Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G4022 Fragaria x ananassa HOM05D002696 ORTHO05D028961 1.1e-101 373.6 245 100.0
FvH4_7g27370 Fragaria vesca HOM05D002696 ORTHO05D003940 1.8e-83 313.2 244 84.8
FvH4_7g25682 Fragaria vesca HOM05D002696 ORTHO05D003940 2.4e-83 312.8 244 84.8
FAN06G2222 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.4e-83 312.8 213 100.0
FAN06G3257 Fragaria x ananassa HOM05D002696 ORTHO05D003940 5.3e-83 311.6 244 84.4
FAN01G1209 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.4e-82 308.9 244 84.0
FvH4_7g27350 Fragaria vesca HOM05D002696 ORTHO05D003940 7.2e-80 301.2 209 95.2
RcHm_v2.0_Chr1g0374201 Rosa chinensis HOM05D002696 ORTHO05D003940 1.6e-79 300.1 244 85.2
FAN06G1881 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.7e-79 299.3 244 82.8
FAN06G4003 Fragaria x ananassa HOM05D002696 ORTHO05D003940 5.2e-78 295.0 252 71.0
MD07G1252800 Malus domestica HOM05D002696 ORTHO05D003940 2.6e-61 239.6 244 61.1
MD01G1182300 Malus domestica HOM05D002696 ORTHO05D003940 2.8e-60 236.1 244 71.3
FvH4_7g28371 Fragaria vesca HOM05D002696 ORTHO05D003940 4.8e-60 235.3 244 60.7
FAN03G1343 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.2e-56 222.6 244 72.5
FAN03G1522 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.2e-56 222.6 244 72.5
CiPaw.04G059400 Carya illinoinensis HOM05D002696 ORTHO05D003940 1.2e-55 220.7 243 58.4
FAN06G1338 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.2e-55 220.7 187 69.0
FvH4_7g27644 Fragaria vesca HOM05D002696 ORTHO05D003940 1.6e-55 220.3 209 64.1
Ciclev10004183m.g Citrus clementina HOM05D002696 ORTHO05D003940 8.0e-55 218.0 240 54.6
Medtr8g037325 Medicago truncatula HOM05D002696 ORTHO05D003940 8.8e-54 214.5 240 67.5
Potri.001G125000 Populus trichocarpa HOM05D002696 ORTHO05D003940 1.5e-53 213.8 244 52.5
Manes.14G036500 Manihot esculenta HOM05D002696 ORTHO05D003940 2.8e-52 209.5 243 57.6
Potri.003G108400 Populus trichocarpa HOM05D002696 ORTHO05D003940 3.7e-52 209.1 244 51.6
ClCG05G007340 Citrullus lanatus HOM05D002696 ORTHO05D003940 2.4e-51 206.5 244 50.0
FAN06G1128 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.1e-51 206.1 235 71.1
FAN10G0424 Fragaria x ananassa HOM05D002696 ORTHO05D003940 5.4e-51 205.3 244 61.9
MELO3C006807.2 Cucumis melo HOM05D002696 ORTHO05D003940 9.2e-51 204.5 244 49.6
Nn4g25061 Nelumbo nucifera HOM05D002696 ORTHO05D003940 1.7e-49 200.3 244 56.6
FAN06G4118 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.3e-49 199.9 244 54.1
DCAR_020185 Daucus carota HOM05D002696 ORTHO05D003940 2.9e-49 199.5 244 60.2
Sabra01G0096100 Salix brachista HOM05D002696 ORTHO05D003940 2.9e-49 199.5 244 55.7
Cc06_g23360 Coffea canephora HOM05D002696 ORTHO05D003940 1.5e-48 197.2 244 48.0
Prupe.2G276400 Prunus persica HOM05D002696 ORTHO05D003940 2.5e-48 196.4 243 65.0
TPR.G1877 Trifolium pratense HOM05D002696 ORTHO05D003940 2.5e-48 196.4 240 64.6
PSO384G2493 Papaver somniferum HOM05D002696 ORTHO05D003940 4.3e-48 195.7 244 46.7
Sed0008600 Sechium edule HOM05D002696 ORTHO05D003940 6.1e-47 191.8 244 46.3
CANSAT56G0989 Cannabis sativa HOM05D002696 ORTHO05D003940 8.0e-47 191.4 244 64.3
Gohir.D03G107000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 1.0e-46 191.0 240 60.0
Migut.F00482 Erythranthe guttata HOM05D002696 ORTHO05D003940 1.4e-46 190.7 244 47.5
