20 103.6 64 73.4
arahy.Tifrunner.gnm1.ann1.L2SHRD Arachis hypogaea HOM05D003334 ORTHO05D004076 1.6e-20 103.6 64 73.4
Psat2g164840 Pisum sativum HOM05D003334 ORTHO05D004076 1.6e-20 103.6 64 73.4
Psat4g222840 Pisum sativum HOM05D003334 ORTHO05D004076 2.1e-20 103.2 64 71.9
PSO170G1996 Papaver somniferum HOM05D003334 ORTHO05D004076 2.7e-20 102.8 61 77.0
HanXRQChr11g0333651 Helianthus annuus HOM05D003334 ORTHO05D004076 3.6e-20 102.4 61 77.0
Phvul.010G046300 Phaseolus vulgaris HOM05D003334 ORTHO05D004076 3.6e-20 102.4 61 73.8
TWI15G0949 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 3.6e-20 102.4 63 69.8
Mapoly0053s0020 Marchantia polymorpha HOM05D003334 ORTHO05D004076 4.7e-20 102.1 64 70.3
Nitab4.5_0003036g0010 Nicotiana tabacum HOM05D003334 ORTHO05D004076 4.7e-20 102.1 64 70.3
Os12g0540900 Oryza sativa ssp. japonica HOM05D003334 ORTHO05D004076 6.1e-20 101.7 61 72.1
VMungo0331G0230 Vigna mungo HOM05D003334 ORTHO05D004076 7.9e-20 101.3 61 73.8
Glyma.03G108900 Glycine max HOM05D003334 ORTHO05D004076 1.0e-19 100.9 61 72.1
Glyma.13G008200 Glycine max HOM05D003334 ORTHO05D004076 1.1e-18 97.4 61 70.5
Aa31LG5G15020 Aethionema arabicum HOM05D003334 ORTHO05D004076 1.5e-18 97.1 77 62.3
Atru.chr5.3183 Acer truncatum HOM05D003334 ORTHO05D004076 2.6e-18 96.3 67 64.2
CBR_g37637 Chara braunii HOM05D003334 ORTHO05D004076 7.4e-18 94.7 61 65.6
BolC1t05722H Brassica oleracea HOM05D003334 ORTHO05D004076 1.7e-17 93.6 61 68.9
BcaC09g47814 Brassica carinata HOM05D003334 ORTHO05D004076 3.7e-17 92.4 61 67.2
Pp3c2_27540 Physcomitrium patens HOM05D003334 ORTHO05D004076 4.8e-17 92.0 64 59.4
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 3.1e-16 89.4 61 65.6
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 3.1e-16 89.4 61 65.6
BcaB04g21381 Brassica carinata HOM05D003334 ORTHO05D004076 6.9e-16 88.2 64 62.5
SMO143G0103 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 1.5e-15 87.0 61 60.7
PRCOL_00004976 Prasinoderma coloniale HOM05D003334 ORTHO05D004076 2.0e-15 86.7 107 43.9
Dinv13219 Davidia involucrata HOM05D000386 ORTHO05D000406 5.9e-15 85.1 68 63.2
C07p04090 Brassica napus HOM05D003334 ORTHO05D004076 1.7e-14 83.6 53 69.8
Dinv11744 Davidia involucrata HOM05D003334 ORTHO05D022509 3.8e-14 82.4 49 73.5
MCO14G308 Micromonas commoda HOM05D003334 ORTHO05D004076 5.0e-14 82.0 105 41.9
Cre12.g522350 Chlamydomonas reinhardtii HOM05D003334 ORTHO05D004076 6.5e-14 81.6 58 56.9
BcaC01g04365 Brassica carinata HOM05D003334 ORTHO05D004076 8.5e-14 81.3 64 60.9
SMO352G0088 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 1.9e-13 80.1 61 54.1
Hund21807 Selenicereus undatus HOM05D003334 ORTHO05D022509 1.9e-13 80.1 45 77.8
Peaxi162Scf00020g00242 Petunia axillaris HOM05D003334 ORTHO05D004076 5.7e-10 68.6 80 41.2
FAN01G1786 Fragaria x ananassa HOM05D003334 ORTHO05D004076 2.6e-07 59.7 30 86.7
Haze_26816 Corylus avellana HOM05D003334 ORTHO05D004076 1.3e-06 57.4 108 32.4
FAN26G2167 Fragaria x ananassa HOM05D001262 ORTHO05D001114 1.7e-06 57.0 65 47.7
Prupe.7G238500 Prunus persica HOM05D001262 ORTHO05D001114 1.7e-06 57.0 63 49.2
FAN19G0437 Fragaria x ananassa HOM05D001262 ORTHO05D001114 2.2e-06 56.6 64 48.4
FAN23G1170 Fragaria x ananassa HOM05D001262 ORTHO05D001114 2.2e-06 56.6 64 48.4
Sed0022912 Sechium edule HOM05D003334 ORTHO05D022509 8.5e-06 54.7 46 56.5


User provided reference genes

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