Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3562 Fragaria x ananassa HOM05D001876 ORTHO05D019192 2.4e-166 589.0 341 100.0
FAN06G0414 Fragaria x ananassa HOM05D001876 ORTHO05D019192 7.8e-133 477.6 317 91.2
FvH4_7g10420 Fragaria vesca HOM05D001876 ORTHO05D019192 3.3e-123 445.7 283 94.0
FAN01G0741 Fragaria x ananassa HOM05D001876 ORTHO05D019192 9.0e-97 357.8 399 59.4
FAN10G1274 Fragaria x ananassa HOM05D030657 ORTHO05D019192 1.0e-76 291.2 300 68.0
FAN03G1210 Fragaria x ananassa HOM05D001876 ORTHO05D019192 3.9e-76 289.3 313 67.1
FAN25G1930 Fragaria x ananassa HOM05D001876 ORTHO05D002002 1.8e-36 157.5 581 34.4
FAN21G2243 Fragaria x ananassa HOM05D001876 ORTHO05D002002 3.0e-36 156.8 579 33.7
FvH4_3g41980 Fragaria vesca HOM05D001876 ORTHO05D002002 8.9e-36 155.2 582 34.4
FAN16G1749 Fragaria x ananassa HOM05D001876 ORTHO05D002002 2.6e-35 153.7 582 34.2
FvH4_3g41972 Fragaria vesca HOM05D001876 ORTHO05D002002 6.4e-34 149.1 321 39.3
FAN10G0434 Fragaria x ananassa HOM05D030657 ORTHO05D019192 3.3e-30 136.7 99 77.8
RcHm_v2.0_Chr5g0075171 Rosa chinensis HOM05D001876 ORTHO05D002002 1.2e-29 134.8 588 29.6
RcHm_v2.0_Chr4g0407801 Rosa chinensis HOM05D000005 ORTHO05D000012 2.1e-29 134.0 284 39.8
FAN11G3885 Fragaria x ananassa HOM05D001876 ORTHO05D002002 3.1e-28 130.2 289 38.4
Glyma.18G072400 Glycine max HOM05D001876 ORTHO05D002002 8.6e-23 112.1 326 33.4
Nitab4.5_0000152g0190 Nicotiana tabacum HOM05D001876 ORTHO05D002002 2.5e-22 110.5 325 33.8
Nitab4.5_0001303g0100 Nicotiana tabacum HOM05D001876 ORTHO05D002002 5.6e-22 109.4 325 33.5
Peaxi162Scf00006g00717 Petunia axillaris HOM05D001876 ORTHO05D002002 1.4e-20 104.8 276 35.1
Dinv06828 Davidia involucrata HOM05D001876 ORTHO05D002002 1.8e-20 104.4 277 33.9
Hma1.2p1_0193F.1_g084140 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 5.2e-20 102.8 276 34.4
Hma1.2p1_2995F.1_g331450 Hydrangea macrophylla HOM05D001876 ORTHO05D002002 5.2e-20 102.8 276 34.4
Phvul.006G060500 Phaseolus vulgaris HOM05D001876 ORTHO05D002002 5.2e-20 102.8 342 30.7
Cpa.g.sc27.194 Carica papaya HOM05D001876 ORTHO05D002002 6.8e-20 102.4 343 31.2
Nn1g07691 Nelumbo nucifera HOM05D001876 ORTHO05D002002 6.8e-20 102.4 277 33.2
Potri.016G002100 Populus trichocarpa HOM05D001876 ORTHO05D002002 8.9e-20 102.1 278 33.1
VMungo0540G1408 Vigna mungo HOM05D001876 ORTHO05D002002 3.4e-19 100.1 345 30.7
Atru.chr2.3845 Acer truncatum HOM05D001876 ORTHO05D002002 7.5e-19 99.0 345 29.6
Peaxi162Scf00232g00036 Petunia axillaris HOM05D001876 ORTHO05D002002 2.2e-18 97.4 325 32.6
