Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G3152 Fragaria x ananassa HOM05D010408 ORTHO05D015232 1.1e-81 306.6 155 100.0
FvH4_3g27323 Fragaria vesca HOM05D010408 ORTHO05D015232 3.5e-64 248.4 148 87.8
FAN19G1910 Fragaria x ananassa HOM05D010408 ORTHO05D015232 1.7e-50 203.0 148 75.0
FAN01G0821 Fragaria x ananassa HOM05D010408 ORTHO05D015232 6.0e-48 194.5 153 72.5
FvH4_4g11064 Fragaria vesca HOM05D010408 ORTHO05D015232 1.0e-47 193.7 108 91.7
FvH4_7g06405 Fragaria vesca HOM05D010408 ORTHO05D035277 4.0e-36 155.2 79 98.7
FAN10G2119 Fragaria x ananassa HOM05D010408 ORTHO05D210325 2.0e-35 152.9 78 98.7
FvH4_7g06406 Fragaria vesca HOM05D001780 ORTHO05D015232 5.8e-35 151.4 77 97.4
FAN08G1562 Fragaria x ananassa HOM05D010408 ORTHO05D035277 4.2e-33 145.2 79 92.4
FvH4_1g27141 Fragaria vesca HOM05D010408 ORTHO05D196529 9.3e-33 144.1 79 92.4
FvH4_7g05920 Fragaria vesca HOM05D010408 ORTHO05D035277 9.3e-33 144.1 78 91.0
FAN04G2746 Fragaria x ananassa HOM05D010408 ORTHO05D199897 2.8e-21 105.9 103 60.2
FAN17G1275 Fragaria x ananassa HOM05D001780 ORTHO05D004373 1.4e-20 103.6 112 57.1
FvH4_4g11470 Fragaria vesca HOM05D001780 ORTHO05D004373 4.0e-20 102.1 151 45.7
FAN07G0072 Fragaria x ananassa HOM05D001780 ORTHO05D004373 4.0e-20 102.1 151 45.7
FAN22G0035 Fragaria x ananassa HOM05D001780 ORTHO05D004373 4.0e-20 102.1 151 45.7
FAN17G0725 Fragaria x ananassa HOM05D001780 ORTHO05D004373 9.0e-20 100.9 151 45.0
RcHm_v2.0_Chr4g0408181 Rosa chinensis HOM05D001780 ORTHO05D004373 1.0e-18 97.4 151 44.4
FvH4_1g27140 Fragaria vesca HOM05D010408 ORTHO05D197760 1.7e-18 96.7 49 93.9
CiPaw.01G102300 Carya illinoinensis HOM05D001780 ORTHO05D004373 5.0e-18 95.1 151 41.7
Haze_00734 Corylus avellana HOM05D001780 ORTHO05D004373 5.0e-18 95.1 151 41.7
Lalb_Chr09g0320441 Lupinus albus HOM05D001780 ORTHO05D004373 6.5e-18 94.7 150 43.3
ClCG07G015560 Citrullus lanatus HOM05D001780 ORTHO05D004373 8.4e-18 94.4 151 42.4
MELO3C017728.2 Cucumis melo HOM05D001780 ORTHO05D004373 8.4e-18 94.4 151 42.4
CsaV3_4G003190 Cucumis sativus L. HOM05D001780 ORTHO05D004373 8.4e-18 94.4 151 42.4
Cfa015768 Carpinus fangiana HOM05D001780 ORTHO05D004373 1.4e-17 93.6 151 41.1
Dinv33217 Davidia involucrata HOM05D001780 ORTHO05D004373 1.4e-17 93.6 156 41.7
Lj3g0013099 Lotus japonicus HOM05D001780 ORTHO05D004373 1.4e-17 93.6 150 42.7
MD04G1037200 Malus domestica HOM05D001780 ORTHO05D004373 1.4e-17 93.6 151 41.1
Dinv44242 Davidia involucrata HOM05D001780 ORTHO05D004373 1.9e-17 93.2 150 42.0
SGA_v2.0_scaffold29G12214 Striga asiatica HOM05D001780 ORTHO05D004373 1.9e-17 93.2 150 42.0