Lalb_Chr01g0008031 Lupinus albus HOM05D002696 ORTHO05D003940 1.4e-46 190.7 243 48.1
Gohir.A07G041900 Gossypium hirsutum HOM05D002696 ORTHO05D003940 1.8e-46 190.3 240 53.3
Gorai.003G113400 Gossypium raimondii HOM05D002696 ORTHO05D003940 2.3e-46 189.9 240 47.1
PSO423G0248 Papaver somniferum HOM05D002696 ORTHO05D003940 2.3e-46 189.9 244 46.3
Gohir.A03G059100 Gossypium hirsutum HOM05D002696 ORTHO05D003940 5.2e-46 188.7 240 48.3
SGA_v2.0_scaffold44G16551 Striga asiatica HOM05D002696 ORTHO05D003940 5.2e-46 188.7 244 49.2
Thhalv10010077m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 1.2e-45 187.6 243 56.0
FAN06G4966 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.0e-45 186.8 209 57.4
QL09p005648 Quercus lobata HOM05D002696 ORTHO05D003940 3.4e-45 186.0 244 63.9
Glyma.12G236600 Glycine max HOM05D002696 ORTHO05D003940 5.7e-45 185.3 240 50.0
Lj3g0024722 Lotus japonicus HOM05D002696 ORTHO05D003940 9.8e-45 184.5 243 62.1
VMungo1127G1101 Vigna mungo HOM05D002696 ORTHO05D003940 9.8e-45 184.5 243 60.5
Eucgr.A02895 Eucalyptus grandis HOM05D002696 ORTHO05D003940 1.3e-44 184.1 244 46.7
MBI08_g12687_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 1.3e-44 184.1 247 47.0
Rhsim03G0166400 Rhododendron simsii HOM05D002696 ORTHO05D003940 1.3e-44 184.1 244 57.0
Cfa008155 Carpinus fangiana HOM05D002696 ORTHO05D003940 1.7e-44 183.7 243 63.8
Haze_13890 Corylus avellana HOM05D002696 ORTHO05D003940 2.2e-44 183.3 243 63.8
Sc10g0002620 Simmondsia chinensis HOM05D002696 ORTHO05D003940 2.2e-44 183.3 244 44.3
Psat4g148760 Pisum sativum HOM05D002696 ORTHO05D003940 6.4e-44 181.8 239 63.2
EL10Ac2g04892 Beta vulgaris HOM05D002696 ORTHO05D003940 8.3e-44 181.4 247 45.7
CARHR276190 Cardamine hirsuta HOM05D002696 ORTHO05D003940 8.3e-44 181.4 243 46.9
Duzib068G1251 Durio zibethinus HOM05D002696 ORTHO05D003940 8.3e-44 181.4 240 46.2
AL8G39240 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 4.1e-43 179.1 234 47.4
BolC3t18703H Brassica oleracea HOM05D002696 ORTHO05D003940 5.4e-43 178.7 240 62.9
THA.LOC104821413 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 5.4e-43 178.7 242 52.5
Atru.chr1.739 Acer truncatum HOM05D002696 ORTHO05D003940 7.0e-43 178.3 240 63.8
Nitab4.5_0003490g0070 Nicotiana tabacum HOM05D002696 ORTHO05D003940 7.0e-43 178.3 244 60.7
Ca_23897_v3 Cicer arietinum L. HOM05D002696 ORTHO05D003940 9.2e-43 177.9 231 63.2
Zm00001eb144310 Zea mays HOM05D002696 ORTHO05D003940 2.0e-42 176.8 244 42.6
BcaB01g00921 Brassica carinata HOM05D002696 ORTHO05D003940 2.7e-42 176.4 243 57.6
CAN.G48.39 Capsicum annuum HOM05D002696 ORTHO05D003940 4.6e-42 175.6 208 55.3
PGR042G0896 Punica granatum HOM05D002696 ORTHO05D003940 5.9e-42 175.3 244 53.3
BcaC01g01822 Brassica carinata HOM05D002696 ORTHO05D003940 1.3e-41 174.1 240 60.4
BolC3t19451H Brassica oleracea HOM05D002696 ORTHO05D003940 1.3e-41 174.1 240 60.4
CARHR156100 Cardamine hirsuta HOM05D002696 ORTHO05D003940 1.3e-41 174.1 208 49.0
A06p20190 Brassica napus HOM05D002696 ORTHO05D003940 1.7e-41 173.7 240 58.8
AT3G47460 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 3.0e-41 172.9 243 56.8
Gohir.D07G046000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 3.0e-41 172.9 244 50.0
BraA06t25103Z Brassica rapa HOM05D002696 ORTHO05D003940 3.9e-41 172.6 240 58.8
Aa31LG4G16260 Aethionema arabicum HOM05D002696 ORTHO05D003940 5.0e-41 172.2 240 60.8
