Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN08G0419 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.5e-70 269.2 124 100.0
FAN13G2545 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.9e-65 252.3 120 95.8
FvH4_5g32450 Fragaria vesca HOM05D004187 ORTHO05D004890 1.3e-64 249.6 120 95.8
FAN18G3642 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.3e-64 249.6 120 95.8
FvH4_4g00760 Fragaria vesca HOM05D004187 ORTHO05D004890 1.6e-64 249.2 120 93.3
FAN12G2319 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.6e-64 249.2 120 93.3
FAN22G0369 Fragaria x ananassa HOM05D004187 ORTHO05D004890 1.1e-63 246.5 120 93.3
RcHm_v2.0_Chr4g0407591 Rosa chinensis HOM05D004187 ORTHO05D004890 3.4e-62 241.5 119 90.8
Prupe.1G018500 Prunus persica HOM05D004187 ORTHO05D004890 4.3e-57 224.6 120 82.5
Dinv25939 Davidia involucrata HOM05D004187 ORTHO05D004890 1.1e-55 219.9 120 78.3
MD16G1197500 Malus domestica HOM05D004187 ORTHO05D004890 1.8e-55 219.2 120 80.0
Nn1g02390 Nelumbo nucifera HOM05D004187 ORTHO05D004890 3.4e-54 214.9 120 78.3
Cfa008463 Carpinus fangiana HOM05D004187 ORTHO05D004890 1.0e-53 213.4 119 80.7
QL06p001566 Quercus lobata HOM05D004187 ORTHO05D004890 1.0e-53 213.4 119 78.2
Haze_11210 Corylus avellana HOM05D004187 ORTHO05D004890 1.3e-53 213.0 119 80.7
Thecc.04G235800 Theobroma cacao HOM05D002650 ORTHO05D002924 6.5e-53 210.7 120 75.8
Rhsim02G0027200 Rhododendron simsii HOM05D004187 ORTHO05D004890 1.4e-52 209.5 119 76.5
Gohir.A10G118400 Gossypium hirsutum HOM05D004187 ORTHO05D004890 2.5e-52 208.8 120 73.3
Gorai.011G165600 Gossypium raimondii HOM05D004187 ORTHO05D004890 2.5e-52 208.8 120 73.3
CiPaw.02G122700 Carya illinoinensis HOM05D004187 ORTHO05D004890 5.5e-52 207.6 119 79.0
Duzib212G0360 Durio zibethinus HOM05D004187 ORTHO05D004890 7.2e-52 207.2 120 73.3
MELO3C006513.2 Cucumis melo HOM05D004187 ORTHO05D004890 1.2e-51 206.5 120 74.2
CsaV3_3G013040 Cucumis sativus L. HOM05D004187 ORTHO05D004890 1.2e-51 206.5 120 74.2
Phvul.002G043400 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 1.2e-51 206.5 119 76.5
Gohir.D10G148300 Gossypium hirsutum HOM05D004187 ORTHO05D004890 1.6e-51 206.1 115 75.7
Sed0024336 Sechium edule HOM05D004187 ORTHO05D004890 2.1e-51 205.7 120 73.3
Actinidia40129 Actinidia chinensis HOM05D004187 ORTHO05D004890 3.5e-51 204.9 119 73.9
Sed0012407 Sechium edule HOM05D004187 ORTHO05D004890 4.6e-51 204.5 120 75.0
ClCG05G004990 Citrullus lanatus HOM05D004187 ORTHO05D004890 7.9e-51 203.8 120 73.3
Potri.008G155800 Populus trichocarpa HOM05D004187 ORTHO05D004890 7.9e-51 203.8 120 75.0
Rhsim04G0199500 Rhododendron simsii HOM05D004187 ORTHO05D004890 3.0e-50 201.8 120 71.7
Sabra08G0118600 Salix brachista HOM05D004187 ORTHO05D004890 3.0e-50 201.8 120 74.2
VMungo0251G0090 Vigna mungo HOM05D004187 ORTHO05D004890 3.0e-50 201.8 118 74.6
TAR362G0393 Trochodendron aralioides HOM05D004187 ORTHO05D004890 3.9e-50 201.4 120 74.2
Atru.chr4.2417 Acer truncatum HOM05D004187 ORTHO05D004890 6.7e-50 200.7 122 69.7
