Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G1413 Fragaria x ananassa HOM05D005445 ORTHO05D007043 1.7e-235 818.9 416 100.0
FAN17G2613 Fragaria x ananassa HOM05D005445 ORTHO05D007043 2.4e-176 622.5 422 81.0
FvH4_4g06040 Fragaria vesca HOM05D005445 ORTHO05D007043 3.8e-166 588.6 317 95.6
RcHm_v2.0_Chr4g0397601 Rosa chinensis HOM05D005445 ORTHO05D007043 1.2e-162 577.0 318 92.5
MD16G1238000 Malus domestica HOM05D005445 ORTHO05D007043 1.3e-137 493.8 323 79.3
Prupe.1G063800 Prunus persica HOM05D005445 ORTHO05D007043 8.3e-137 491.1 323 79.6
Thecc.09G196900 Theobroma cacao HOM05D005445 ORTHO05D007043 2.1e-127 459.9 323 74.6
CiPaw.15G161100 Carya illinoinensis HOM05D005445 ORTHO05D007043 1.7e-126 456.8 323 73.7
Gohir.A08G017100 Gossypium hirsutum HOM05D005445 ORTHO05D007043 2.3e-126 456.4 320 74.1
GSVIVG01032266001 Vitis vinifera HOM05D005445 ORTHO05D007043 3.9e-126 455.7 323 74.6
CANSAT80G1260 Cannabis sativa HOM05D005445 ORTHO05D007043 2.5e-125 453.0 319 74.0
Glyma.08G027200 Glycine max HOM05D005445 ORTHO05D007043 1.2e-124 450.7 323 74.6
Ciclev10008923m.g Citrus clementina HOM05D005445 ORTHO05D007043 2.8e-124 449.5 323 73.7
Manes.02G221800 Manihot esculenta HOM05D005445 ORTHO05D007043 3.6e-124 449.1 305 75.1
Gohir.D08G027500 Gossypium hirsutum HOM05D005445 ORTHO05D007043 1.1e-123 447.6 320 73.1
Dinv12613 Davidia involucrata HOM05D005445 ORTHO05D007043 3.1e-123 446.0 323 73.4
Cpa.g.sc115.19 Carica papaya HOM05D005445 ORTHO05D007043 1.2e-122 444.1 320 74.1
Atru.chr7.1013 Acer truncatum HOM05D005445 ORTHO05D007043 1.5e-122 443.7 319 73.7
Gorai.004G024500 Gossypium raimondii HOM05D005445 ORTHO05D007043 2.0e-122 443.4 325 72.0
Hma1.2p1_0314F.1_g122070 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 2.2e-121 439.9 322 71.7
QL11p008649 Quercus lobata HOM05D005445 ORTHO05D007043 2.9e-121 439.5 363 66.1
TPR.G25470 Trifolium pratense HOM05D005445 ORTHO05D007043 4.9e-121 438.7 316 74.1
Medtr8g101230 Medicago truncatula HOM05D005445 ORTHO05D007043 6.4e-121 438.3 319 73.7
Ca_17431_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.1e-120 437.6 319 72.7
Ca_17440_v3 Cicer arietinum L. HOM05D005445 ORTHO05D007043 1.1e-120 437.6 319 72.7
Lj4g0004845 Lotus japonicus HOM05D005445 ORTHO05D007043 3.2e-120 436.0 318 73.3
Psat7g020920 Pisum sativum HOM05D005445 ORTHO05D007043 3.2e-120 436.0 319 72.7
VMungo0251G0086 Vigna mungo HOM05D005445 ORTHO05D007043 1.6e-119 433.7 322 71.7
CiPaw.16G104300 Carya illinoinensis HOM05D005445 ORTHO05D007043 6.0e-119 431.8 324 71.0
TWI63G1185 Tripterygium wilfordii HOM05D005445 ORTHO05D007043 1.7e-118 430.3 321 72.0
Phvul.002G302400 Phaseolus vulgaris HOM05D005445 ORTHO05D007043 2.3e-118 429.9 321 72.3
Glyma.05G220700 Glycine max HOM05D005445 ORTHO05D007043 8.6e-118 427.9 323 72.4
TAR383G0382 Trochodendron aralioides HOM05D005445 ORTHO05D007043 8.6e-118 427.9 328 68.9