TWI38G1429 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 2.2e-18 97.4 275 32.0
CiPaw.10G084200 Carya illinoinensis HOM05D001876 ORTHO05D002002 2.9e-18 97.1 277 31.4
Haze_09897 Corylus avellana HOM05D001876 ORTHO05D002002 2.9e-18 97.1 371 28.8
Duzib170G0551 Durio zibethinus HOM05D001876 ORTHO05D002002 2.9e-18 97.1 276 33.0
Rhsim06G0234000 Rhododendron simsii HOM05D001876 ORTHO05D002002 6.4e-18 95.9 185 37.8
DCAR_017598 Daucus carota HOM05D001876 ORTHO05D002002 1.9e-17 94.4 266 31.6
Dinv10376 Davidia involucrata HOM05D001876 ORTHO05D002002 3.2e-17 93.6 276 33.7
Cfa016942 Carpinus fangiana HOM05D001876 ORTHO05D002002 7.1e-17 92.4 370 28.4
Sabra16G0318400 Salix brachista HOM05D001876 ORTHO05D002002 1.2e-16 91.7 280 30.7
Gohir.D08G036200 Gossypium hirsutum HOM05D001876 ORTHO05D002002 1.6e-16 91.3 276 31.5
Gorai.004G034200 Gossypium raimondii HOM05D001876 ORTHO05D002002 1.6e-16 91.3 276 31.5
TAR627G0307 Trochodendron aralioides HOM05D001876 ORTHO05D002002 1.6e-16 91.3 184 37.5
Sc07g0002250 Simmondsia chinensis HOM05D001876 ORTHO05D002002 3.5e-16 90.1 279 32.3
CiPaw.09G112100 Carya illinoinensis HOM05D001876 ORTHO05D002002 4.6e-16 89.7 285 30.9
Duzib213G0425 Durio zibethinus HOM05D001876 ORTHO05D002002 4.6e-16 89.7 331 29.9
TPR.G17949 Trifolium pratense HOM05D001876 ORTHO05D002002 7.8e-16 89.0 186 36.6
TAR626G0018 Trochodendron aralioides HOM05D001876 ORTHO05D002002 7.8e-16 89.0 277 31.8
GSVIVG01014783001 Vitis vinifera HOM05D001876 ORTHO05D002002 7.8e-16 89.0 432 27.1
Medtr3g061160 Medicago truncatula HOM05D001876 ORTHO05D002002 1.3e-15 88.2 335 29.6
vmacro09608 Vaccinium macrocarpon HOM05D001876 ORTHO05D002002 1.3e-15 88.2 339 30.4
arahy.Tifrunner.gnm1.ann1.ADA7T8 Arachis hypogaea HOM05D001876 ORTHO05D002002 1.7e-15 87.8 234 34.2
TAR629G2148 Trochodendron aralioides HOM05D001876 ORTHO05D002002 1.7e-15 87.8 286 31.5
arahy.Tifrunner.gnm1.ann1.LQ166S Arachis hypogaea HOM05D001876 ORTHO05D002002 2.3e-15 87.4 242 33.9
arahy.Tifrunner.gnm1.ann1.SQBY3A Arachis hypogaea HOM05D001876 ORTHO05D002002 2.3e-15 87.4 192 36.5
Gohir.A08G025700 Gossypium hirsutum HOM05D001876 ORTHO05D002002 3.9e-15 86.7 276 30.8
QL05p066377 Quercus lobata HOM05D001876 ORTHO05D002002 1.1e-14 85.1 276 29.3
Ca_14851_v3 Cicer arietinum L. HOM05D001876 ORTHO05D002002 1.5e-14 84.7 186 36.0
Lj6g0010416 Lotus japonicus HOM05D001876 ORTHO05D002002 2.5e-14 84.0 186 35.5
MBI15_g41024_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 2.5e-14 84.0 281 29.5