CANSAT78G1519 Cannabis sativa HOM05D004187 ORTHO05D004890 6.7e-50 200.7 119 72.3
Glyma.01G235900 Glycine max HOM05D004187 ORTHO05D004890 6.7e-50 200.7 119 72.3
MBI11_g32998_MAGBIO Magnolia biondii HOM05D002650 ORTHO05D002924 6.7e-50 200.7 119 73.1
Ciclev10005993m.g Citrus clementina HOM05D004187 ORTHO05D004890 1.1e-49 199.9 115 73.0
Medtr5g006610 Medicago truncatula HOM05D004187 ORTHO05D004890 1.1e-49 199.9 119 73.9
TWI73G1209 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 1.5e-49 199.5 118 70.3
Aqoxy2G03437 Aquilegia oxysepala HOM05D004187 ORTHO05D004890 3.3e-49 198.4 121 71.1
CSS0045006 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 3.3e-49 198.4 118 74.6
Atru.chr4.2392 Acer truncatum HOM05D004187 ORTHO05D004890 5.7e-49 197.6 121 69.4
Ca_24413_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 7.4e-49 197.2 118 73.7
Psat2g190440 Pisum sativum HOM05D004187 ORTHO05D004890 9.7e-49 196.8 118 72.0
THA.LOC104803042 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 1.6e-48 196.1 120 69.2
Lalb_Chr05g0211101 Lupinus albus HOM05D004187 ORTHO05D004890 2.2e-48 195.7 118 73.7
vmacro15360 Vaccinium macrocarpon HOM05D004187 ORTHO05D004890 2.8e-48 195.3 119 70.6
TPR.G37887 Trifolium pratense HOM05D004187 ORTHO05D004890 4.8e-48 194.5 118 71.2
TWI53G1349 Tripterygium wilfordii HOM05D004187 ORTHO05D004890 4.8e-48 194.5 121 70.2
Manes.15G031200 Manihot esculenta HOM05D004187 ORTHO05D004890 6.3e-48 194.1 120 70.0
GSVIVG01018017001 Vitis vinifera HOM05D004187 ORTHO05D004890 2.4e-47 192.2 118 72.9
Medtr5g006600 Medicago truncatula HOM05D004187 ORTHO05D004890 3.1e-47 191.8 118 71.2
LjContig00408g0013113 Lotus japonicus HOM05D004187 ORTHO05D004890 5.3e-47 191.0 118 69.5
arahy.Tifrunner.gnm1.ann1.Q6C7EF Arachis hypogaea HOM05D004187 ORTHO05D004890 6.9e-47 190.7 118 71.2
TAR633G0827 Trochodendron aralioides HOM05D004187 ORTHO05D004890 6.9e-47 190.7 121 70.2
Manes.03G175300 Manihot esculenta HOM05D004187 ORTHO05D004890 9.0e-47 190.3 122 67.2
Nitab4.5_0000050g0260 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.2e-46 189.9 119 67.2
arahy.Tifrunner.gnm1.ann1.Q4QH0F Arachis hypogaea HOM05D004187 ORTHO05D004890 1.5e-46 189.5 118 70.3
arahy.Tifrunner.gnm1.ann1.8FXP11 Arachis hypogaea HOM05D004187 ORTHO05D004890 2.0e-46 189.1 118 70.3
CSS0034976 Camellia sinensis var. sinensis HOM05D004187 ORTHO05D004890 2.6e-46 188.7 116 69.8
Eucgr.H03428 Eucalyptus grandis HOM05D004187 ORTHO05D004890 3.4e-46 188.3 120 70.0
Hma1.2p1_0207F.1_g088010 Hydrangea macrophylla HOM05D004187 ORTHO05D004890 3.4e-46 188.3 120 67.5
Carub.0003s2284 Capsella rubella HOM05D004187 ORTHO05D004890 5.9e-46 187.6 120 65.8
Ca_24412_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 5.9e-46 187.6 118 68.6
Ca_30960_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 5.9e-46 187.6 118 68.6
Glyma.11G007300 Glycine max HOM05D004187 ORTHO05D004890 5.9e-46 187.6 112 70.5