Dinv15122 Davidia involucrata HOM05D001780 ORTHO05D004373 2.5e-17 92.8 150 42.7
Ca_26060_v3 Cicer arietinum L. HOM05D001780 ORTHO05D004373 3.2e-17 92.4 150 42.0
Nitab4.5_0001198g0100 Nicotiana tabacum HOM05D001780 ORTHO05D004373 3.2e-17 92.4 180 37.8
Sed0001787 Sechium edule HOM05D001780 ORTHO05D004373 4.2e-17 92.0 151 41.7
TAR362G1083 Trochodendron aralioides HOM05D001780 ORTHO05D004373 4.2e-17 92.0 150 41.3
Ciclev10018576m.g Citrus clementina HOM05D001780 ORTHO05D004373 5.5e-17 91.7 150 42.7
TPR.G13745 Trifolium pratense HOM05D001780 ORTHO05D004373 5.5e-17 91.7 150 41.3
Atru.chr12.1705 Acer truncatum HOM05D001780 ORTHO05D004373 7.1e-17 91.3 150 43.3
Atru.chr3.1583 Acer truncatum HOM05D001780 ORTHO05D004373 7.1e-17 91.3 150 43.3
arahy.Tifrunner.gnm1.ann1.05K2HA Arachis hypogaea HOM05D001780 ORTHO05D004373 7.1e-17 91.3 150 40.7
Nitab4.5_0000143g0350 Nicotiana tabacum HOM05D001780 ORTHO05D004373 7.1e-17 91.3 150 42.0
Prupe.1G186600 Prunus persica HOM05D001780 ORTHO05D004373 7.1e-17 91.3 151 41.1
QL10p047812 Quercus lobata HOM05D001780 ORTHO05D004373 7.1e-17 91.3 151 40.4
PGSC0003DMG400013343 Solanum tuberosum HOM05D001780 ORTHO05D004373 7.1e-17 91.3 150 42.0
Atru.chr3.1561 Acer truncatum HOM05D001780 ORTHO05D004373 9.3e-17 90.9 151 43.0
MSTRG.21338 Avicennia marina HOM05D001780 ORTHO05D004373 9.3e-17 90.9 150 42.7
FvH4_3g27500 Fragaria vesca HOM05D010408 ORTHO05D012711 9.3e-17 90.9 52 92.3
Solyc11g012140.2 Solanum lycopersicum HOM05D001780 ORTHO05D004373 9.3e-17 90.9 150 42.0
Sopen11g006930 Solanum pennellii HOM05D001780 ORTHO05D004373 9.3e-17 90.9 150 42.0
Sabra07G0102600 Salix brachista HOM05D001780 ORTHO05D004373 1.2e-16 90.5 150 42.0
Actinidia35963 Actinidia chinensis HOM05D001780 ORTHO05D004373 1.6e-16 90.1 150 41.3
Os06g0645400 Oryza sativa ssp. japonica HOM05D001780 ORTHO05D004373 1.6e-16 90.1 150 42.0
Peaxi162Scf00558g00043 Petunia axillaris HOM05D001780 ORTHO05D004373 1.6e-16 90.1 150 42.0
Rhsim05G0075700 Rhododendron simsii HOM05D001780 ORTHO05D004373 1.6e-16 90.1 151 40.4
arahy.Tifrunner.gnm1.ann1.NNH8AZ Arachis hypogaea HOM05D001780 ORTHO05D004373 2.1e-16 89.7 132 43.2
Psat7g172640 Pisum sativum HOM05D001780 ORTHO05D004373 2.1e-16 89.7 150 40.7
THA.LOC104803625 Tarenaya hassleriana HOM05D001780 ORTHO05D004373 2.1e-16 89.7 150 42.7
TWI56G0090 Tripterygium wilfordii HOM05D001780 ORTHO05D004373 2.1e-16 89.7 150 41.3
unitig_0.g306 Utricularia gibba HOM05D001780 ORTHO05D004373 2.1e-16 89.7 150 40.7
CANSAT78G0939 Cannabis sativa HOM05D001780 ORTHO05D004373 2.7e-16 89.4 150 41.3
vmacro00605 Vaccinium macrocarpon HOM05D001780 ORTHO05D004373 2.7e-16 89.4 150 40.0