FAN25G2172 Fragaria x ananassa HOM05D001876 ORTHO05D002002 3.3e-14 83.6 171 42.7
arahy.Tifrunner.gnm1.ann1.49CTIT Arachis hypogaea HOM05D001876 ORTHO05D002002 5.6e-14 82.8 206 34.5
SGA_v2.0_scaffold42G15938 Striga asiatica HOM05D001876 ORTHO05D002002 7.3e-14 82.4 303 29.7
MBI15_g35676_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 1.6e-13 81.3 284 31.0
Cfa000007 Carpinus fangiana HOM05D001876 ORTHO05D002002 2.1e-13 80.9 277 30.0
RcHm_v2.0_Chr4g0389341 Rosa chinensis HOM05D001876 ORTHO05D002002 2.1e-13 80.9 156 41.0
Haze_07052 Corylus avellana HOM05D001876 ORTHO05D002002 4.7e-13 79.7 289 30.1
FAN03G1480 Fragaria x ananassa HOM05D013306 ORTHO05D035584 6.2e-13 79.3 320 29.4
Hund01842 Selenicereus undatus HOM05D001876 ORTHO05D002002 8.1e-13 79.0 350 26.6
Prupe.6G032100 Prunus persica HOM05D001876 ORTHO05D002002 1.1e-12 78.6 290 31.0
SHI21632 Sapria himalayana HOM05D001876 ORTHO05D002002 1.1e-12 78.6 183 32.8
Rhsim04G0009400 Rhododendron simsii HOM05D001876 ORTHO05D002002 1.4e-12 78.2 272 30.1
Potri.001G469500 Populus trichocarpa HOM05D001876 ORTHO05D002002 2.3e-12 77.4 356 27.2
THA.LOC104810297 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 4.0e-12 76.6 367 25.9
Actinidia03661 Actinidia chinensis HOM05D001876 ORTHO05D002002 5.2e-12 76.3 279 29.7
MD03G1039800 Malus domestica HOM05D001876 ORTHO05D002002 5.2e-12 76.3 102 49.0
Sp3g11500 Schrenkiella parvula HOM05D001876 ORTHO05D002002 5.2e-12 76.3 219 31.1
HanXRQChr11g0334581 Helianthus annuus HOM05D001876 ORTHO05D002002 8.9e-12 75.5 314 26.8
Potri.006G001400 Populus trichocarpa HOM05D001876 ORTHO05D002002 8.9e-12 75.5 276 28.3
RcHm_v2.0_Chr4g0389211 Rosa chinensis HOM05D001876 ORTHO05D019192 1.2e-11 75.1 73 58.9
HPP92_026159 Vanilla planifolia HOM05D001876 ORTHO05D002002 1.5e-11 74.7 80 48.8
MD11G1041300 Malus domestica HOM05D001876 ORTHO05D002002 2.6e-11 73.9 164 36.6
AUR62035638 Chenopodium quinoa HOM05D001876 ORTHO05D002002 4.4e-11 73.2 366 25.4
Psat5g163240 Pisum sativum HOM05D001876 ORTHO05D002002 4.4e-11 73.2 186 32.3
Carub.0003s1268 Capsella rubella HOM05D001876 ORTHO05D002002 5.8e-11 72.8 91 44.0
HanXRQChr03g0077781 Helianthus annuus HOM05D001876 ORTHO05D002002 9.9e-11 72.0 342 26.9
MBI14_g30654_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 1.3e-10 71.6 280 29.6
Lalb_Chr20g0115301 Lupinus albus HOM05D001876 ORTHO05D002002 1.7e-10 71.2 356 26.4
A05p36310 Brassica napus HOM05D001876 ORTHO05D002002 3.8e-10 70.1 82 43.9
BraA05t22432Z Brassica rapa HOM05D001876 ORTHO05D002002 3.8e-10 70.1 82 43.9
