Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 8.1e-73 276.9 136 100.0
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 7.5e-71 270.4 132 100.0
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 7.5e-71 270.4 132 100.0
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 7.5e-71 270.4 132 100.0
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 7.5e-71 270.4 132 100.0
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.7e-70 269.2 132 99.2
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 8.3e-70 266.9 132 99.2
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.1e-66 256.5 157 84.1
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 2.5e-66 255.4 132 93.2
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 3.3e-66 255.0 130 95.4
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 2.1e-65 252.3 128 94.5
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 2.1e-65 252.3 129 94.6
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 2.1e-65 252.3 127 96.1
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 2.8e-65 251.9 127 96.1
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 4.7e-65 251.1 129 93.8
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 6.2e-65 250.8 129 93.8
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 6.2e-65 250.8 129 93.8
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 8.1e-65 250.4 129 93.0
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 8.1e-65 250.4 134 91.0
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 1.8e-64 249.2 131 92.4
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 2.4e-64 248.8 129 92.2
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 3.1e-64 248.4 130 92.3
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 4.0e-64 248.1 129 92.2
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 5.2e-64 247.7 132 90.2
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 5.2e-64 247.7 131 91.6
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 5.2e-64 247.7 130 92.3
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 5.2e-64 247.7 130 92.3
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 6.8e-64 247.3 130 91.5
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 6.8e-64 247.3 130 91.5
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.0e-63 245.7 129 91.5
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 2.0e-63 245.7 130 90.8
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 2.0e-63 245.7 127 92.1
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 7.6e-63 243.8 131 90.1
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 1.3e-62 243.0 131 90.8
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.2e-62 242.3 129 89.9
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 2.2e-62 242.3 129 89.9
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 2.2e-62 242.3 129 89.1
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 4.9e-62 241.1 127 91.3
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 6.4e-62 240.7 130 90.8
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 8.4e-62 240.4 126 92.1
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 1.1e-61 240.0 129 89.1
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 1.4e-61 239.6 133 87.2
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 1.9e-61 239.2 127 89.8
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 2.4e-61 238.8 129 87.6
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 2.4e-61 238.8 129 88.4
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.4e-61 238.8 131 89.3
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.4e-61 238.8 131 89.3
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 3.2e-61 238.4 131 87.8
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 3.2e-61 238.4 128 89.1
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 4.1e-61 238.0 132 87.9
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 4.1e-61 238.0 127 90.6
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 7.1e-61 237.3 127 89.8
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 9.2e-61 236.9 131 87.8
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 9.2e-61 236.9 130 89.2
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 9.2e-61 236.9 125 89.6
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 1.2e-60 236.5 132 85.6
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.6e-60 236.1 129 88.4
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 1.6e-60 236.1 132 87.1
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.6e-60 236.1 130 87.7
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 2.7e-60 235.3 129 87.6
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 2.7e-60 235.3 129 88.4
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 2.7e-60 235.3 131 87.8
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 3.5e-60 235.0 129 87.6
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 6.0e-60 234.2 131 87.8
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 6.0e-60 234.2 127 89.0
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 7.8e-60 233.8 131 87.8
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 1.0e-59 233.4 130 87.7
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.0e-59 233.4 131 87.0
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 2.3e-59 232.3 131 86.3
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 2.3e-59 232.3 130 86.2
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 6.6e-59 230.7 127 86.6
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 6.6e-59 230.7 127 86.6
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 6.6e-59 230.7 127 86.6
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 1.5e-58 229.6 127 85.8
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 1.5e-58 229.6 127 88.2
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 4.3e-58 228.0 130 83.8
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 4.3e-58 228.0 130 83.8
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 4.3e-58 228.0 131 84.7
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 4.3e-58 228.0 131 85.5
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 4.3e-58 228.0 131 84.7
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 5.6e-58 227.6 131 84.7
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 7.3e-58 227.3 129 85.3
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 7.3e-58 227.3 124 87.1
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 9.6e-58 226.9 130 83.1
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 9.6e-58 226.9 130 83.1
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 9.6e-58 226.9 130 83.1
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 1.6e-57 226.1 127 86.6
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 1.6e-57 226.1 132 83.3
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 2.8e-57 225.3 127 86.6
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 4.7e-57 224.6 130 82.3
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 6.2e-57 224.2 127 87.4
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 3.1e-56 221.9 127 85.0
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 3.1e-56 221.9 123 86.2
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 3.1e-56 221.9 126 82.5
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 7.6e-55 217.2 129 80.6
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 9.9e-55 216.9 127 82.7
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 3.8e-54 214.9 163 69.3
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.1e-53 213.4 163 68.7
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 1.4e-53 213.0 131 79.4
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 4.2e-53 211.5 182 62.1
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.2e-52 209.9 132 83.3
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.7e-51 206.1 127 77.2
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.5e-50 203.0 124 80.6
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 4.3e-50 201.4 125 76.0
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 1.3e-49 199.9 130 80.0
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 6.2e-49 197.6 194 55.7
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 6.2e-49 197.6 131 71.0
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 1.8e-48 196.1 128 78.9
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 8.4e-46 187.2 128 64.8
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 1.1e-45 186.8 120 70.8
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 1.9e-45 186.0 99 86.9
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 2.7e-44 182.2 130 62.3
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 7.9e-44 180.6 125 73.6
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.3e-43 179.9 132 65.9
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 2.5e-42 175.6 129 63.6
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 8.1e-41 170.6 119 68.9
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 9.0e-40 167.2 135 68.1
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 6.4e-38 161.0 89 89.9
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.4e-37 159.8 93 82.8
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.9e-37 159.5 77 94.8
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 1.9e-37 159.5 86 90.7
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 6.0e-36 154.5 85 88.2
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 3.9e-35 151.8 86 86.0
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-34 150.2 78 85.9
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 1.5e-34 149.8 136 61.8
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 3.3e-34 148.7 86 83.7
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.8e-33 145.6 78 84.6
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-32 143.7 88 79.5
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 1.4e-32 143.3 87 80.5
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.4e-32 142.5 86 81.4
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 3.1e-32 142.1 87 79.3
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 3.1e-32 142.1 87 79.3
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 1.0e-30 137.1 101 73.3
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 1.3e-30 136.7 69 88.4
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.7e-30 136.3 73 84.9
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.9e-29 132.9 81 82.7
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 7.1e-29 131.0 87 77.0
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-28 130.2 66 87.9
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 6.3e-25 117.9 65 80.0
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 6.5e-22 107.8 88 61.4
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 7.9e-20 100.9 87 62.1
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 9.7e-18 94.0 78 57.7
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 2.4e-16 89.4 44 86.4
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 2.4e-16 89.4 47 85.1
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 1.0e-14 84.0 56 78.6
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 3.3e-10 68.9 41 75.6
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 1.1e-08 63.9 39 79.5
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 4.1e-08 62.0 47 66.0


User provided reference genes

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