Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1972 Fragaria x ananassa HOM05D005328 ORTHO05D006049 2.9e-207 725.7 598 100.0
FAN17G2578 Fragaria x ananassa HOM05D005328 ORTHO05D006049 2.5e-179 632.9 598 87.0
FAN12G3626 Fragaria x ananassa HOM05D005328 ORTHO05D006049 2.2e-178 629.8 620 87.1
FvH4_4g13451 Fragaria vesca HOM05D005328 ORTHO05D006049 2.4e-177 626.3 620 86.8
FAN22G2230 Fragaria x ananassa HOM05D005328 ORTHO05D006049 3.4e-168 595.9 619 84.0
RcHm_v2.0_Chr4g0414011 Rosa chinensis HOM05D005328 ORTHO05D006049 2.0e-120 437.2 601 71.9
MD04G1014200 Malus domestica HOM05D005328 ORTHO05D006049 7.8e-96 355.5 605 63.0
Prupe.1G161200 Prunus persica HOM05D005328 ORTHO05D006049 1.4e-92 344.7 607 67.7
CSS0022453 Camellia sinensis var. sinensis HOM05D005328 ORTHO05D006049 2.3e-79 300.8 606 42.7
Rhsim13G0137800 Rhododendron simsii HOM05D005328 ORTHO05D006049 5.6e-78 296.2 605 39.5
Dinv04372 Davidia involucrata HOM05D005328 ORTHO05D006049 4.8e-77 293.1 604 39.4
Cpa.g.sc53.124 Carica papaya HOM05D005328 ORTHO05D006049 9.0e-76 288.9 603 42.8
Eucgr.E04239 Eucalyptus grandis HOM05D005328 ORTHO05D006049 4.5e-75 286.6 601 41.8
Hund04726 Selenicereus undatus HOM05D005328 ORTHO05D006049 3.8e-74 283.5 600 41.0
Actinidia02271 Actinidia chinensis HOM05D005328 ORTHO05D006049 1.1e-73 282.0 603 40.0
GSVIVG01018754001 Vitis vinifera HOM05D005328 ORTHO05D006049 1.4e-73 281.6 623 57.1
Lj6g0010372 Lotus japonicus HOM05D005328 ORTHO05D006049 3.2e-73 280.4 606 40.3
Atru.chr1.2204 Acer truncatum HOM05D005328 ORTHO05D006049 4.2e-73 280.0 622 39.5
Manes.03G095600 Manihot esculenta HOM05D005328 ORTHO05D006049 7.1e-73 279.3 617 38.1
Hma1.2p1_0391F.1_g142830 Hydrangea macrophylla HOM05D005328 ORTHO05D006049 1.2e-72 278.5 600 38.7
Thecc.04G160200 Theobroma cacao HOM05D005328 ORTHO05D006049 1.6e-72 278.1 610 41.8
CAN.G2049.4 Capsicum annuum HOM05D005328 ORTHO05D006049 7.9e-72 275.8 603 42.3
VMungo0540G0318 Vigna mungo HOM05D005328 ORTHO05D006049 3.9e-71 273.5 610 43.1
PGR042G0801 Punica granatum HOM05D005328 ORTHO05D006049 6.7e-71 272.7 604 41.1
Aa31LG1G25860 Aethionema arabicum HOM05D005328 ORTHO05D006049 2.5e-70 270.8 612 40.0
Glyma.15G123900 Glycine max HOM05D005328 ORTHO05D006049 3.3e-70 270.4 603 42.3
Nitab4.5_0005721g0030 Nicotiana tabacum HOM05D005328 ORTHO05D006049 1.3e-69 268.5 610 40.0
Ca_00786_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 2.8e-69 267.3 598 44.8
Ca_11373_v3 Cicer arietinum L. HOM05D005328 ORTHO05D006049 2.8e-69 267.3 598 44.8
Phvul.006G134100 Phaseolus vulgaris HOM05D005328 ORTHO05D006049 2.8e-69 267.3 608 39.1
vmacro03583 Vaccinium macrocarpon HOM05D005328 ORTHO05D006049 2.8e-69 267.3 582 38.7
Medtr2g028200 Medicago truncatula HOM05D005328 ORTHO05D006049 3.7e-69 266.9 603 53.6
Lalb_Chr15g0088491 Lupinus albus HOM05D005328 ORTHO05D006049 4.8e-69 266.5 605 41.3
Potri.006G000200 Populus trichocarpa HOM05D005328 ORTHO05D006049 6.3e-69 266.2 620 46.8
TAR626G1462 Trochodendron aralioides HOM05D005328 ORTHO05D006049 6.3e-69 266.2 603 45.1