MBI11_g40896_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 3.8e-10 70.1 97 44.3
FAN21G1995 Fragaria x ananassa HOM05D001876 ORTHO05D002002 6.4e-10 69.3 69 60.9
Potri.011G166400 Populus trichocarpa HOM05D001876 ORTHO05D002002 6.4e-10 69.3 410 26.6
RcHm_v2.0_Chr4g0386931 Rosa chinensis HOM05D001876 ORTHO05D002002 6.4e-10 69.3 137 39.4
QL08p001531 Quercus lobata HOM05D001876 ORTHO05D002002 1.1e-09 68.6 323 28.5
BcaC05g29191 Brassica carinata HOM05D001876 ORTHO05D002002 1.4e-09 68.2 82 42.7
C05p54620 Brassica napus HOM05D001876 ORTHO05D002002 1.4e-09 68.2 82 42.7
BolC5t34127H Brassica oleracea HOM05D001876 ORTHO05D002002 1.4e-09 68.2 82 42.7
Duzib235G0083 Durio zibethinus HOM05D001876 ORTHO05D002002 2.4e-09 67.4 275 26.2
FAN06G1630 Fragaria x ananassa HOM05D030657 ORTHO05D201306 3.2e-09 67.0 124 47.6
FAN06G4839 Fragaria x ananassa HOM05D030657 ORTHO05D205629 3.2e-09 67.0 124 47.6
Actinidia30365 Actinidia chinensis HOM05D001876 ORTHO05D002002 4.1e-09 66.6 82 47.6
Aa31LG10G500 Aethionema arabicum HOM05D001876 ORTHO05D002002 4.1e-09 66.6 240 26.2
CDE10G0998 Ceratophyllum demersum HOM05D001876 ORTHO05D002002 5.4e-09 66.2 275 27.6
ECA240G3156 Erigeron canadensis HOM05D001876 ORTHO05D002002 5.4e-09 66.2 347 27.4
Dinv40896 Davidia involucrata HOM05D001876 ORTHO05D002002 7.1e-09 65.9 148 33.1
CDE10G0783 Ceratophyllum demersum HOM05D001876 ORTHO05D002002 9.2e-09 65.5 275 28.7
FvH4_7g10090 Fragaria vesca HOM05D013306 ORTHO05D035584 1.2e-08 65.1 64 59.4
Glyma.08G337200 Glycine max HOM05D001876 ORTHO05D002002 1.2e-08 65.1 349 26.6
AT3G13290 Arabidopsis thaliana HOM05D001876 ORTHO05D002002 2.7e-08 63.9 75 46.7
AT3G13300 Arabidopsis thaliana HOM05D001876 ORTHO05D002002 2.7e-08 63.9 184 29.3
COL.COLO4_31961 Corchorus olitorius HOM05D001876 ORTHO05D002002 2.7e-08 63.9 298 26.8
FAN25G3337 Fragaria x ananassa HOM05D001876 ORTHO05D002002 2.7e-08 63.9 188 35.1
vmacro11629 Vaccinium macrocarpon HOM05D001876 ORTHO05D002002 3.5e-08 63.5 153 32.7
FAN08G2706 Fragaria x ananassa HOM05D013306 ORTHO05D046474 4.6e-08 63.2 56 67.9
Manes.05G206100 Manihot esculenta HOM05D001876 ORTHO05D002002 4.6e-08 63.2 277 27.8
PGR083G2540 Punica granatum HOM05D001876 ORTHO05D002002 4.6e-08 63.2 208 31.2
FAN06G0659 Fragaria x ananassa HOM05D001876 ORTHO05D035584 7.8e-08 62.4 64 57.8
TWI63G1743 Tripterygium wilfordii HOM05D001876 ORTHO05D002002 7.8e-08 62.4 274 27.0
CSS0030826 Camellia sinensis var. sinensis HOM05D001876 ORTHO05D002002 1.3e-07 61.6 164 29.3