Potri.017G033200 Populus trichocarpa HOM05D001780 ORTHO05D004373 3.5e-16 89.0 150 41.3
Actinidia34617 Actinidia chinensis HOM05D001780 ORTHO05D004373 4.6e-16 88.6 150 41.3
CAN.G1186.25 Capsicum annuum HOM05D001780 ORTHO05D004373 4.6e-16 88.6 150 41.3
MD09G1065200 Malus domestica HOM05D001780 ORTHO05D004373 4.6e-16 88.6 150 41.3
Oeu061694.1 Olea europaea HOM05D001780 ORTHO05D004373 4.6e-16 88.6 150 42.0
Sabra17G0020800 Salix brachista HOM05D001780 ORTHO05D004373 4.6e-16 88.6 150 40.7
MBI18_g09771_MAGBIO Magnolia biondii HOM05D001780 ORTHO05D004373 6.1e-16 88.2 150 40.7
Nn1g08648 Nelumbo nucifera HOM05D001780 ORTHO05D004373 6.1e-16 88.2 150 40.7
Oeu025915.1 Olea europaea HOM05D001780 ORTHO05D004373 6.1e-16 88.2 150 40.7
PSO063G4644 Papaver somniferum HOM05D001780 ORTHO05D004373 6.1e-16 88.2 150 40.7
ATR0789G163 Amborella trichopoda HOM05D001780 ORTHO05D004373 7.9e-16 87.8 150 41.3
Lj6C607G11 Lonicera japonica HOM05D001780 ORTHO05D004373 7.9e-16 87.8 150 40.7
VMungo1127G1244 Vigna mungo HOM05D001780 ORTHO05D004373 7.9e-16 87.8 150 40.0
Aqoxy7G01270 Aquilegia oxysepala HOM05D001780 ORTHO05D004373 1.0e-15 87.4 150 40.0
Thecc.05G003300 Theobroma cacao HOM05D001780 ORTHO05D004373 1.0e-15 87.4 150 42.0
Migut.D00680 Erythranthe guttata HOM05D001780 ORTHO05D004373 1.3e-15 87.0 150 41.3
TWI63G0569 Tripterygium wilfordii HOM05D001780 ORTHO05D004373 1.3e-15 87.0 150 41.3
EL10Ac3g05575 Beta vulgaris HOM05D001780 ORTHO05D004373 2.3e-15 86.3 150 38.7
Phvul.011G023400 Phaseolus vulgaris HOM05D001780 ORTHO05D004373 2.3e-15 86.3 150 39.3
Cpa.g.sc32.1 Carica papaya HOM05D001780 ORTHO05D004373 3.0e-15 85.9 87 57.5
AUR62002268 Chenopodium quinoa HOM05D001780 ORTHO05D004373 3.0e-15 85.9 150 38.7
PSO541G0190 Papaver somniferum HOM05D001780 ORTHO05D004373 3.0e-15 85.9 150 40.0
PSO675G8171 Papaver somniferum HOM05D001780 ORTHO05D004373 3.0e-15 85.9 150 40.0
GSVIVG01010735001 Vitis vinifera HOM05D001780 ORTHO05D004373 3.0e-15 85.9 150 40.0
AUR62015426 Chenopodium quinoa HOM05D001780 ORTHO05D004373 3.9e-15 85.5 150 38.7
Gohir.A01G231000 Gossypium hirsutum HOM05D001780 ORTHO05D004373 3.9e-15 85.5 150 41.3
Gohir.D01G221100 Gossypium hirsutum HOM05D001780 ORTHO05D004373 3.9e-15 85.5 150 41.3
Gorai.002G267700 Gossypium raimondii HOM05D001780 ORTHO05D004373 3.9e-15 85.5 150 41.3
DCAR_019070 Daucus carota HOM05D001780 ORTHO05D004373 5.1e-15 85.1 150 40.0
Glyma.11G094300 Glycine max HOM05D001780 ORTHO05D004373 5.1e-15 85.1 150 38.7
Medtr4g076850 Medicago truncatula HOM05D001780 ORTHO05D004373 5.1e-15 85.1 150 40.7