Lalb_Chr09g0332001 Lupinus albus HOM05D005445 ORTHO05D007043 2.5e-117 426.4 320 71.6
Solyc07g017400.3 Solanum lycopersicum HOM05D005445 ORTHO05D007043 1.2e-116 424.1 323 68.1
arahy.Tifrunner.gnm1.ann1.HNJF4G Arachis hypogaea HOM05D005445 ORTHO05D007043 2.1e-116 423.3 323 72.1
Actinidia07565 Actinidia chinensis HOM05D005445 ORTHO05D007043 2.8e-116 422.9 323 70.3
TAR383G1024 Trochodendron aralioides HOM05D005445 ORTHO05D007043 3.6e-116 422.5 317 70.3
Sopen07g006100 Solanum pennellii HOM05D005445 ORTHO05D007043 4.7e-116 422.2 323 67.8
CSS0000968 Camellia sinensis var. sinensis HOM05D005445 ORTHO05D007043 1.4e-115 420.6 330 68.5
Cfa020755 Carpinus fangiana HOM05D005445 ORTHO05D007043 3.1e-115 419.5 308 73.1
Sabra06G0059700 Salix brachista HOM05D005445 ORTHO05D007043 2.6e-114 416.4 321 69.2
Duzib168G0912 Durio zibethinus HOM05D005445 ORTHO05D007043 7.6e-114 414.8 336 67.3
MBI13_g31572_MAGBIO Magnolia biondii HOM05D005445 ORTHO05D007043 9.9e-114 414.5 315 70.2
Nn8g41135 Nelumbo nucifera HOM05D005445 ORTHO05D007043 5.4e-112 408.7 327 66.7
CAN.G146.2 Capsicum annuum HOM05D005445 ORTHO05D007043 1.2e-111 407.5 323 65.9
Rhsim04G0099700 Rhododendron simsii HOM05D005445 ORTHO05D007043 3.0e-110 402.9 320 67.8
MELO3C003927.2 Cucumis melo HOM05D005445 ORTHO05D007043 6.6e-110 401.7 319 68.0
CsaV3_2G009110 Cucumis sativus L. HOM05D005445 ORTHO05D007043 8.7e-110 401.4 321 68.2
Eucgr.C00062 Eucalyptus grandis HOM05D005445 ORTHO05D007043 8.7e-110 401.4 310 68.4
Aqoxy7G02630 Aquilegia oxysepala HOM05D005445 ORTHO05D007043 1.5e-109 400.6 320 65.9
Nitab4.5_0000899g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 3.3e-109 399.4 313 66.1
MSTRG.26517 Avicennia marina HOM05D005445 ORTHO05D007043 5.6e-109 398.7 322 64.3
Nitab4.5_0004036g0030 Nicotiana tabacum HOM05D005445 ORTHO05D007043 5.6e-109 398.7 308 67.5
Duzib170G0675 Durio zibethinus HOM05D005445 ORTHO05D007043 9.6e-109 397.9 330 65.2
SGA_v2.0_scaffold485G52365 Striga asiatica HOM05D005445 ORTHO05D007043 1.6e-108 397.1 322 64.6
Potri.006G078800 Populus trichocarpa HOM05D005445 ORTHO05D007043 3.6e-108 396.0 318 67.0
Hund03231 Selenicereus undatus HOM05D005445 ORTHO05D007043 3.6e-108 396.0 320 65.6
ClCG11G011350 Citrullus lanatus HOM05D005445 ORTHO05D007043 6.2e-108 395.2 405 59.3
arahy.Tifrunner.gnm1.ann1.K4ERET Arachis hypogaea HOM05D005445 ORTHO05D007043 8.1e-108 394.8 364 64.0
DCAR_020460 Daucus carota HOM05D005445 ORTHO05D007043 8.1e-108 394.8 319 64.6
Cc00_g00070 Coffea canephora HOM05D005445 ORTHO05D007043 1.1e-107 394.4 323 63.8
PGR142G0598 Punica granatum HOM05D005445 ORTHO05D007043 6.9e-107 391.7 300 70.0
CARHR118490 Cardamine hirsuta HOM05D005445 ORTHO05D007043 2.0e-106 390.2 300 66.7
THA.LOC104815270 Tarenaya hassleriana HOM05D005445 ORTHO05D007043 2.6e-106 389.8 302 66.9
Sp4g09300 Schrenkiella parvula HOM05D005445 ORTHO05D007043 9.9e-106 387.9 301 67.4
