Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 0.0e+00 1436.8 756 100.0
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 0.0e+00 1214.9 756 88.0
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 0.0e+00 1177.2 756 82.0
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 0.0e+00 1129.0 779 80.0
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.8e-302 1042.3 756 77.4
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 3.9e-302 1041.2 756 74.3
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 6.0e-234 814.7 756 59.9
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 3.3e-232 808.9 757 59.4
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 2.1e-226 789.6 756 61.4
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 7.8e-210 734.6 755 57.1
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 1.5e-205 720.3 755 57.0
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 7.9e-202 708.0 757 52.6
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 2.6e-197 693.0 757 52.0
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 1.1e-195 687.6 758 53.0
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 3.5e-194 682.6 754 52.8
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 6.7e-193 678.3 757 49.0
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.9e-192 676.8 754 52.5
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 2.5e-192 676.4 757 53.4
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.4e-187 660.6 755 54.0
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 2.5e-187 659.8 758 52.1
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 9.3e-187 657.9 755 54.2
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 1.2e-186 657.5 761 48.9
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.1e-184 651.0 755 53.5
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 3.3e-184 649.4 755 53.2
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 5.7e-184 648.7 755 53.5
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 2.8e-183 646.4 755 53.6
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 4.8e-183 645.6 757 48.6
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 2.4e-182 643.3 760 48.9
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.2e-181 641.0 766 51.4
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 1.7e-180 637.1 755 52.6
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 6.5e-180 635.2 764 49.9
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 2.5e-179 633.3 822 44.9
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 4.2e-179 632.5 763 51.0
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 3.0e-177 626.3 754 51.1
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.5e-176 624.0 761 49.9
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 2.5e-176 623.2 764 47.5
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 4.3e-176 622.5 754 50.3
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 2.2e-175 620.2 760 48.0
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 6.3e-175 618.6 756 49.9
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 1.1e-174 617.8 756 49.9
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.1e-174 617.8 761 48.1
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.5e-173 614.0 759 49.5
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 3.4e-173 612.8 761 49.9
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 4.5e-173 612.5 754 49.9
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 7.7e-173 611.7 773 45.5
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 1.2e-170 604.4 761 48.4
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 3.0e-169 599.7 774 48.6
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 4.4e-168 595.9 754 48.5
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 1.3e-167 594.3 757 48.1
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 1.4e-166 590.9 784 46.9
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 1.7e-164 583.9 754 43.9
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 2.9e-164 583.2 760 48.9
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 3.8e-164 582.8 721 49.8
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 8.5e-164 581.6 757 47.0
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 8.5e-164 581.6 756 45.0
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 1.5e-163 580.9 754 48.5
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 3.2e-163 579.7 763 46.5
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 4.2e-163 579.3 757 47.0
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 3.0e-161 573.2 757 47.3
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 1.1e-160 571.2 757 48.6
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 2.6e-160 570.1 789 45.6
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 1.3e-159 567.8 763 46.9
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 3.7e-159 566.2 759 47.7
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.6e-157 560.8 756 46.7
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 8.0e-154 548.5 756 48.7
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 4.0e-153 546.2 757 47.2
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 5.2e-153 545.8 760 46.4
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 1.5e-152 544.3 756 47.5
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 2.6e-152 543.5 793 43.8
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 2.6e-152 543.5 756 46.7
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 2.6e-152 543.5 765 43.4
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 5.7e-152 542.3 757 45.7
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 7.5e-152 542.0 757 46.4
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 2.8e-151 540.0 757 45.3
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 4.8e-151 539.3 685 50.7
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 1.8e-150 537.3 761 45.6
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 3.1e-150 536.6 758 46.2
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 4.1e-150 536.2 573 55.5
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 5.4e-150 535.8 756 46.3
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 7.0e-150 535.4 756 45.6
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 2.0e-149 533.9 756 47.0
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 3.5e-149 533.1 761 47.0
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.7e-148 530.8 707 48.8
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 2.2e-148 530.4 757 45.8
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 6.5e-148 528.9 757 45.6
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 8.5e-148 528.5 757 43.7
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.1e-147 528.1 756 44.7
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 1.1e-147 528.1 754 46.3
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 2.5e-147 526.9 759 47.3
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 4.2e-147 526.2 759 45.1
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 2.3e-145 520.4 756 44.3
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 5.2e-145 519.2 756 46.4