Sc13g0008540 Simmondsia chinensis HOM05D005328 ORTHO05D006049 1.1e-68 265.4 602 40.5
Ciclev10015350m.g Citrus clementina HOM05D005328 ORTHO05D006049 3.1e-68 263.8 604 39.2
Cc09_g00040 Coffea canephora HOM05D005328 ORTHO05D006049 3.1e-68 263.8 611 43.5
Gohir.A02G007200 Gossypium hirsutum HOM05D005328 ORTHO05D006049 3.1e-68 263.8 605 38.3
A05p04290 Brassica napus HOM05D005328 ORTHO05D006049 5.3e-68 263.1 604 44.7
TWI63G1825 Tripterygium wilfordii HOM05D005328 ORTHO05D006049 6.9e-68 262.7 615 40.8
COL.COLO4_12851 Corchorus olitorius HOM05D005328 ORTHO05D006049 1.5e-67 261.5 606 39.8
Duzib151G0457 Durio zibethinus HOM05D005328 ORTHO05D006049 1.5e-67 261.5 604 38.2
Gohir.D02G007001 Gossypium hirsutum HOM05D005328 ORTHO05D006049 2.0e-67 261.2 606 38.8
Oeu016925.1 Olea europaea HOM05D005328 ORTHO05D006049 2.6e-67 260.8 613 44.4
Sopen02g029040 Solanum pennellii HOM05D005328 ORTHO05D006049 1.0e-66 258.8 609 39.2
BcaB02g08879 Brassica carinata HOM05D005328 ORTHO05D006049 1.7e-66 258.1 609 45.5
BraA05t19414Z Brassica rapa HOM05D005328 ORTHO05D006049 3.8e-66 256.9 603 39.6
Gorai.005G008200 Gossypium raimondii HOM05D005328 ORTHO05D006049 5.0e-66 256.5 605 40.5
SEGI_06923 Sequoiadendron giganteum HOM05D005328 ORTHO05D006049 5.0e-66 256.5 633 49.9
Ah.07g207330 Amaranthus hybridus HOM05D005328 ORTHO05D002024 6.5e-66 256.1 660 50.5
Aqoxy6G01137 Aquilegia oxysepala HOM05D005328 ORTHO05D006049 8.5e-66 255.8 631 44.5
Solyc02g084340.3 Solanum lycopersicum HOM05D005328 ORTHO05D006049 1.1e-65 255.4 609 41.2
C04p05070 Brassica napus HOM05D005328 ORTHO05D006049 1.4e-65 255.0 605 43.5
BcaC02g12330 Brassica carinata HOM05D005328 ORTHO05D006049 1.9e-65 254.6 603 40.6
ECA234G3238 Erigeron canadensis HOM05D005328 ORTHO05D006049 1.9e-65 254.6 606 37.3
THA.LOC104804861 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 2.5e-65 254.2 609 42.5
THA.LOC104807080 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 2.5e-65 254.2 609 42.5
CiPaw.10G085200 Carya illinoinensis HOM05D005328 ORTHO05D006049 3.2e-65 253.8 606 46.0
C03p29470 Brassica napus HOM05D005328 ORTHO05D006049 9.3e-65 252.3 608 42.9
BraA03t11679Z Brassica rapa HOM05D005328 ORTHO05D006049 1.2e-64 251.9 603 46.6
TPR.G10498 Trifolium pratense HOM05D005328 ORTHO05D006049 1.6e-64 251.5 598 43.0
BcaC01g05181 Brassica carinata HOM05D005328 ORTHO05D006049 2.1e-64 251.1 608 42.8
A03p24730 Brassica napus HOM05D005328 ORTHO05D006049 2.1e-64 251.1 603 46.4
arahy.Tifrunner.gnm1.ann1.B05UD4 Arachis hypogaea HOM05D005328 ORTHO05D006049 7.9e-64 249.2 607 42.0
unitig_748.g7855 Utricularia gibba HOM05D005328 ORTHO05D006049 1.8e-63 248.1 611 37.2
AUR62021212 Chenopodium quinoa HOM05D005328 ORTHO05D006049 3.0e-63 247.3 599 42.9
CARHR139360 Cardamine hirsuta HOM05D005328 ORTHO05D006049 1.5e-62 245.0 602 49.5
SGA_v2.0_scaffold7G03648 Striga asiatica HOM05D005328 ORTHO05D006049 1.5e-62 245.0 597 36.0
Peaxi162Scf00083g00091 Petunia axillaris HOM05D005328 ORTHO05D006049 1.9e-62 244.6 613 43.4