THA.LOC104808564 Tarenaya hassleriana HOM05D004187 ORTHO05D004890 5.9e-46 187.6 120 68.3
arahy.Tifrunner.gnm1.ann1.LSRC2Y Arachis hypogaea HOM05D004187 ORTHO05D004890 7.7e-46 187.2 118 70.3
COL.COLO4_21526 Corchorus olitorius HOM05D004187 ORTHO05D004890 7.7e-46 187.2 112 73.2
TPR.G37866 Trifolium pratense HOM05D004187 ORTHO05D004890 7.7e-46 187.2 118 68.6
AL3G36980 Arabidopsis lyrata HOM05D004187 ORTHO05D004890 2.2e-45 185.7 121 64.5
Lj3A731T58 Lonicera japonica HOM05D004187 ORTHO05D004890 2.9e-45 185.3 119 67.2
Nitab4.5_0001792g0010 Nicotiana tabacum HOM05D004187 ORTHO05D004890 3.8e-45 184.9 112 68.8
AT3G22680 Arabidopsis thaliana HOM05D004187 ORTHO05D004890 3.2e-44 181.8 120 64.2
SalBow2G0844 Salvia bowleyana HOM05D004187 ORTHO05D004890 3.2e-44 181.8 118 66.9
SalBow2G2347 Salvia bowleyana HOM05D004187 ORTHO05D004890 4.2e-44 181.4 118 67.8
PSO210G5857 Papaver somniferum HOM05D004187 ORTHO05D004890 5.5e-44 181.0 117 66.7
AUR62001090 Chenopodium quinoa HOM05D004187 ORTHO05D004890 7.2e-44 180.6 120 64.2
PSO170G4884 Papaver somniferum HOM05D004187 ORTHO05D004890 9.4e-44 180.3 117 66.7
BcaC01g03429 Brassica carinata HOM05D004187 ORTHO05D004890 1.6e-43 179.5 119 64.7
BcaC01g03430 Brassica carinata HOM05D004187 ORTHO05D004890 1.6e-43 179.5 119 64.7
C03p52670 Brassica napus HOM05D004187 ORTHO05D004890 1.6e-43 179.5 119 64.7
BolC3t17535H Brassica oleracea HOM05D004187 ORTHO05D004890 1.6e-43 179.5 119 64.7
A03p42920 Brassica napus HOM05D004187 ORTHO05D004890 2.1e-43 179.1 119 64.7
BraA03t13436Z Brassica rapa HOM05D004187 ORTHO05D004890 2.1e-43 179.1 119 64.7
Psat2g190480 Pisum sativum HOM05D004187 ORTHO05D004890 2.1e-43 179.1 113 67.3
Sc19g0004030 Simmondsia chinensis HOM05D004187 ORTHO05D004890 2.7e-43 178.7 120 63.3
Thhalv10021679m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 6.1e-43 177.6 119 63.9
Cc10_g08560 Coffea canephora HOM05D004187 ORTHO05D004890 7.9e-43 177.2 117 67.5
DCAR_031726 Daucus carota HOM05D004187 ORTHO05D004890 1.0e-42 176.8 118 62.7
CARHR098560 Cardamine hirsuta HOM05D004187 ORTHO05D004890 2.3e-42 175.6 115 65.2
AUR62008916 Chenopodium quinoa HOM05D004187 ORTHO05D004890 2.3e-42 175.6 120 62.5
Sp3g20440 Schrenkiella parvula HOM05D004187 ORTHO05D004890 2.3e-42 175.6 120 63.3
Sopen10g014270 Solanum pennellii HOM05D004187 ORTHO05D004890 3.0e-42 175.3 119 63.9
CDE07G0031 Ceratophyllum demersum HOM05D004187 ORTHO05D004890 6.7e-42 174.1 115 64.3
PGR129G0008 Punica granatum HOM05D004187 ORTHO05D004890 1.5e-41 172.9 113 66.4
PGR142G1722 Punica granatum HOM05D004187 ORTHO05D004890 1.5e-41 172.9 113 66.4
MSTRG.4047 Avicennia marina HOM05D004187 ORTHO05D004890 2.5e-41 172.2 118 63.6
PGSC0003DMG401028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.5e-41 172.2 119 62.2
Dinv03045 Davidia involucrata HOM05D004187 ORTHO05D004890 4.3e-41 171.4 118 61.9
BraA05t21487Z Brassica rapa HOM05D004187 ORTHO05D004890 5.7e-41 171.0 119 61.3
Actinidia32414 Actinidia chinensis HOM05D004187 ORTHO05D004890 7.4e-41 170.6 115 63.5