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 2.6e-144 516.9 747 45.5
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 1.7e-143 514.2 686 48.1
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.8e-142 510.8 759 45.3
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 1.6e-138 497.7 760 42.9
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 4.0e-137 493.0 767 43.8
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 4.0e-137 493.0 765 41.2
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 7.8e-133 478.8 763 41.5
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 1.9e-131 474.2 761 44.4
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 4.3e-131 473.0 753 39.6
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-130 471.5 524 50.2
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 8.9e-129 465.3 686 45.2
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 3.4e-128 463.4 532 47.0
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 1.7e-127 461.1 764 39.9
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 1.2e-125 454.9 782 42.5
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 6.6e-124 449.1 515 54.6
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 1.1e-123 448.4 762 38.1
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 6.2e-122 442.6 763 42.7
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.8e-121 441.0 782 40.4
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.2e-119 434.1 758 36.4
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.4e-118 429.5 764 41.1
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 1.9e-115 421.0 530 50.8
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 8.1e-114 415.6 629 42.9
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.1e-108 396.4 569 45.5
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 4.3e-99 366.7 571 44.7
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 7.3e-99 365.9 684 37.1
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 4.9e-95 353.2 557 42.7
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 3.3e-91 340.5 536 40.5
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 1.4e-86 325.1 316 55.1
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-82 310.8 529 38.8
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 1.0e-79 302.4 360 46.9
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-77 295.0 534 36.3
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 5.3e-73 280.0 749 36.4
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.1e-69 268.1 430 40.7
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 7.4e-67 259.6 313 54.0
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 1.0e-63 249.2 479 38.6
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 2.0e-59 235.0 250 52.8
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 3.8e-55 220.7 198 57.1
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 4.4e-51 207.2 309 47.9
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 5.3e-49 200.3 601 29.6
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 9.7e-43 179.5 730 26.0
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 2.2e-42 178.3 123 70.7
SalBow4G1793 Salvia bowleyana HOM05D003682 ORTHO05D004224 3.7e-42 177.6 193 52.8
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 1.6e-40 172.2 195 63.1
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 2.7e-40 171.4 627 27.1
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 2.5e-38 164.9 167 52.1
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 9.8e-35 152.9 144 61.1
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 9.8e-35 152.9 590 25.8
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.0e-31 142.9 199 44.7
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 7.2e-30 136.7 141 53.9
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 1.6e-29 135.6 138 56.5
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 2.1e-29 135.2 158 45.6
BcaNung05639 Brassica carinata HOM05D006679 ORTHO05D008461 2.7e-29 134.8 135 50.4
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 4.7e-29 134.0 121 56.2
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 5.2e-28 130.6 126 53.2
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 5.9e-24 117.1 166 41.6
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 1.0e-23 116.3 110 56.4
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 1.9e-22 112.1 263 33.1
Aqoxy2G00859 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 2.5e-22 111.7 125 45.6
Lalb_Chr04g0252781 Lupinus albus HOM05D003682 ORTHO05D004224 5.6e-22 110.5 75 72.0
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.8e-21 108.2 98 58.2
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 6.1e-21 107.1 122 45.9
CSS0026243 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.9e-20 103.2 105 49.5
CSS0040590 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 8.9e-20 103.2 105 49.5
CSS0014234 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-19 102.8 105 48.6
CSS0003380 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.8e-19 99.8 100 49.0
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.9e-18 97.4 98 56.1
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 8.3e-18 96.7 342 29.5
CSS0042448 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.4e-17 95.9 105 46.7
CSS0000677 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.4e-17 94.0 105 48.6
CSS0006921 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.2e-17 93.2 105 45.7
CSS0029231 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.7e-16 91.7 105 47.6
Prupe.1G572700 Prunus persica HOM05D003682 ORTHO05D004224 3.9e-15 87.8 69 62.3
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 6.6e-15 87.0 65 69.2
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.1e-14 86.3 137 36.5
arahy.Tifrunner.gnm1.ann1.R6K80C Arachis hypogaea HOM05D003682 ORTHO05D004224 7.3e-14 83.6 143 39.2
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 7.3e-14 83.6 65 66.2
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.5e-14 83.2 65 67.7
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.5e-14 83.2 65 67.7
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-13 82.8 65 66.2
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.6e-13 82.4 65 66.2
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 2.1e-13 82.0 71 56.3
arahy.Tifrunner.gnm1.ann1.H7L4UV Arachis hypogaea HOM05D003682 ORTHO05D004224 8.0e-13 80.1 139 38.8
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 2.3e-12 78.6 318 25.8
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.2e-11 76.3 215 30.2
CAN.G475.12 Capsicum annuum HOM05D003682 ORTHO05D004224 1.1e-09 69.7 55 52.7
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 1.1e-09 69.7 130 36.2
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 1.1e-09 69.7 76 51.3
SEGI_02938 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.6e-08 65.9 102 35.3
SEGI_19039 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.6e-08 65.9 102 35.3
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 1.5e-06 59.3 74 41.9
Actinidia36898 Actinidia chinensis HOM05D003682 ORTHO05D004224 9.5e-06 56.6 71 42.3


User provided reference genes

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