SalBow5G4362 Salvia bowleyana HOM05D005445 ORTHO05D007043 2.2e-105 386.7 324 65.4
Oeu028820.1 Olea europaea HOM05D005445 ORTHO05D007043 8.4e-105 384.8 300 67.7
AT2G26590 Arabidopsis thaliana HOM05D005445 ORTHO05D007043 1.9e-104 383.6 301 66.8
ECA234G2663 Erigeron canadensis HOM05D005445 ORTHO05D007043 4.2e-104 382.5 313 65.2
AL4G19530 Arabidopsis lyrata HOM05D005445 ORTHO05D007043 7.1e-104 381.7 301 65.8
Sed0003073 Sechium edule HOM05D005445 ORTHO05D007043 7.1e-104 381.7 296 69.3
BraA03t11899Z Brassica rapa HOM05D005445 ORTHO05D007043 9.3e-104 381.3 305 64.6
BcaB01g03027 Brassica carinata HOM05D005445 ORTHO05D007043 3.5e-103 379.4 300 65.7
BolC3t15563H Brassica oleracea HOM05D005445 ORTHO05D007043 4.6e-103 379.0 305 64.6
CDE06G0990 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 2.3e-102 376.7 319 64.3
BcaC01g04909 Brassica carinata HOM05D005445 ORTHO05D007043 3.0e-102 376.3 300 65.0
A03p26880 Brassica napus HOM05D005445 ORTHO05D007043 3.0e-102 376.3 319 62.4
C03p32210 Brassica napus HOM05D005445 ORTHO05D007043 2.5e-101 373.2 300 64.3
HPP92_028347 Vanilla planifolia HOM05D005445 ORTHO05D007043 7.4e-101 371.7 357 55.5
Aa31LG5G9140 Aethionema arabicum HOM05D005445 ORTHO05D007043 1.3e-100 370.9 308 62.3
Thhalv10000977m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 1.6e-100 370.5 295 66.1
Carub.0004s0844 Capsella rubella HOM05D005445 ORTHO05D007043 1.4e-99 367.5 297 63.3
Os05g0594800 Oryza sativa ssp. japonica HOM05D005445 ORTHO05D007043 1.8e-99 367.1 303 62.0
Lsat_1_v5_gn_5_80620 Lactuca sativa HOM05D005445 ORTHO05D007043 2.0e-98 363.6 307 64.2
ATR0626G233 Amborella trichopoda HOM05D005445 ORTHO05D007043 7.6e-98 361.7 370 56.8
PSO170G6081 Papaver somniferum HOM05D005445 ORTHO05D007043 7.6e-98 361.7 316 61.1
PSO063G4940 Papaver somniferum HOM05D005445 ORTHO05D007043 2.2e-97 360.1 316 59.5
HanXRQChr10g0309531 Helianthus annuus HOM05D005445 ORTHO05D007043 4.9e-97 359.0 292 66.1
Thhalv10016855m.g Eutrema salsugineum HOM05D005445 ORTHO05D007043 6.4e-97 358.6 359 57.9
Migut.L01918 Erythranthe guttata HOM05D005445 ORTHO05D007043 2.7e-95 353.2 299 62.9
Zm00001eb297230 Zea mays HOM05D005445 ORTHO05D007043 1.1e-93 347.8 316 59.8
Lj5C772G2 Lonicera japonica HOM05D005445 ORTHO05D007043 6.2e-92 342.0 267 66.3
Ah.10g032730 Amaranthus hybridus HOM05D005445 ORTHO05D007043 1.8e-91 340.5 319 58.3
AUR62027984 Chenopodium quinoa HOM05D005445 ORTHO05D007043 4.0e-91 339.3 348 56.0
Peaxi162Scf01184g00140 Petunia axillaris HOM05D005445 ORTHO05D007043 5.5e-88 328.9 339 54.0
EL10Ac2g03624 Beta vulgaris HOM05D005445 ORTHO05D007043 3.5e-87 326.2 346 55.2
vmacro20760 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.8e-86 323.9 364 51.4
SEGI_14233 Sequoiadendron giganteum HOM05D005445 ORTHO05D007043 2.5e-85 320.1 340 53.2
unitig_85.g27245 Utricularia gibba HOM05D005445 ORTHO05D007043 3.3e-85 319.7 297 58.9
