Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN07G0775 Fragaria x ananassa HOM05D006564 ORTHO05D007772 4.3e-275 950.7 467 100.0
FAN17G1546 Fragaria x ananassa HOM05D006564 ORTHO05D007772 2.9e-207 725.3 389 93.3
FvH4_4g34230 Fragaria vesca HOM05D006564 ORTHO05D007772 6.1e-205 717.6 492 79.3
RcHm_v2.0_Chr4g0443691 Rosa chinensis HOM05D006564 ORTHO05D007772 5.8e-163 578.2 360 80.6
MD16G1094900 Malus domestica HOM05D006564 ORTHO05D007772 4.6e-144 515.4 487 58.5
Prupe.1G251700 Prunus persica HOM05D006564 ORTHO05D007772 7.4e-142 508.1 486 58.6
QL03p059806 Quercus lobata HOM05D006564 ORTHO05D007772 3.8e-122 442.6 504 51.6
Thecc.02G252200 Theobroma cacao HOM05D006564 ORTHO05D007772 2.2e-117 426.8 344 60.8
CANSAT01G1831 Cannabis sativa HOM05D006564 ORTHO05D007772 2.0e-115 420.2 484 50.6
Ciclev10033458m.g Citrus clementina HOM05D006564 ORTHO05D007772 1.0e-111 407.9 479 49.9
TAR622G0653 Trochodendron aralioides HOM05D006564 ORTHO05D007772 7.7e-107 391.7 502 46.0
Glyma.01G029900 Glycine max HOM05D006564 ORTHO05D007772 1.2e-104 384.4 475 47.8
Lj2g0026051 Lotus japonicus HOM05D006564 ORTHO05D007772 6.1e-104 382.1 478 47.5
Gorai.010G099700 Gossypium raimondii HOM05D006564 ORTHO05D007772 1.4e-103 380.9 497 46.7
Gohir.A06G086900 Gossypium hirsutum HOM05D006564 ORTHO05D007772 6.8e-103 378.6 487 46.8
Potri.010G041900 Populus trichocarpa HOM05D006564 ORTHO05D007772 1.2e-102 377.9 483 46.8
Gohir.D06G086400 Gossypium hirsutum HOM05D006564 ORTHO05D007772 1.5e-102 377.5 485 47.8
Haze_12197 Corylus avellana HOM05D006564 ORTHO05D007772 2.6e-102 376.7 478 47.5
Medtr5g034180 Medicago truncatula HOM05D006564 ORTHO05D007772 3.7e-101 372.9 489 47.9
Hma1.2p1_0536F.1_g173940 Hydrangea macrophylla HOM05D006564 ORTHO05D007772 6.3e-101 372.1 490 46.1
Psat2g104680 Pisum sativum HOM05D006564 ORTHO05D007772 2.4e-100 370.2 456 48.5
Dinv24837 Davidia involucrata HOM05D006564 ORTHO05D007772 7.0e-100 368.6 439 49.9
Atru.chr11.2047 Acer truncatum HOM05D006564 ORTHO05D007772 1.2e-99 367.9 486 46.9
CiPaw.05G152600 Carya illinoinensis HOM05D006564 ORTHO05D007772 5.9e-99 365.5 344 57.0
GSVIVG01013762001 Vitis vinifera HOM05D006564 ORTHO05D007772 3.8e-98 362.8 480 45.2
TPR.G21085 Trifolium pratense HOM05D006564 ORTHO05D007772 2.1e-96 357.1 479 46.1
arahy.Tifrunner.gnm1.ann1.T8BVJ1 Arachis hypogaea HOM05D006564 ORTHO05D007772 1.8e-95 354.0 471 45.2
Actinidia01701 Actinidia chinensis HOM05D006564 ORTHO05D007772 1.2e-94 351.3 350 54.0
arahy.Tifrunner.gnm1.ann1.FI0FWQ Arachis hypogaea HOM05D006564 ORTHO05D007772 3.1e-92 343.2 471 44.2
AL2G16230 Arabidopsis lyrata HOM05D006564 ORTHO05D007772 1.1e-89 334.7 476 42.6
PGR119G0202 Punica granatum HOM05D006564 ORTHO05D007772 1.5e-89 334.3 481 43.9
A01p29270 Brassica napus HOM05D006564 ORTHO05D007772 4.2e-89 332.8 481 41.2
TWI75G0104 Tripterygium wilfordii HOM05D006564 ORTHO05D007772 4.2e-89 332.8 479 45.1
Carub.0002s0487 Capsella rubella HOM05D006564 ORTHO05D007772 9.5e-89 331.6 491 41.5
BraA01t03060Z Brassica rapa HOM05D006564 ORTHO05D007772 1.6e-88 330.9 481 41.6