C03p71600 Brassica napus HOM05D002696 ORTHO05D003940 6.6e-41 171.8 240 52.5
SHI28001 Sapria himalayana HOM05D002696 ORTHO05D000023 8.6e-41 171.4 244 57.8
arahy.Tifrunner.gnm1.ann1.P8M8R5 Arachis hypogaea HOM05D002696 ORTHO05D003940 1.1e-40 171.0 243 59.7
Phvul.011G211100 Phaseolus vulgaris HOM05D002696 ORTHO05D003940 1.1e-40 171.0 243 58.4
COL.COLO4_14108 Corchorus olitorius HOM05D002696 ORTHO05D003940 1.5e-40 170.6 240 47.1
Nitab4.5_0002816g0060 Nicotiana tabacum HOM05D002696 ORTHO05D003940 1.5e-40 170.6 208 66.8
ATR0618G100 Amborella trichopoda HOM05D002696 ORTHO05D003940 2.5e-40 169.9 244 43.9
SGA_v2.0_scaffold2G01216 Striga asiatica HOM05D002696 ORTHO05D003940 2.5e-40 169.9 148 62.8
Sp5g14420 Schrenkiella parvula HOM05D002696 ORTHO05D003940 4.3e-40 169.1 243 58.8
Hund13894 Selenicereus undatus HOM05D002696 ORTHO05D003940 5.6e-40 168.7 244 46.7
GSVIVG01018715001 Vitis vinifera HOM05D002696 ORTHO05D003940 5.6e-40 168.7 244 46.3
A06p29110 Brassica napus HOM05D002696 ORTHO05D003940 1.2e-39 167.5 240 59.6
AL5G26680 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 2.8e-39 166.4 243 53.5
THA.LOC104818260 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 4.7e-39 165.6 243 59.7
Solyc03g093250.2 Solanum lycopersicum HOM05D002696 ORTHO05D003940 1.1e-38 164.5 244 51.6
Sopen03g024050 Solanum pennellii HOM05D002696 ORTHO05D003940 2.3e-38 163.3 244 52.5
CsaV3_3G016100 Cucumis sativus L. HOM05D002696 ORTHO05D003940 4.0e-38 162.5 244 43.0
Glyma.13G202100 Glycine max HOM05D002696 ORTHO05D003940 5.2e-38 162.2 243 56.8
Lj1A979T80 Lonicera japonica HOM05D002696 ORTHO05D003940 5.8e-37 158.7 244 48.4
Oeu022477.1 Olea europaea HOM05D002696 ORTHO05D003940 5.8e-37 158.7 244 42.2
SEGI_28050 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 1.3e-36 157.5 212 54.2
Carub.0008s2309 Capsella rubella HOM05D002696 ORTHO05D003940 4.9e-36 155.6 243 42.8
Thecc.03G154800 Theobroma cacao HOM05D002696 ORTHO05D003940 1.1e-35 154.5 240 54.6
Lalb_Chr03g0034121 Lupinus albus HOM05D002696 ORTHO05D003940 3.2e-35 152.9 243 58.4
BraA06t25859Z Brassica rapa HOM05D002696 ORTHO05D003940 4.1e-35 152.5 240 57.1
ECA234G3187 Erigeron canadensis HOM05D002696 ORTHO05D003940 7.0e-35 151.8 243 56.8
MSTRG.8828 Avicennia marina HOM05D002696 ORTHO05D003940 2.0e-34 150.2 244 48.0
Ah.16g103870 Amaranthus hybridus HOM05D002696 ORTHO05D003940 3.0e-33 146.4 247 54.3
MBI15_g05590_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 3.0e-33 146.4 244 40.6
Aqoxy2G00559 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 5.0e-33 145.6 244 38.9
SalBow8G1580 Salvia bowleyana HOM05D002696 ORTHO05D003940 5.0e-33 145.6 218 46.8
CSS0022672 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 6.6e-33 145.2 244 47.1
Gorai.001G049100 Gossypium raimondii HOM05D002696 ORTHO05D003940 1.1e-32 144.4 244 43.9
QL09p005491 Quercus lobata HOM05D002696 ORTHO05D003940 3.3e-32 142.9 243 57.6
Duzib205G1343 Durio zibethinus HOM05D002696 ORTHO05D003940 4.3e-32 142.5 182 67.6
Carub.0005s1355 Capsella rubella HOM05D002696 ORTHO05D003940 5.6e-32 142.1 244 49.2
HanXRQChr08g0223041 Helianthus annuus HOM05D002696 ORTHO05D003940 9.5e-32 141.4 213 56.8
Sp2g25590 Schrenkiella parvula HOM05D002696 ORTHO05D003940 1.2e-31 141.0 243 42.0
CDE12G0096 Ceratophyllum demersum HOM05D002696 ORTHO05D003940 1.6e-31 140.6 243 40.7
