Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4793 Fragaria x ananassa HOM05D002696 ORTHO05D019089 3.0e-59 231.9 137 100.0
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.5e-58 229.6 137 89.8
FvH4_7g27601 Fragaria vesca HOM05D002696 ORTHO05D019089 3.3e-58 228.4 136 89.7
FvH4_7g27644 Fragaria vesca HOM05D002696 ORTHO05D003940 1.9e-53 212.6 136 93.4
FvH4_7g27690 Fragaria vesca HOM05D002696 ORTHO05D019089 1.9e-53 212.6 136 93.4
FAN01G1209 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.9e-53 212.6 136 93.4
FAN06G1338 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.9e-53 212.6 136 93.4
FvH4_7g25682 Fragaria vesca HOM05D002696 ORTHO05D003940 3.2e-53 211.8 136 93.4
FvH4_7g27370 Fragaria vesca HOM05D002696 ORTHO05D003940 9.3e-53 210.3 136 93.4
FAN06G3257 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.1e-52 209.1 136 92.6
FAN03G1522 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.3e-51 206.5 136 91.2
RcHm_v2.0_Chr1g0374201 Rosa chinensis HOM05D002696 ORTHO05D003940 3.9e-51 204.9 136 91.2
FAN06G1128 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.2e-49 199.1 136 89.0
FAN06G1881 Fragaria x ananassa HOM05D002696 ORTHO05D003940 5.9e-47 191.0 136 77.9
FAN06G0900 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.2e-46 189.1 124 91.9
MD07G1252800 Malus domestica HOM05D002696 ORTHO05D003940 7.2e-45 184.1 134 73.9
MD01G1182300 Malus domestica HOM05D002696 ORTHO05D003940 2.1e-44 182.6 133 75.2
Prupe.2G276400 Prunus persica HOM05D002696 ORTHO05D003940 2.3e-43 179.1 134 72.4
Cfa008155 Carpinus fangiana HOM05D002696 ORTHO05D003940 1.1e-42 176.8 133 72.2
QL09p005526 Quercus lobata HOM05D002696 ORTHO05D003940 2.0e-42 176.0 134 70.9
QL09p005648 Quercus lobata HOM05D002696 ORTHO05D003940 2.5e-42 175.6 134 70.9
CANSAT56G0989 Cannabis sativa HOM05D002696 ORTHO05D003940 5.7e-42 174.5 134 68.7
CiPaw.04G059400 Carya illinoinensis HOM05D002696 ORTHO05D003940 7.4e-42 174.1 134 69.4
Potri.003G108400 Populus trichocarpa HOM05D002696 ORTHO05D003940 1.1e-40 170.2 134 66.4
CSS0019414 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 4.1e-40 168.3 134 70.1
CSS0021515 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 4.1e-40 168.3 134 70.1
Haze_13890 Corylus avellana HOM05D002696 ORTHO05D003940 4.1e-40 168.3 150 64.7
FAN06G0680 Fragaria x ananassa HOM05D002696 ORTHO05D019089 9.1e-40 167.2 93 94.6
Atru.chr8.1045 Acer truncatum HOM05D002696 ORTHO05D003940 2.6e-39 165.6 133 66.9
GSVIVG01018715001 Vitis vinifera HOM05D002696 ORTHO05D003940 7.7e-39 164.1 134 67.2
Lj1A979T80 Lonicera japonica HOM05D002696 ORTHO05D003940 1.7e-38 162.9 134 67.2
Dinv06564 Davidia involucrata HOM05D002696 ORTHO05D003940 2.2e-38 162.5 134 67.9