Cc04_g11170 Coffea canephora HOM05D001780 ORTHO05D004373 8.7e-15 84.3 150 40.0
Duzib106G1771 Durio zibethinus HOM05D001780 ORTHO05D004373 8.7e-15 84.3 150 41.3
Glyma.12G020700 Glycine max HOM05D001780 ORTHO05D004373 8.7e-15 84.3 150 38.7
PGR142G2637 Punica granatum HOM05D001780 ORTHO05D004373 8.7e-15 84.3 150 39.3
ECA234G4143 Erigeron canadensis HOM05D001780 ORTHO05D004373 1.1e-14 84.0 150 39.3
Sc20g0004730 Simmondsia chinensis HOM05D001780 ORTHO05D004373 1.1e-14 84.0 150 37.3
COL.COLO4_14418 Corchorus olitorius HOM05D001780 ORTHO05D004373 1.5e-14 83.6 150 40.0
BolC7t45663H Brassica oleracea HOM05D001780 ORTHO05D004373 1.9e-14 83.2 157 40.8
Hund03144 Selenicereus undatus HOM05D001780 ORTHO05D004373 1.9e-14 83.2 150 38.0
Eucgr.H00404 Eucalyptus grandis HOM05D001780 ORTHO05D004373 2.5e-14 82.8 150 39.3
Manes.04G040600 Manihot esculenta HOM05D001780 ORTHO05D004373 2.5e-14 82.8 150 38.7
Zm00001eb275200 Zea mays HOM05D001780 ORTHO05D004373 2.5e-14 82.8 150 38.7
HanXRQChr10g0310431 Helianthus annuus HOM05D001780 ORTHO05D004373 4.3e-14 82.0 150 38.7
Aa31LG10G13700 Aethionema arabicum HOM05D001780 ORTHO05D004373 7.4e-14 81.3 150 41.3
Zm00001eb386920 Zea mays HOM05D001780 ORTHO05D004373 7.4e-14 81.3 150 38.0
BcaB06g27675 Brassica carinata HOM05D001780 ORTHO05D004373 1.6e-13 80.1 150 40.7
A03p53410 Brassica napus HOM05D001780 ORTHO05D004373 1.6e-13 80.1 150 40.7
A04p14990 Brassica napus HOM05D001780 ORTHO05D004373 1.6e-13 80.1 150 40.7
BraA03t14408Z Brassica rapa HOM05D001780 ORTHO05D004373 1.6e-13 80.1 150 40.7
Sp7g00280 Schrenkiella parvula HOM05D001780 ORTHO05D004373 1.6e-13 80.1 150 40.7
BcaNung00801 Brassica carinata HOM05D001780 ORTHO05D004373 2.2e-13 79.7 150 40.0
COL.COLO4_24691 Corchorus olitorius HOM05D001780 ORTHO05D004373 2.2e-13 79.7 152 39.5
Rhsim05G0110000 Rhododendron simsii HOM05D001780 ORTHO05D004373 2.2e-13 79.7 200 32.0
AL7G50050 Arabidopsis lyrata HOM05D001780 ORTHO05D004373 2.8e-13 79.3 150 41.3
Thhalv10027624m.g Eutrema salsugineum HOM05D001780 ORTHO05D004373 2.8e-13 79.3 150 41.3
BcaNung01699 Brassica carinata HOM05D001780 ORTHO05D004373 4.8e-13 78.6 150 40.0
C07p51730 Brassica napus HOM05D001780 ORTHO05D004373 4.8e-13 78.6 179 37.4
Mapoly0045s0031 Marchantia polymorpha HOM05D001780 ORTHO05D004373 4.8e-13 78.6 150 37.3
BcaC02g08915 Brassica carinata HOM05D001780 ORTHO05D004373 6.3e-13 78.2 150 40.0
C04p49170 Brassica napus HOM05D001780 ORTHO05D004373 6.3e-13 78.2 150 40.0
BolC4t26502H Brassica oleracea HOM05D001780 ORTHO05D004373 6.3e-13 78.2 150 40.0
BraA04t17141Z Brassica rapa HOM05D001780 ORTHO05D004373 6.3e-13 78.2 150 40.0
