Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 1.0e-271 939.5 480 100.0
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.0e-267 925.2 480 98.3
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 2.9e-266 921.4 480 97.9
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 1.4e-265 919.1 480 97.5
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 3.7e-237 824.7 482 90.2
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 2.5e-209 732.3 481 79.6
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 1.2e-208 729.9 482 79.5
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 6.1e-192 674.5 482 73.2
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 1.0e-191 673.7 492 71.5
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 5.2e-191 671.4 495 71.1
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 7.0e-188 661.0 497 71.4
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 3.5e-187 658.7 489 70.1
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 8.6e-186 654.1 489 69.7
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 4.2e-185 651.7 488 70.5
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 2.1e-184 649.4 485 72.0
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 6.8e-183 644.4 488 72.3
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 4.4e-182 641.7 486 70.6
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 2.7e-179 632.5 477 69.6
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 4.5e-179 631.7 487 70.2
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 1.0e-178 630.6 490 69.6
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 2.3e-178 629.4 491 69.0
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 2.9e-178 629.0 484 70.0
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 3.9e-178 628.6 477 70.9
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 5.0e-178 628.2 478 70.7
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 5.0e-178 628.2 481 70.1
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 7.3e-177 624.4 485 69.3
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 1.2e-176 623.6 499 67.7
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 3.6e-176 622.1 478 68.4
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 6.1e-176 621.3 491 68.4
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 5.2e-175 618.2 496 67.3
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 3.4e-174 615.5 478 69.2
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 7.5e-174 614.4 528 63.6
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 3.2e-172 609.0 471 69.9
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 9.2e-172 607.4 477 68.1
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 9.2e-172 607.4 467 69.0
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 6.0e-171 604.7 479 68.5
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 8.6e-170 600.9 451 71.0
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 2.5e-169 599.4 481 66.5
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 2.5e-169 599.4 493 66.7
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 1.2e-168 597.0 471 67.9
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 1.6e-168 596.7 472 67.8
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 4.7e-168 595.1 450 70.4
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 6.2e-168 594.7 459 68.4
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 8.0e-168 594.3 493 66.3
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 8.0e-168 594.3 478 67.8
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 1.4e-167 593.6 481 66.1
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 4.0e-167 592.0 483 66.9
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 2.0e-166 589.7 493 65.5
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 2.6e-166 589.3 447 69.4
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 2.6e-166 589.3 502 65.5
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 7.5e-166 587.8 518 63.5
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 4.9e-165 585.1 452 68.6
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 1.9e-164 583.2 463 66.7
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 7.1e-164 581.3 499 64.7
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 9.2e-164 580.9 434 70.0
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 1.2e-163 580.5 451 69.2
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 3.5e-163 578.9 447 68.5
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 6.0e-163 578.2 481 65.5
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 1.0e-162 577.4 449 68.4
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 6.6e-162 574.7 482 64.1
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 8.6e-162 574.3 487 64.1
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 8.6e-162 574.3 475 63.6
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 1.9e-161 573.2 485 62.7
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 2.1e-160 569.7 467 66.0
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 2.1e-160 569.7 498 62.4
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 4.7e-160 568.5 493 63.9
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 8.1e-160 567.8 421 70.1
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 3.1e-159 565.8 435 68.0
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 8.9e-159 564.3 483 64.0
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 1.2e-158 563.9 452 66.2
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 4.4e-158 562.0 482 62.9
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 4.4e-158 562.0 484 63.0
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 9.9e-158 560.8 479 63.5
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 1.9e-156 556.6 491 62.5
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 4.1e-156 555.4 493 62.5
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 5.4e-156 555.1 381 75.3
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 5.4e-156 555.1 406 71.9
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 2.7e-155 552.7 474 63.3
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 2.7e-155 552.7 423 67.6
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 4.6e-155 552.0 447 66.0
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 2.3e-154 549.7 385 74.3
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 7.3e-153 544.7 400 69.8
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 1.9e-148 530.0 492 58.7
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 2.5e-145 519.6 494 59.9
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 9.6e-145 517.7 422 64.7
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 4.8e-144 515.4 355 71.8
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 5.3e-143 511.9 494 59.1
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 1.7e-141 506.9 491 59.1
FAN12G0203 Fragaria x ananassa HOM05D005856 ORTHO05D007264 7.1e-140 501.5 253 98.0
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 2.7e-139 499.6 530 55.7
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 2.3e-138 496.5 484 59.1
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 6.9e-135 485.0 383 66.8
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 7.6e-134 481.5 354 72.6
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 1.2e-131 474.2 391 62.1
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 3.0e-130 469.5 414 59.9
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 6.7e-130 468.4 474 56.5
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 4.8e-128 462.2 373 66.5
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.5e-126 457.2 461 54.9
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 5.5e-124 448.7 351 63.8
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 3.9e-122 442.6 495 51.5
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 7.6e-118 428.3 363 61.4
Cc11_g00900 Coffea canephora HOM05D005856 ORTHO05D007264 7.4e-113 411.8 293 71.3
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 2.8e-112 409.8 380 57.4
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 1.6e-107 394.0 341 60.4
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 2.0e-105 387.1 432 50.0
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 2.5e-105 386.7 450 49.8
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 9.7e-105 384.8 439 50.8
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 9.7e-105 384.8 394 54.6
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 8.2e-96 355.1 269 68.8
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 1.3e-93 347.8 472 46.0
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 1.3e-93 347.8 379 49.3
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 3.2e-92 343.2 274 66.8
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 9.1e-79 298.5 343 50.1
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 3.6e-75 286.6 354 47.5
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 9.2e-71 271.9 311 50.5
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 1.6e-70 271.2 246 60.2
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 6.4e-64 249.2 479 36.1
ECA240G4225 Erigeron canadensis HOM05D005856 ORTHO05D007264 3.3e-60 236.9 283 49.8
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 1.1e-52 211.8 490 31.0
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 6.0e-38 162.9 117 74.4
Haze_12396 Corylus avellana HOM05D005856 ORTHO05D007264 1.6e-35 154.8 124 65.3
Cfa005743 Carpinus fangiana HOM05D005856 ORTHO05D007264 6.0e-30 136.3 134 61.9
Medtr3g085580 Medicago truncatula HOM05D005856 ORTHO05D007264 1.1e-28 132.1 172 47.7
SMO199G0052 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 3.6e-27 127.1 184 42.9
Dinv17562 Davidia involucrata HOM05D005856 ORTHO05D015634 1.5e-20 105.1 104 52.9
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 1.9e-20 104.8 126 52.4
SMO199G0068 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 9.6e-20 102.4 225 36.0
SMO361G0803 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 2.6e-17 94.4 203 34.0
SMO199G0090 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 5.8e-17 93.2 89 53.9
Cc02_g32220 Coffea canephora HOM05D005856 ORTHO05D007264 1.9e-15 88.2 161 42.9
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 7.4e-12 76.3 268 28.7
Migut.O00545 Erythranthe guttata HOM05D005856 ORTHO05D007264 2.4e-10 71.2 122 41.0
SalBow4G2969 Salvia bowleyana HOM05D005856 ORTHO05D015634 2.0e-09 68.2 69 50.7
AL2G26330 Arabidopsis lyrata HOM05D001487 ORTHO05D001365 3.4e-09 67.4 67 53.7
Rhsim10G0039300 Rhododendron simsii HOM05D005856 ORTHO05D007264 7.6e-09 66.2 47 74.5


User provided reference genes

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