arahy.Tifrunner.gnm1.ann1.BTDY3I Arachis hypogaea HOM05D002696 ORTHO05D003940 3.8e-38 161.8 134 64.9
Manes.14G036500 Manihot esculenta HOM05D002696 ORTHO05D003940 3.8e-38 161.8 133 64.7
FAN06G4118 Fragaria x ananassa HOM05D002696 ORTHO05D003940 6.5e-38 161.0 133 71.4
FvH4_7g27350 Fragaria vesca HOM05D002696 ORTHO05D003940 1.4e-37 159.8 136 77.9
PGR042G0896 Punica granatum HOM05D002696 ORTHO05D003940 1.4e-37 159.8 133 65.4
Lj3g0024722 Lotus japonicus HOM05D002696 ORTHO05D003940 2.5e-37 159.1 134 66.4
Rhsim03G0166400 Rhododendron simsii HOM05D002696 ORTHO05D003940 2.5e-37 159.1 134 65.7
Ca_23897_v3 Cicer arietinum L. HOM05D002696 ORTHO05D003940 3.2e-37 158.7 134 65.7
Eucgr.A02895 Eucalyptus grandis HOM05D002696 ORTHO05D003940 3.2e-37 158.7 133 63.2
FAN10G0424 Fragaria x ananassa HOM05D002696 ORTHO05D003940 4.2e-37 158.3 133 70.7
Potri.001G125000 Populus trichocarpa HOM05D002696 ORTHO05D003940 4.2e-37 158.3 134 64.2
arahy.Tifrunner.gnm1.ann1.P8M8R5 Arachis hypogaea HOM05D002696 ORTHO05D003940 7.2e-37 157.5 129 65.9
Sed0008600 Sechium edule HOM05D002696 ORTHO05D003940 7.2e-37 157.5 133 65.4
Lalb_Chr03g0034121 Lupinus albus HOM05D002696 ORTHO05D003940 1.6e-36 156.4 134 64.2
Ciclev10004183m.g Citrus clementina HOM05D002696 ORTHO05D003940 2.1e-36 156.0 133 64.7
TAR633G1694 Trochodendron aralioides HOM05D002696 ORTHO05D003940 2.7e-36 155.6 133 65.4
Atru.chr1.739 Acer truncatum HOM05D002696 ORTHO05D003940 3.6e-36 155.2 133 63.2
CAN.G48.39 Capsicum annuum HOM05D002696 ORTHO05D003940 3.6e-36 155.2 134 63.4
FAN03G1343 Fragaria x ananassa HOM05D002696 ORTHO05D003940 4.7e-36 154.8 136 75.0
Nn4g25061 Nelumbo nucifera HOM05D002696 ORTHO05D003940 4.7e-36 154.8 134 61.9
Thecc.03G154800 Theobroma cacao HOM05D002696 ORTHO05D003940 7.9e-36 154.1 134 63.4
FAN10G3229 Fragaria x ananassa HOM05D007222 ORTHO05D010132 1.0e-35 153.7 136 76.5
COL.COLO4_14108 Corchorus olitorius HOM05D002696 ORTHO05D003940 1.4e-35 153.3 133 63.2
MBI15_g05590_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 1.4e-35 153.3 132 65.2
Oeu022477.1 Olea europaea HOM05D002696 ORTHO05D003940 1.4e-35 153.3 134 64.2
CSS0022672 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 2.3e-35 152.5 134 64.2
Duzib205G1343 Durio zibethinus HOM05D002696 ORTHO05D003940 2.3e-35 152.5 134 61.9
DCAR_020185 Daucus carota HOM05D002696 ORTHO05D003940 3.9e-35 151.8 133 62.4
TPR.G1877 Trifolium pratense HOM05D002696 ORTHO05D003940 5.1e-35 151.4 126 65.9
Migut.F00482 Erythranthe guttata HOM05D002696 ORTHO05D003940 6.7e-35 151.0 134 63.4
PSO339G0313 Papaver somniferum HOM05D002696 ORTHO05D003940 1.1e-34 150.2 130 62.3
Sopen03g024050 Solanum pennellii HOM05D002696 ORTHO05D003940 1.5e-34 149.8 133 62.4
MELO3C006807.2 Cucumis melo HOM05D002696 ORTHO05D003940 2.6e-34 149.1 136 61.8