Thhalv10017318m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 4.8e-40 167.9 113 63.7
A05p26020 Brassica napus HOM05D004187 ORTHO05D004890 8.2e-40 167.2 119 59.7
BcaB06g26379 Brassica carinata HOM05D004187 ORTHO05D004890 1.1e-39 166.8 119 59.7
ECA247G0434 Erigeron canadensis HOM05D000045 ORTHO05D004890 1.4e-39 166.4 113 62.8
ECA247G1582 Erigeron canadensis HOM05D004187 ORTHO05D004890 1.8e-39 166.0 119 59.7
Nitab4.5_0001547g0030 Nicotiana tabacum HOM05D004187 ORTHO05D004890 1.8e-39 166.0 119 60.5
Peaxi162Scf00092g00016 Petunia axillaris HOM05D004187 ORTHO05D004890 1.8e-39 166.0 121 58.7
Nitab4.5_0000085g0360 Nicotiana tabacum HOM05D004187 ORTHO05D004890 2.4e-39 165.6 119 59.7
Solyc10g045190.3 Solanum lycopersicum HOM05D004187 ORTHO05D004890 4.1e-39 164.9 112 64.3
PGSC0003DMG402028774 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.1e-39 164.9 112 63.4
BcaC05g28028 Brassica carinata HOM05D004187 ORTHO05D004890 6.9e-39 164.1 119 59.7
C05p40440 Brassica napus HOM05D004187 ORTHO05D004890 6.9e-39 164.1 119 59.7
BolC5t32785H Brassica oleracea HOM05D004187 ORTHO05D004890 6.9e-39 164.1 119 59.7
ECA233G0410 Erigeron canadensis HOM05D004187 ORTHO05D004890 6.9e-39 164.1 118 61.0
Migut.G00365 Erythranthe guttata HOM05D004187 ORTHO05D004890 6.9e-39 164.1 118 61.9
SGA_v2.0_scaffold191G40487 Striga asiatica HOM05D004187 ORTHO05D004890 9.1e-39 163.7 118 61.9
Aa31LG3G2350 Aethionema arabicum HOM05D004187 ORTHO05D004890 2.6e-38 162.2 121 60.3
HanXRQChr08g0219391 Helianthus annuus HOM05D004187 ORTHO05D004890 4.5e-38 161.4 118 59.3
ATR0665G390 Amborella trichopoda HOM05D004187 ORTHO05D004890 1.0e-37 160.2 114 59.6
Peaxi162Scf00245g00106 Petunia axillaris HOM05D004187 ORTHO05D004890 1.3e-37 159.8 113 60.2
Solyc09g082480.2 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.7e-37 159.5 121 56.2
Rhsim03G0003800 Rhododendron simsii HOM05D004187 ORTHO05D004890 2.9e-37 158.7 119 58.0
Sopen09g031340 Solanum pennellii HOM05D004187 ORTHO05D004890 2.9e-37 158.7 121 55.4
HPP92_009615 Vanilla planifolia HOM05D004187 ORTHO05D004890 2.9e-37 158.7 117 57.3
PGSC0003DMG400039476 Solanum tuberosum HOM05D004187 ORTHO05D004890 3.8e-37 158.3 112 58.9
CAN.G1402.3 Capsicum annuum HOM05D004187 ORTHO05D004890 5.5e-36 154.5 119 54.6
Lsat_1_v5_gn_8_21341 Lactuca sativa HOM05D004187 ORTHO05D004890 5.5e-36 154.5 118 56.8
Thhalv10029384m.g Eutrema salsugineum HOM05D004187 ORTHO05D004890 6.1e-35 151.0 115 57.4
Potri.008G076500 Populus trichocarpa HOM05D004187 ORTHO05D004890 4.4e-33 144.8 121 54.5
PGSC0003DMG400040737 Solanum tuberosum HOM05D004187 ORTHO05D004890 2.2e-32 142.5 107 56.1
Cfa001472 Carpinus fangiana HOM05D004187 ORTHO05D004890 2.4e-31 139.0 122 53.3
Prupe.2G235500 Prunus persica HOM05D004187 ORTHO05D004890 3.1e-31 138.7 119 49.6
QL08p059729 Quercus lobata HOM05D004187 ORTHO05D004890 3.1e-31 138.7 119 49.6
PGSC0003DMG400039782 Solanum tuberosum HOM05D004187 ORTHO05D004890 5.3e-31 137.9 102 56.9