BcaC09g49405 Brassica carinata HOM05D006564 ORTHO05D007772 2.1e-88 330.5 480 41.2
C01p37040 Brassica napus HOM05D006564 ORTHO05D007772 3.6e-88 329.7 480 41.2
Sp2g04270 Schrenkiella parvula HOM05D006564 ORTHO05D007772 4.7e-88 329.3 478 42.5
CARHR052570 Cardamine hirsuta HOM05D006564 ORTHO05D007772 1.0e-87 328.2 489 41.3
BolC1t03666H Brassica oleracea HOM05D006564 ORTHO05D007772 1.5e-86 324.3 480 41.2
THA.LOC104827560 Tarenaya hassleriana HOM05D006564 ORTHO05D007772 2.0e-86 323.9 481 41.4
AT1G60460 Arabidopsis thaliana HOM05D006564 ORTHO05D007772 1.3e-85 321.2 475 41.1
Nn3g16844 Nelumbo nucifera HOM05D006564 ORTHO05D007772 1.3e-85 321.2 493 40.6
VMungo1215G0480 Vigna mungo HOM05D006564 ORTHO05D007772 1.7e-85 320.9 477 43.6
Aqoxy3G02914 Aquilegia oxysepala HOM05D006564 ORTHO05D007772 5.4e-84 315.8 484 41.1
Thhalv10023451m.g Eutrema salsugineum HOM05D006564 ORTHO05D007772 5.4e-84 315.8 475 40.6
Lalb_Chr05g0216821 Lupinus albus HOM05D006564 ORTHO05D007772 1.0e-82 311.6 362 49.2
MBI16_g27088_MAGBIO Magnolia biondii HOM05D006564 ORTHO05D007772 6.6e-82 308.9 503 39.6
BcaB04g20267 Brassica carinata HOM05D006564 ORTHO05D007772 1.6e-80 304.3 517 39.8
Sed0020482 Sechium edule HOM05D006564 ORTHO05D007772 1.6e-80 304.3 490 41.4
COL.COLO4_24191 Corchorus olitorius HOM05D006564 ORTHO05D007772 3.4e-78 296.6 472 41.1
Migut.E00581 Erythranthe guttata HOM05D006564 ORTHO05D007772 7.5e-78 295.4 474 42.6
Rhsim12G0044200 Rhododendron simsii HOM05D006564 ORTHO05D007772 2.2e-77 293.9 493 39.4
Aa31LG2G9990 Aethionema arabicum HOM05D006564 ORTHO05D007772 4.1e-76 289.7 484 37.8
ECA234G3669 Erigeron canadensis HOM05D006564 ORTHO05D007772 3.5e-75 286.6 510 35.7
PSO832G2728 Papaver somniferum HOM05D006564 ORTHO05D007772 7.3e-73 278.9 481 37.4
CsaV3_2G024630 Cucumis sativus L. HOM05D006564 ORTHO05D007772 1.2e-72 278.1 491 38.9
EL10Ac6g13691 Beta vulgaris HOM05D006564 ORTHO05D007772 2.0e-70 270.8 496 38.5
Cfa009164 Carpinus fangiana HOM05D006564 ORTHO05D007772 9.8e-70 268.5 364 45.3
MELO3C010665.2 Cucumis melo HOM05D006564 ORTHO05D007772 1.4e-68 264.6 503 37.4
Phvul.002G070600 Phaseolus vulgaris HOM05D006564 ORTHO05D007772 1.4e-68 264.6 496 37.5
Manes.13G029100 Manihot esculenta HOM05D006564 ORTHO05D007772 9.2e-68 261.9 378 42.6
ClCG08G017970 Citrullus lanatus HOM05D006564 ORTHO05D007772 1.0e-66 258.5 554 35.0
PSO063G0329 Papaver somniferum HOM05D006564 ORTHO05D007772 1.3e-66 258.1 490 36.3
Solyc06g065620.2 Solanum lycopersicum HOM05D006564 ORTHO05D007772 7.3e-65 252.3 500 36.0
SalBow1G6981 Salvia bowleyana HOM05D006564 ORTHO05D007772 3.6e-64 250.0 478 37.4
Nitab4.5_0004611g0020 Nicotiana tabacum HOM05D006564 ORTHO05D007772 8.1e-64 248.8 485 37.1
Peaxi162Scf00075g02124 Petunia axillaris HOM05D006564 ORTHO05D007772 1.2e-62 245.0 476 35.7
Oeu056406.1 Olea europaea HOM05D006564 ORTHO05D007772 2.3e-58 230.7 388 38.1
SGA_v2.0_scaffold276G46631 Striga asiatica HOM05D006564 ORTHO05D007772 5.6e-57 226.1 451 35.7
Sabra10G0025500 Salix brachista HOM05D006564 ORTHO05D007772 9.6e-57 225.3 461 36.0
Cc11_g15240 Coffea canephora HOM05D006564 ORTHO05D007772 2.1e-56 224.2 458 34.9