AUR62020729 Chenopodium quinoa HOM05D005445 ORTHO05D007043 2.8e-84 316.6 317 56.2
Lalb_Chr05g0223811 Lupinus albus HOM05D005445 ORTHO05D007043 4.6e-79 299.3 243 67.9
Dinv26479 Davidia involucrata HOM05D005445 ORTHO05D007043 7.9e-71 271.9 223 68.2
Hma1.2p1_0314F.1_g122080 Hydrangea macrophylla HOM05D005445 ORTHO05D007043 1.3e-68 264.6 220 66.8
Pp3c21_370 Physcomitrium patens HOM05D005445 ORTHO05D007043 3.6e-63 246.5 319 43.9
Dinv00323 Davidia involucrata HOM05D005445 ORTHO05D007043 9.7e-61 238.4 195 68.7
COL.COLO4_23410 Corchorus olitorius HOM05D005445 ORTHO05D007043 3.7e-60 236.5 152 77.0
Sc14g0007060 Simmondsia chinensis HOM05D005445 ORTHO05D007043 2.4e-59 233.8 224 57.1
SMO116G0379 Selaginella moellendorffii HOM05D005445 ORTHO05D007043 7.7e-58 228.8 302 45.0
Haze_19097 Corylus avellana HOM05D005445 ORTHO05D007043 3.8e-57 226.5 202 64.4
Mapoly0011s0124 Marchantia polymorpha HOM05D005445 ORTHO05D007043 6.7e-54 215.7 306 42.5
CDE02G2220 Ceratophyllum demersum HOM05D005445 ORTHO05D007043 8.2e-52 208.8 227 56.4
CBR_g28055 Chara braunii HOM05D005445 ORTHO05D007043 8.2e-52 208.8 345 41.2
MD13G1232400 Malus domestica HOM05D005445 ORTHO05D007043 6.1e-39 166.0 169 60.9
Sc14g0006300 Simmondsia chinensis HOM05D005445 ORTHO05D007043 1.3e-28 131.7 121 57.9
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 1.3e-28 131.7 91 72.5
vmacro07726 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 4.9e-28 129.8 90 72.2
MCO02G027 Micromonas commoda HOM05D005445 ORTHO05D007043 5.0e-25 119.8 354 28.8
Lalb_Chr05g0223801 Lupinus albus HOM05D005445 ORTHO05D007043 3.1e-22 110.5 68 80.9
HPP92_015797 Vanilla planifolia HOM05D005445 ORTHO05D007043 4.0e-22 110.2 295 30.8
C03p32230 Brassica napus HOM05D005445 ORTHO05D007043 9.8e-21 105.5 103 59.2
BolC3t15564H Brassica oleracea HOM05D005445 ORTHO05D007043 9.8e-21 105.5 103 59.2
Cre11.g469450 Chlamydomonas reinhardtii HOM05D005445 ORTHO05D007043 2.2e-20 104.4 339 26.3
SHI03135 Sapria himalayana HOM05D005445 ORTHO05D007043 1.7e-17 94.7 52 86.5
SGA_v2.0_scaffold21G09605 Striga asiatica HOM05D005445 ORTHO05D007043 3.6e-15 87.0 91 51.6
HanXRQChr09g0248391 Helianthus annuus HOM05D005445 ORTHO05D007043 5.2e-14 83.2 82 57.3
HanXRQChr09g0242981 Helianthus annuus HOM05D005445 ORTHO05D007043 1.2e-13 82.0 82 56.1
HanXRQChr13g0395691 Helianthus annuus HOM05D005445 ORTHO05D007043 1.2e-13 82.0 82 56.1
vmacro04822 Vaccinium macrocarpon HOM05D005445 ORTHO05D007043 1.5e-13 81.6 43 86.0
HanXRQChr09g0246171 Helianthus annuus HOM05D005445 ORTHO05D007043 9.9e-13 79.0 79 57.0
Potri.003G027722 Populus trichocarpa HOM05D005445 ORTHO05D007043 1.4e-11 75.1 67 58.2
HanXRQChr09g0242991 Helianthus annuus HOM05D005445 ORTHO05D007043 3.5e-10 70.5 78 56.4
Potri.003G027520 Populus trichocarpa HOM05D005445 ORTHO05D007043 7.3e-08 62.8 45 71.1


User provided reference genes

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