Nitab4.5_0003490g0070 Nicotiana tabacum HOM05D002696 ORTHO05D003940 2.6e-34 149.1 133 62.4
FAN10G2221 Fragaria x ananassa HOM05D005822 ORTHO05D007267 3.3e-34 148.7 100 85.0
PSO384G2493 Papaver somniferum HOM05D002696 ORTHO05D003940 3.3e-34 148.7 130 61.5
CARHR276190 Cardamine hirsuta HOM05D002696 ORTHO05D003940 5.7e-34 147.9 134 59.0
Solyc03g093260.3 Solanum lycopersicum HOM05D002696 ORTHO05D003940 5.7e-34 147.9 133 61.7
VMungo1127G1101 Vigna mungo HOM05D002696 ORTHO05D003940 5.7e-34 147.9 134 61.2
Dinv28583 Davidia involucrata HOM05D002696 ORTHO05D019089 7.4e-34 147.5 134 64.2
Cpa.g.sc3.331 Carica papaya HOM05D002696 ORTHO05D003940 9.7e-34 147.1 133 60.9
Sabra01G0096100 Salix brachista HOM05D002696 ORTHO05D003940 1.3e-33 146.7 123 64.2
Aqoxy2G00559 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 1.7e-33 146.4 134 56.7
Glyma.13G202100 Glycine max HOM05D002696 ORTHO05D003940 1.7e-33 146.4 125 64.0
Medtr8g037325 Medicago truncatula HOM05D002696 ORTHO05D003940 1.7e-33 146.4 127 63.0
Gohir.A03G059100 Gossypium hirsutum HOM05D002696 ORTHO05D003940 2.8e-33 145.6 134 59.7
Gohir.D03G107000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 2.8e-33 145.6 134 59.7
Gorai.003G113400 Gossypium raimondii HOM05D002696 ORTHO05D003940 2.8e-33 145.6 134 59.7
PSO423G0248 Papaver somniferum HOM05D002696 ORTHO05D003940 2.8e-33 145.6 133 60.2
SGA_v2.0_scaffold2G01216 Striga asiatica HOM05D002696 ORTHO05D003940 2.8e-33 145.6 133 62.4
Phvul.011G211100 Phaseolus vulgaris HOM05D002696 ORTHO05D003940 3.7e-33 145.2 134 60.4
Sc10g0002620 Simmondsia chinensis HOM05D002696 ORTHO05D003940 4.8e-33 144.8 136 58.8
THA.LOC104818260 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 8.2e-33 144.1 127 61.4
Glyma.12G236600 Glycine max HOM05D002696 ORTHO05D003940 2.4e-32 142.5 125 61.6
vmacro06809 Vaccinium macrocarpon HOM05D002696 ORTHO05D003940 3.1e-32 142.1 134 60.4
Carub.0008s2309 Capsella rubella HOM05D002696 ORTHO05D003940 4.1e-32 141.7 134 58.2
Hund13894 Selenicereus undatus HOM05D002696 ORTHO05D003940 5.3e-32 141.4 130 58.5
ECA234G3187 Erigeron canadensis HOM05D002696 ORTHO05D003940 9.1e-32 140.6 132 58.3
Peaxi162Scf00241g00034 Petunia axillaris HOM05D002696 ORTHO05D003940 9.1e-32 140.6 123 63.4
Lsat_1_v5_gn_8_8781 Lactuca sativa HOM05D002696 ORTHO05D003940 1.5e-31 139.8 128 60.9
TAR633G0051 Trochodendron aralioides HOM05D002696 ORTHO05D003940 1.5e-31 139.8 118 65.3
Duzib068G1251 Durio zibethinus HOM05D002696 ORTHO05D003940 2.0e-31 139.4 125 61.6
ATR0618G100 Amborella trichopoda HOM05D002696 ORTHO05D003940 3.5e-31 138.7 134 56.7
HanXRQChr05g0144341 Helianthus annuus HOM05D002696 ORTHO05D003940 5.9e-31 137.9 133 58.6
Nitab4.5_0002816g0060 Nicotiana tabacum HOM05D002696 ORTHO05D003940 1.7e-30 136.3 133 59.4