PSO339G0313 Papaver somniferum HOM05D002696 ORTHO05D003940 8.1e-31 138.3 244 38.5
Dinv06564 Davidia involucrata HOM05D002696 ORTHO05D003940 3.1e-30 136.3 187 46.5
HanXRQChr05g0144341 Helianthus annuus HOM05D002696 ORTHO05D003940 5.2e-30 135.6 213 57.3
arahy.Tifrunner.gnm1.ann1.BTDY3I Arachis hypogaea HOM05D002696 ORTHO05D003940 9.9e-29 131.3 243 53.1
Aqoxy7G02846 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 1.3e-28 131.0 244 38.1
BcaC01g02465 Brassica carinata HOM05D002696 ORTHO05D003940 3.7e-28 129.4 240 54.6
C03p64490 Brassica napus HOM05D002696 ORTHO05D003940 3.7e-28 129.4 240 54.6
Lsat_1_v5_gn_8_8781 Lactuca sativa HOM05D002696 ORTHO05D003940 4.9e-28 129.0 213 58.7
Os01g0904400 Oryza sativa ssp. japonica HOM05D002696 ORTHO05D003940 1.4e-27 127.5 244 45.1
THA.LOC104821415 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 7.1e-27 125.2 181 52.5
MBI08_g38581_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 1.2e-26 124.4 213 48.8
Peaxi162Scf00241g00034 Petunia axillaris HOM05D002696 ORTHO05D003940 3.5e-26 122.9 244 50.8
AT5G62410 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 1.3e-25 120.9 168 45.2
TAR633G1694 Trochodendron aralioides HOM05D002696 ORTHO05D003940 1.7e-25 120.6 240 45.4
Cpa.g.sc3.331 Carica papaya HOM05D002696 ORTHO05D003940 2.5e-24 116.7 117 53.8
TAR633G0051 Trochodendron aralioides HOM05D002696 ORTHO05D003940 2.5e-24 116.7 242 43.4
Thhalv10003541m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 4.0e-22 109.4 242 50.8
AagrBONN_evm.TU.Sc2ySwM_344.3408 Anthoceros agrestis HOM05D002696 ORTHO05D003940 6.8e-22 108.6 243 42.0
BcaB02g09643 Brassica carinata HOM05D002696 ORTHO05D003940 1.5e-21 107.5 163 65.0
Aqoxy1G02713 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 7.6e-21 105.1 83 62.7
vmacro06809 Vaccinium macrocarpon HOM05D002696 ORTHO05D003940 8.4e-20 101.7 244 50.0
CSS0036675 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.6e-18 97.4 205 38.0
SMO076G0001 Selaginella moellendorffii HOM05D002696 ORTHO05D003940 2.5e-16 90.1 225 39.1
AUR62022940 Chenopodium quinoa HOM05D002696 ORTHO05D003940 1.2e-15 87.8 230 46.5
HPP92_013639 Vanilla planifolia HOM05D002696 ORTHO05D003940 3.6e-15 86.3 240 30.4
CSS0019414 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 8.1e-15 85.1 244 47.1
CSS0021515 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 8.1e-15 85.1 244 47.1
Glyma.01G049800 Glycine max HOM05D002696 ORTHO05D028961 1.4e-14 84.3 86 50.0
Glyma.02G060600 Glycine max HOM05D002696 ORTHO05D028961 1.4e-14 84.3 86 50.0
HPP92_013637 Vanilla planifolia HOM05D002696 ORTHO05D003940 2.0e-13 80.5 144 38.2
Pp3c13_8840 Physcomitrium patens HOM05D002696 ORTHO05D003940 5.8e-13 79.0 243 39.9
arahy.Tifrunner.gnm1.ann1.ZQ9YZD Arachis hypogaea HOM05D002696 ORTHO05D003940 2.9e-12 76.6 144 61.1
Mapoly0005s0174 Marchantia polymorpha HOM05D002696 ORTHO05D003940 1.1e-11 74.7 209 24.9
AUR62012301 Chenopodium quinoa HOM05D002696 ORTHO05D003940 7.1e-11 72.0 144 56.2
ClCG07G017450 Citrullus lanatus HOM05D002696 ORTHO05D028961 1.6e-10 70.9 89 44.9
CBR_g40806 Chara braunii HOM05D002696 ORTHO05D003940 3.0e-09 66.6 148 29.1
QL09p005526 Quercus lobata HOM05D002696 ORTHO05D003940 1.4e-06 57.8 59 59.3
Aqoxy5G03028 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 5.3e-06 55.8 55 50.9


User provided reference genes

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