AUR62001087 Chenopodium quinoa HOM05D004187 ORTHO05D004890 7.0e-31 137.5 90 63.3
unitig_22.g6822 Utricularia gibba HOM05D004187 ORTHO05D004890 1.6e-30 136.3 118 49.2
Sopen09g031300 Solanum pennellii HOM05D004187 ORTHO05D004890 2.0e-30 136.0 113 52.2
Nn6g35138 Nelumbo nucifera HOM05D004187 ORTHO05D004890 7.7e-30 134.0 107 61.7
Haze_17068 Corylus avellana HOM05D004187 ORTHO05D004890 1.0e-29 133.7 127 50.4
RcHm_v2.0_Chr1g0367131 Rosa chinensis HOM05D004187 ORTHO05D004890 1.3e-29 133.3 113 54.0
Sopen09g031290 Solanum pennellii HOM05D004187 ORTHO05D004890 1.9e-28 129.4 97 56.7
COL.COLO4_15044 Corchorus olitorius HOM05D004187 ORTHO05D004890 3.6e-27 125.2 117 46.2
Solyc09g082430.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.0e-26 123.6 96 57.3
Atru.chr1.2916 Acer truncatum HOM05D004187 ORTHO05D004890 1.4e-26 123.2 109 51.4
Manes.12G002301 Manihot esculenta HOM05D004187 ORTHO05D004890 2.3e-26 122.5 106 55.7
Solyc09g082420.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 3.0e-26 122.1 93 58.1
Atru.chr7.913 Acer truncatum HOM05D004187 ORTHO05D004890 6.7e-26 120.9 110 51.8
Lalb_Chr10g0091621 Lupinus albus HOM05D004187 ORTHO05D004890 1.8e-23 112.8 122 45.1
Phvul.008G010500 Phaseolus vulgaris HOM05D004187 ORTHO05D004890 3.5e-22 108.6 111 45.9
PGSC0003DMG400032269 Solanum tuberosum HOM05D004187 ORTHO05D004890 4.5e-22 108.2 82 54.9
Duzib114G0324 Durio zibethinus HOM05D004187 ORTHO05D004890 5.9e-22 107.8 101 42.6
Atru.chr1.2920 Acer truncatum HOM05D004187 ORTHO05D004890 3.8e-21 105.1 116 45.7
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 6.5e-21 104.4 119 46.2
VMungo1383G1788 Vigna mungo HOM05D004187 ORTHO05D004890 6.5e-21 104.4 113 43.4
PGSC0003DMG400013771 Solanum tuberosum HOM05D004187 ORTHO05D004890 8.5e-21 104.0 74 58.1
Lj1g0009372 Lotus japonicus HOM05D004187 ORTHO05D004890 2.5e-20 102.4 114 43.9
Lj1g0019332 Lotus japonicus HOM05D004187 ORTHO05D004890 2.5e-20 102.4 114 43.9
Solyc09g082440.1 Solanum lycopersicum HOM05D004187 ORTHO05D004890 1.2e-19 100.1 73 60.3
Ca_12246_v3 Cicer arietinum L. HOM05D004187 ORTHO05D004890 1.6e-19 99.8 107 45.8
Lj1g0011366 Lotus japonicus HOM05D004187 ORTHO05D004890 3.0e-18 95.5 114 41.2
Lalb_Chr16g0376451 Lupinus albus HOM05D004187 ORTHO05D004890 4.0e-18 95.1 47 85.1
Sabra10G0059200 Salix brachista HOM05D004187 ORTHO05D004890 5.4e-15 84.7 116 41.4
Thecc.10G042200 Theobroma cacao HOM05D009017 ORTHO05D010462 2.0e-14 82.8 97 41.2
PGSC0003DMG400032265 Solanum tuberosum HOM05D004187 ORTHO05D004890 7.7e-14 80.9 66 50.0
Zm00001eb275620 Zea mays HOM05D004187 ORTHO05D004890 3.6e-11 72.0 42 73.8
Gohir.A10G219300 Gossypium hirsutum HOM05D009017 ORTHO05D010462 2.3e-10 69.3 96 38.5
Potri.010G083751 Populus trichocarpa HOM05D004187 ORTHO05D004890 4.4e-09 65.1 42 59.5
BcaB03g14654 Brassica carinata HOM05D004187 ORTHO05D004890 4.1e-07 58.5 70 37.1


User provided reference genes

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