CDE03G0050 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 3.3e-62 243.8 601 42.3
Migut.M01485 Erythranthe guttata HOM05D005328 ORTHO05D006049 5.7e-62 243.0 601 39.9
HanXRQChr17g0558521 Helianthus annuus HOM05D005328 ORTHO05D006049 7.4e-62 242.7 602 39.4
Lsat_1_v5_gn_4_65161 Lactuca sativa HOM05D005328 ORTHO05D006049 7.4e-62 242.7 600 35.7
Psat1g170800 Pisum sativum HOM05D005328 ORTHO05D006049 9.7e-62 242.3 606 50.0
Sp4g26280 Schrenkiella parvula HOM05D005328 ORTHO05D006049 1.3e-61 241.9 602 46.3
arahy.Tifrunner.gnm1.ann1.QMQM64 Arachis hypogaea HOM05D005328 ORTHO05D006049 3.7e-61 240.4 606 45.9
Thhalv10001457m.g Eutrema salsugineum HOM05D005328 ORTHO05D006049 3.7e-61 240.4 609 44.0
HPP92_007484 Vanilla planifolia HOM05D005328 ORTHO05D006049 6.3e-61 239.6 598 37.8
Nitab4.5_0002880g0010 Nicotiana tabacum HOM05D005328 ORTHO05D006049 3.1e-60 237.3 609 36.3
Sabra06G0000700 Salix brachista HOM05D005328 ORTHO05D006049 2.0e-59 234.6 618 43.4
PGSC0003DMG400003630 Solanum tuberosum HOM05D005328 ORTHO05D006049 4.5e-59 233.4 627 56.5
QL05p066147 Quercus lobata HOM05D005328 ORTHO05D006049 1.3e-58 231.9 616 37.5
AL4G43160 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.7e-58 231.5 606 43.1
AT2G44200 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 2.2e-58 231.1 614 44.8
PSO017G7149 Papaver somniferum HOM05D005328 ORTHO05D006049 6.5e-58 229.6 611 47.1
PSO170G6444 Papaver somniferum HOM05D005328 ORTHO05D006049 3.2e-57 227.3 613 51.2
Sed0006700 Sechium edule HOM05D005328 ORTHO05D006049 3.2e-57 227.3 606 45.2
EL10Ac3g05669 Beta vulgaris HOM05D005328 ORTHO05D006049 7.2e-57 226.1 614 46.7
MELO3C017635.2 Cucumis melo HOM05D005328 ORTHO05D006049 7.2e-57 226.1 177 70.1
Glyma.09G018000 Glycine max HOM05D005328 ORTHO05D006049 7.2e-57 226.1 603 51.1
CsaV3_4G004310 Cucumis sativus L. HOM05D005328 ORTHO05D006049 6.1e-56 223.0 177 68.9
THA.LOC104798630 Tarenaya hassleriana HOM05D005328 ORTHO05D006049 8.8e-55 219.2 242 57.4
DCAR_022839 Daucus carota HOM05D005328 ORTHO05D006049 1.5e-54 218.4 169 69.8
BcaB01g03324 Brassica carinata HOM05D005328 ORTHO05D006049 7.4e-54 216.1 601 37.3
ClCG07G017100 Citrullus lanatus HOM05D005328 ORTHO05D006049 3.1e-52 210.7 251 56.6
SalBow8G1780 Salvia bowleyana HOM05D005328 ORTHO05D006049 3.1e-52 210.7 610 41.8
Carub.0004s2678 Capsella rubella HOM05D005328 ORTHO05D006049 5.3e-52 209.9 605 45.5
Pp3c3_9980 Physcomitrium patens HOM05D005328 ORTHO05D006049 1.2e-51 208.8 171 66.1
BolC3t15295H Brassica oleracea HOM05D005328 ORTHO05D006049 2.0e-51 208.0 638 39.2
Os08g0500200 Oryza sativa ssp. japonica HOM05D005328 ORTHO05D006049 1.6e-48 198.4 613 47.5
AagrBONN_evm.TU.Sc2ySwM_228.5016 Anthoceros agrestis HOM05D005328 ORTHO05D006049 3.0e-47 194.1 242 52.1
SMO143G0138 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.2e-43 182.2 168 61.3
Prupe.1G161500 Prunus persica HOM05D005328 ORTHO05D006049 1.5e-41 175.3 138 68.1