Sp2g25590 Schrenkiella parvula HOM05D002696 ORTHO05D003940 5.0e-30 134.8 134 64.2
THA.LOC104821413 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 8.5e-30 134.0 122 58.2
ClCG05G007340 Citrullus lanatus HOM05D002696 ORTHO05D003940 1.1e-29 133.7 166 50.6
CsaV3_3G016100 Cucumis sativus L. HOM05D002696 ORTHO05D003940 1.1e-29 133.7 136 57.4
Ah.16g103870 Amaranthus hybridus HOM05D002696 ORTHO05D003940 1.4e-29 133.3 134 54.5
Zm00001eb144310 Zea mays HOM05D002696 ORTHO05D003940 1.4e-29 133.3 134 55.2
Lalb_Chr01g0008021 Lupinus albus HOM05D002696 ORTHO05D003940 3.2e-29 132.1 124 58.9
AUR62012301 Chenopodium quinoa HOM05D002696 ORTHO05D003940 4.2e-29 131.7 134 54.5
FAN06G4003 Fragaria x ananassa HOM05D002696 ORTHO05D003940 4.2e-29 131.7 100 75.0
AT5G62410 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 5.5e-29 131.3 125 56.8
Psat4g148760 Pisum sativum HOM05D002696 ORTHO05D003940 5.5e-29 131.3 114 62.3
EL10Ac2g04892 Beta vulgaris HOM05D002696 ORTHO05D003940 7.2e-29 131.0 130 55.4
CDE12G0096 Ceratophyllum demersum HOM05D002696 ORTHO05D003940 1.2e-28 130.2 133 54.9
Os01g0904400 Oryza sativa ssp. japonica HOM05D002696 ORTHO05D003940 1.2e-28 130.2 125 57.6
AUR62022940 Chenopodium quinoa HOM05D002696 ORTHO05D003940 1.6e-28 129.8 134 53.7
HanXRQChr08g0223041 Helianthus annuus HOM05D002696 ORTHO05D003940 1.6e-28 129.8 133 54.9
HPP92_013639 Vanilla planifolia HOM05D002696 ORTHO05D003940 3.6e-28 128.6 134 55.2
Aqoxy7G02846 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 8.0e-28 127.5 133 51.1
AL8G39240 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 8.0e-28 127.5 134 56.7
MSTRG.8828 Avicennia marina HOM05D002696 ORTHO05D003940 1.0e-27 127.1 119 58.0
Aa31LG4G16260 Aethionema arabicum HOM05D002696 ORTHO05D003940 1.4e-27 126.7 114 59.6
BcaB02g09643 Brassica carinata HOM05D002696 ORTHO05D003940 1.4e-27 126.7 134 57.5
CSS0036675 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.4e-27 126.7 129 58.1
BolC3t18703H Brassica oleracea HOM05D002696 ORTHO05D003940 3.9e-27 125.2 134 53.7
BcaC01g02465 Brassica carinata HOM05D002696 ORTHO05D003940 6.7e-27 124.4 134 59.0
A06p29110 Brassica napus HOM05D002696 ORTHO05D003940 6.7e-27 124.4 134 59.0
C03p64490 Brassica napus HOM05D002696 ORTHO05D003940 6.7e-27 124.4 134 59.0
BraA06t25859Z Brassica rapa HOM05D002696 ORTHO05D003940 6.7e-27 124.4 134 59.0
Carub.0005s1355 Capsella rubella HOM05D002696 ORTHO05D003940 6.7e-27 124.4 114 57.0
BraA06t25103Z Brassica rapa HOM05D002696 ORTHO05D003940 1.1e-26 123.6 120 55.0
CARHR156100 Cardamine hirsuta HOM05D002696 ORTHO05D003940 1.5e-26 123.2 120 55.8
SalBow8G1580 Salvia bowleyana HOM05D002696 ORTHO05D003940 2.0e-26 122.9 133 51.9