AagrBONN_evm.TU.Sc2ySwM_362.2885 Anthoceros agrestis HOM05D001780 ORTHO05D004373 8.2e-13 77.8 150 38.0
SEGI_14552 Sequoiadendron giganteum HOM05D001780 ORTHO05D004373 8.2e-13 77.8 150 36.7
BcaC08g43402 Brassica carinata HOM05D001780 ORTHO05D004373 1.4e-12 77.0 150 40.0
C07p51720 Brassica napus HOM05D001780 ORTHO05D004373 1.4e-12 77.0 150 40.0
BolC6t35859H Brassica oleracea HOM05D001780 ORTHO05D004373 1.4e-12 77.0 150 40.0
Carub.0006s2892 Capsella rubella HOM05D001780 ORTHO05D004373 1.4e-12 77.0 150 39.3
SMO200G0022 Selaginella moellendorffii HOM05D001780 ORTHO05D004373 2.4e-12 76.3 150 35.3
BcaNung01700 Brassica carinata HOM05D001780 ORTHO05D004373 3.1e-12 75.9 150 39.3
C06p07700 Brassica napus HOM05D001780 ORTHO05D004373 3.1e-12 75.9 150 40.0
CARHR218340 Cardamine hirsuta HOM05D001780 ORTHO05D004373 3.1e-12 75.9 150 40.0
Lsat_1_v5_gn_5_77240 Lactuca sativa HOM05D001780 ORTHO05D004373 3.1e-12 75.9 150 38.0
SEGI_27348 Sequoiadendron giganteum HOM05D001780 ORTHO05D004373 3.1e-12 75.9 150 36.0
CDE05G1969 Ceratophyllum demersum HOM05D001780 ORTHO05D004373 5.3e-12 75.1 150 37.3
AT4G10320 Arabidopsis thaliana HOM05D001780 ORTHO05D004373 1.5e-11 73.6 150 38.0
Pp3c16_16950 Physcomitrium patens HOM05D001780 ORTHO05D004373 2.0e-11 73.2 150 35.3
AL6G44170 Arabidopsis lyrata HOM05D001780 ORTHO05D004373 2.6e-11 72.8 150 38.7
FAN26G2232 Fragaria x ananassa HOM05D001780 ORTHO05D015232 3.4e-11 72.4 40 87.5
FAN10G0574 Fragaria x ananassa HOM05D010408 ORTHO05D035659 5.9e-11 71.6 158 38.0
FAN28G1961 Fragaria x ananassa HOM05D001780 ORTHO05D015232 5.9e-11 71.6 40 87.5
Lsat_1_v5_gn_5_76141 Lactuca sativa HOM05D001780 ORTHO05D004373 5.9e-11 71.6 150 35.3
HPP92_012341 Vanilla planifolia HOM05D001780 ORTHO05D004373 5.9e-11 71.6 69 56.5
FAN06G4347 Fragaria x ananassa HOM05D010408 ORTHO05D015232 1.7e-10 70.1 143 39.2
FAN18G2268 Fragaria x ananassa HOM05D001125 ORTHO05D029363 8.5e-10 67.8 63 57.1
CBR_g17670 Chara braunii HOM05D001780 ORTHO05D004373 3.2e-09 65.9 150 33.3
Carub.0003s2335 Capsella rubella HOM05D001780 ORTHO05D004373 4.2e-09 65.5 150 37.3
COL.COLO4_09454 Corchorus olitorius HOM05D001780 ORTHO05D004373 4.2e-09 65.5 151 35.1
RcHm_v2.0_Chr5g0060191 Rosa chinensis HOM05D001780 ORTHO05D004373 2.7e-08 62.8 78 48.7
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 4.6e-08 62.0 73 58.9
MCO01G256 Micromonas commoda HOM05D001780 ORTHO05D004373 1.8e-07 60.1 150 31.3
arahy.Tifrunner.gnm1.ann1.AHZV2Y Arachis hypogaea HOM05D001780 ORTHO05D004373 3.9e-07 58.9 100 42.0


User provided reference genes

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