Prupe.1G162300 Prunus persica HOM05D005328 ORTHO05D006049 1.5e-41 175.3 238 49.6
Mapoly0104s0032 Marchantia polymorpha HOM05D005328 ORTHO05D006049 1.3e-37 162.2 179 53.1
CBR_g2953 Chara braunii HOM05D005328 ORTHO05D006049 9.1e-36 156.0 175 52.0
Carub.0004s2677 Capsella rubella HOM05D005328 ORTHO05D006049 2.9e-34 151.0 161 58.4
ATR0751G077 Amborella trichopoda HOM05D005328 ORTHO05D006049 4.0e-31 140.6 97 77.3
AUR62016005 Chenopodium quinoa HOM05D005328 ORTHO05D006049 1.5e-30 138.7 81 84.0
Zm00001eb034090 Zea mays HOM05D005328 ORTHO05D006049 2.0e-30 138.3 611 42.4
CDE06G1717 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 4.4e-30 137.1 88 81.8
AUR62016004 Chenopodium quinoa HOM05D005328 ORTHO05D006049 4.4e-30 137.1 488 42.4
AT2G44195 Arabidopsis thaliana HOM05D005328 ORTHO05D006049 7.5e-30 136.3 148 52.7
QL05p065813 Quercus lobata HOM05D005328 ORTHO05D006049 2.2e-29 134.8 80 86.2
DCAR_022842 Daucus carota HOM05D005328 ORTHO05D006049 1.1e-28 132.5 131 61.8
Nn1g08402 Nelumbo nucifera HOM05D005328 ORTHO05D006049 1.2e-27 129.0 625 29.1
CDE06G0152 Ceratophyllum demersum HOM05D005328 ORTHO05D006049 1.0e-23 115.9 103 64.1
Cre01.g021400 Chlamydomonas reinhardtii HOM05D005328 ORTHO05D006049 4.4e-22 110.5 177 38.4
SMO114G0026 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 7.8e-19 99.8 568 24.3
Zm00001eb097520 Zea mays HOM05D005328 ORTHO05D006049 7.8e-19 99.8 103 54.4
PRCOL_00001794 Prasinoderma coloniale HOM05D005328 ORTHO05D006049 2.9e-18 97.8 178 36.5
Haze_07067 Corylus avellana HOM05D005328 ORTHO05D006049 6.6e-18 96.7 145 46.9
AL4G43150 Arabidopsis lyrata HOM05D005328 ORTHO05D006049 1.5e-17 95.5 154 49.4
SMO117G0350 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.9e-17 95.1 138 47.1
SMO246G0007 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 2.5e-17 94.7 63 76.2
TAR371G0561 Trochodendron aralioides HOM05D005328 ORTHO05D006049 8.0e-16 89.7 58 81.0
VMungo1383G0559 Vigna mungo HOM05D005328 ORTHO05D006049 2.0e-14 85.1 53 77.4
ATR0751G111 Amborella trichopoda HOM05D005328 ORTHO05D006049 2.6e-14 84.7 495 33.5
SMO117G0022 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 3.4e-14 84.3 110 49.1
MCO07G343 Micromonas commoda HOM05D005328 ORTHO05D006049 4.9e-13 80.5 153 40.5
SMO117G0182 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 5.4e-12 77.0 93 51.6
Sabra16G0007800 Salix brachista HOM05D000040 ORTHO05D001305 2.0e-11 75.1 115 44.3
BcaB02g08878 Brassica carinata HOM05D005328 ORTHO05D006049 3.5e-11 74.3 91 54.9
SMO117G0245 Selaginella moellendorffii HOM05D005328 ORTHO05D006049 1.0e-10 72.8 87 49.4
Cfa024420 Carpinus fangiana HOM05D005328 ORTHO05D006049 4.3e-09 67.4 169 29.0
Actinidia26768 Actinidia chinensis HOM05D005328 ORTHO05D006049 8.0e-08 63.2 52 69.2
CiPaw.09G114000 Carya illinoinensis HOM05D005328 ORTHO05D006049 6.8e-07 60.1 55 61.8
CiPaw.09G114200 Carya illinoinensis HOM05D005328 ORTHO05D006049 6.8e-07 60.1 55 61.8


User provided reference genes

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