Thhalv10010077m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 4.4e-26 121.7 114 57.9
Actinidia20692 Actinidia chinensis HOM05D002696 ORTHO05D003940 7.4e-26 120.9 94 69.1
BcaC01g01822 Brassica carinata HOM05D002696 ORTHO05D003940 9.7e-26 120.6 120 55.0
C03p71600 Brassica napus HOM05D002696 ORTHO05D003940 9.7e-26 120.6 119 55.5
BolC3t19451H Brassica oleracea HOM05D002696 ORTHO05D003940 9.7e-26 120.6 120 55.0
Thhalv10003541m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 9.7e-26 120.6 124 56.5
SEGI_28050 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 2.2e-25 119.4 129 51.2
AT3G47460 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 3.7e-25 118.6 114 55.3
A06p20190 Brassica napus HOM05D002696 ORTHO05D003940 3.7e-25 118.6 114 56.1
FvH4_7g28372 Fragaria vesca HOM05D002696 ORTHO05D023279 8.2e-25 117.5 132 56.8
Sp5g14420 Schrenkiella parvula HOM05D002696 ORTHO05D003940 2.4e-24 115.9 114 55.3
BcaB01g00921 Brassica carinata HOM05D002696 ORTHO05D003940 3.1e-24 115.5 114 55.3
AL5G26680 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 4.1e-24 115.2 113 54.0
Cc06_g23360 Coffea canephora HOM05D002696 ORTHO05D003940 4.1e-24 115.2 109 59.6
Pp3c13_8840 Physcomitrium patens HOM05D002696 ORTHO05D003940 7.0e-24 114.4 130 47.7
SMO076G0001 Selaginella moellendorffii HOM05D002696 ORTHO05D003940 2.0e-23 112.8 133 45.1
SGA_v2.0_scaffold44G16551 Striga asiatica HOM05D002696 ORTHO05D003940 3.5e-23 112.1 104 59.6
SEGI_01462 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 5.9e-23 111.3 128 49.2
FAN06G0913 Fragaria x ananassa HOM05D002696 ORTHO05D019089 1.0e-22 110.5 65 89.2
Mapoly0005s0174 Marchantia polymorpha HOM05D002696 ORTHO05D003940 1.4e-19 100.1 132 41.7
FAN06G2222 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.0e-19 99.0 79 81.0
AagrBONN_evm.TU.Sc2ySwM_344.3408 Anthoceros agrestis HOM05D002696 ORTHO05D003940 1.5e-18 96.7 133 41.4
FAN06G3863 Fragaria x ananassa HOM05D002696 ORTHO05D011600 2.7e-15 85.9 48 91.7
Gorai.001G049100 Gossypium raimondii HOM05D002696 ORTHO05D003940 7.7e-15 84.3 136 41.9
Dinv28586 Davidia involucrata HOM05D002696 ORTHO05D019089 1.3e-14 83.6 63 74.6
Gohir.A07G041900 Gossypium hirsutum HOM05D002696 ORTHO05D003940 6.5e-14 81.3 96 50.0
SGA_v2.0_scaffold46G17417 Striga asiatica HOM05D002696 ORTHO05D019089 8.5e-14 80.9 99 51.5
Gohir.D07G046000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 1.5e-13 80.1 96 50.0
SEGI_38350 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 1.8e-11 73.2 114 38.6
FAN10G0261 Fragaria x ananassa HOM05D000009 ORTHO05D007267 8.8e-11 70.9 48 77.1
CBR_g40808 Chara braunii HOM05D002696 ORTHO05D003940 5.7e-10 68.2 131 35.9


User provided reference genes

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