Migut.E00617 Erythranthe guttata HOM05D006564 ORTHO05D007772 4.7e-56 223.0 251 49.0
AUR62014056 Chenopodium quinoa HOM05D006564 ORTHO05D007772 5.8e-54 216.1 469 36.0
Lsat_1_v5_gn_4_5380 Lactuca sativa HOM05D006564 ORTHO05D007772 5.4e-52 209.5 369 37.9
AUR62005394 Chenopodium quinoa HOM05D006564 ORTHO05D007772 9.3e-52 208.8 489 34.2
Sopen06g024060 Solanum pennellii HOM05D006564 ORTHO05D007772 3.3e-49 200.3 268 41.8
Lj3A1053G47 Lonicera japonica HOM05D006564 ORTHO05D007772 1.2e-46 191.8 194 50.5
Glyma.02G035501 Glycine max HOM05D006564 ORTHO05D007772 3.4e-46 190.3 152 62.5
Hund06003 Selenicereus undatus HOM05D006564 ORTHO05D007772 2.9e-45 187.2 338 38.5
Cpa.g.sc69.59 Carica papaya HOM05D006564 ORTHO05D007772 9.6e-33 145.6 138 56.5
HanXRQChr12g0383581 Helianthus annuus HOM05D006564 ORTHO05D007772 2.1e-32 144.4 182 43.4
Sc04g0009220 Simmondsia chinensis HOM05D006564 ORTHO05D007772 7.6e-30 136.0 174 43.7
Ca_03150_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 4.2e-28 130.2 217 41.9
FAN22G1362 Fragaria x ananassa HOM05D006564 ORTHO05D007772 1.6e-27 128.3 66 95.5
Hund06002 Selenicereus undatus HOM05D006564 ORTHO05D007772 2.1e-27 127.9 143 49.0
unitig_744.g23977 Utricularia gibba HOM05D006564 ORTHO05D007772 3.1e-23 114.0 492 26.6
FvH4_4g34180 Fragaria vesca HOM05D006564 ORTHO05D007772 2.2e-21 107.8 66 80.3
RcHm_v2.0_Chr4g0443681 Rosa chinensis HOM05D006564 ORTHO05D007772 5.0e-21 106.7 66 80.3
SHI17545 Sapria himalayana HOM05D006564 ORTHO05D007772 5.0e-21 106.7 108 49.1
HPP92_021828 Vanilla planifolia HOM05D006564 ORTHO05D007772 5.0e-21 106.7 240 33.3
FAN12G0482 Fragaria x ananassa HOM05D006564 ORTHO05D007772 7.2e-20 102.8 66 80.3
Zm00001eb227420 Zea mays HOM05D006564 ORTHO05D007772 3.7e-16 90.5 256 32.8
Ca_03152_v3 Cicer arietinum L. HOM05D006564 ORTHO05D007772 6.3e-16 89.7 83 54.2
PGSC0003DMG401026086 Solanum tuberosum HOM05D006564 ORTHO05D007772 3.1e-15 87.4 315 27.9
CDE07G0681 Ceratophyllum demersum HOM05D006564 ORTHO05D007772 1.2e-14 85.5 149 35.6
SHI17547 Sapria himalayana HOM05D006564 ORTHO05D007772 2.6e-14 84.3 67 52.2
HanXRQChr12g0383591 Helianthus annuus HOM05D006564 ORTHO05D007772 3.4e-14 84.0 85 50.6
Mapoly0088s0064 Marchantia polymorpha HOM05D006564 ORTHO05D007772 6.5e-13 79.7 366 23.5
Os06g0708200 Oryza sativa ssp. japonica HOM05D006564 ORTHO05D007772 1.1e-12 79.0 116 42.2
Migut.E00618 Erythranthe guttata HOM05D006564 ORTHO05D007772 1.9e-12 78.2 74 55.4
Gohir.D06G182100 Gossypium hirsutum HOM05D006564 ORTHO05D007772 1.2e-11 75.5 62 58.1
SEGI_21655 Sequoiadendron giganteum HOM05D006564 ORTHO05D007772 2.1e-11 74.7 159 30.8
Nitab4.5_0003128g0060 Nicotiana tabacum HOM05D006564 ORTHO05D007772 1.0e-10 72.4 189 32.8
Gohir.1Z049603 Gossypium hirsutum HOM05D006564 ORTHO05D007772 3.3e-09 67.4 51 62.7
Lj3A1053T43 Lonicera japonica HOM05D006564 ORTHO05D007772 8.2e-08 62.8 64 51.6
Eucgr.H02586 Eucalyptus grandis HOM05D006564 ORTHO05D007772 1.2e-06 58.9 65 47.7


User provided reference genes

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