Lj1A897T44 Lonicera japonica HOM05D001876 ORTHO05D002002 1.3e-07 61.6 161 28.0
MBI15_g00880_MAGBIO Magnolia biondii HOM05D001876 ORTHO05D002002 2.3e-07 60.8 364 26.4
GSVIVG01006976001 Vitis vinifera HOM05D001876 ORTHO05D002002 2.3e-07 60.8 184 31.5
CiPaw.12G141800 Carya illinoinensis HOM05D001876 ORTHO05D002002 3.0e-07 60.5 284 27.1
CsaV3_3G003970 Cucumis sativus L. HOM05D001876 ORTHO05D002002 3.9e-07 60.1 109 33.9
FvH4_5g06810 Fragaria vesca HOM05D013306 ORTHO05D046474 3.9e-07 60.1 241 30.3
Manes.08G015400 Manihot esculenta HOM05D001876 ORTHO05D002002 3.9e-07 60.1 137 34.3
SGA_v2.0_scaffold8G04429 Striga asiatica HOM05D001876 ORTHO05D002002 5.1e-07 59.7 182 30.2
MELO3C014084.2 Cucumis melo HOM05D001876 ORTHO05D002002 8.6e-07 58.9 109 33.0
Sabra16G0007100 Salix brachista HOM05D001876 ORTHO05D002002 1.1e-06 58.5 333 25.8
COL.COLO4_07762 Corchorus olitorius HOM05D001876 ORTHO05D002002 1.5e-06 58.2 74 45.9
RcHm_v2.0_Chr4g0389201 Rosa chinensis HOM05D001876 ORTHO05D002002 1.5e-06 58.2 118 39.8
BcaC05g30231 Brassica carinata HOM05D001876 ORTHO05D002002 1.9e-06 57.8 238 26.9
Mapoly0037s0026 Marchantia polymorpha HOM05D001876 ORTHO05D002002 2.5e-06 57.4 236 28.0
Thecc.07G005200 Theobroma cacao HOM05D001876 ORTHO05D002002 2.5e-06 57.4 276 26.4
Duzib192G0376 Durio zibethinus HOM05D001876 ORTHO05D002002 3.3e-06 57.0 274 24.5
Lsat_1_v5_gn_7_116441 Lactuca sativa HOM05D001876 ORTHO05D002002 3.3e-06 57.0 345 24.1
Nn1g08429 Nelumbo nucifera HOM05D001876 ORTHO05D002002 3.3e-06 57.0 273 27.5
Cc05_g15500 Coffea canephora HOM05D001876 ORTHO05D002002 4.3e-06 56.6 181 28.2
Migut.H01727 Erythranthe guttata HOM05D001876 ORTHO05D002002 5.6e-06 56.2 129 35.7
HanXRQChr13g0409211 Helianthus annuus HOM05D001876 ORTHO05D002002 5.6e-06 56.2 275 28.0
THA.LOC104822709 Tarenaya hassleriana HOM05D001876 ORTHO05D002002 5.6e-06 56.2 388 23.2
Duzib268G1004 Durio zibethinus HOM05D001876 ORTHO05D002002 7.3e-06 55.8 74 47.3
Gorai.006G081900 Gossypium raimondii HOM05D001876 ORTHO05D002002 7.3e-06 55.8 354 24.9
Dinv04380 Davidia involucrata HOM05D001876 ORTHO05D002002 9.6e-06 55.5 428 22.9
Gohir.A09G067700 Gossypium hirsutum HOM05D001876 ORTHO05D002002 9.6e-06 55.5 352 24.1
Manes.01G005000 Manihot esculenta HOM05D001876 ORTHO05D002002 9.6e-06 55.5 345 24.9
Pp3c9_4880 Physcomitrium patens HOM05D001876 ORTHO05D002002 9.6e-06 55.5 178 29.2
GSVIVG01037795001 Vitis vinifera HOM05D001876 ORTHO05D002002 9.6e-06 55.5 106 34.0


User provided reference genes

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