Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 4.1e-107 391.3 188 100.0
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 4.1e-107 391.3 188 100.0
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 4.1e-107 391.3 188 100.0
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.1e-95 352.4 188 92.0
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.7e-95 352.1 188 91.5
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.3e-93 345.1 188 91.0
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 1.7e-92 342.8 189 87.8
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 2.2e-73 279.3 189 71.4
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 1.1e-72 276.9 189 72.0
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 7.5e-69 264.2 188 67.6
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 1.3e-68 263.5 190 67.4
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 4.8e-68 261.5 190 66.3
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 2.4e-67 259.2 189 67.2
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 3.1e-67 258.8 189 67.7
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 5.4e-67 258.1 195 65.6
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 5.4e-67 258.1 191 63.4
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 9.1e-67 257.3 193 66.3
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 1.6e-66 256.5 194 63.4
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 3.5e-66 255.4 194 64.9
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 4.5e-66 255.0 190 65.3
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 1.0e-65 253.8 191 63.4
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.3e-65 253.4 198 63.1
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 2.3e-65 252.7 192 66.7
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 2.3e-65 252.7 191 62.8
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 2.9e-65 252.3 189 64.0
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 3.8e-65 251.9 188 67.6
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 2.5e-64 249.2 203 61.6
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 3.2e-64 248.8 199 62.8
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 5.5e-64 248.1 189 63.0
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 7.2e-64 247.7 190 61.1
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 7.2e-64 247.7 189 64.6
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 1.6e-63 246.5 189 62.4
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 1.6e-63 246.5 190 61.6
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 4.7e-63 245.0 198 62.1
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 6.1e-63 244.6 195 63.6
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 1.0e-62 243.8 192 60.4
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 2.3e-62 242.7 199 62.8
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 8.8e-62 240.7 177 65.5
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.2e-61 240.4 200 59.0
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.5e-61 240.0 197 59.4
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 1.5e-61 240.0 198 57.6
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 1.3e-60 236.9 191 60.2
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 2.8e-60 235.7 190 58.4
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 3.7e-60 235.3 198 60.6
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 4.9e-60 235.0 193 61.7
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 6.3e-60 234.6 191 59.2
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 8.3e-60 234.2 188 60.1
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 8.3e-60 234.2 207 58.0
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 8.3e-60 234.2 175 62.9
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 1.4e-59 233.4 178 64.0
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.8e-59 233.0 202 55.9
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 4.1e-59 231.9 191 58.6
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 4.1e-59 231.9 179 62.0
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 5.4e-59 231.5 192 62.0
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 7.0e-59 231.1 193 58.0
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 9.2e-59 230.7 188 59.6
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 9.2e-59 230.7 210 55.7
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 9.2e-59 230.7 198 61.1
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 2.0e-58 229.6 204 54.9
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 2.7e-58 229.2 188 58.0
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 1.3e-57 226.9 192 60.9
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 1.3e-57 226.9 179 60.3
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 1.3e-57 226.9 179 60.9
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 1.7e-57 226.5 189 59.3
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 1.7e-57 226.5 214 54.2
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 2.3e-57 226.1 188 58.5
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 2.3e-57 226.1 188 59.6
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 3.8e-57 225.3 213 53.5
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 3.8e-57 225.3 196 57.7
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 6.6e-57 224.6 178 61.8
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 8.6e-57 224.2 203 56.2
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 8.6e-57 224.2 186 59.7
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 1.5e-56 223.4 188 56.4
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 1.5e-56 223.4 188 56.9
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 3.3e-56 222.2 189 58.2
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 1.2e-55 220.3 193 56.5
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 1.2e-55 220.3 188 55.3
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 1.6e-55 219.9 175 58.3
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 2.1e-55 219.5 189 57.1
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 2.8e-55 219.2 198 58.1
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 1.4e-54 216.9 188 58.5
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 1.5e-53 213.4 180 58.3
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 2.6e-53 212.6 194 55.7
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 3.4e-53 212.2 217 51.2
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 8.6e-49 197.6 165 58.2
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 8.6e-49 197.6 200 52.0
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 1.2e-47 193.7 161 58.4
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 1.6e-47 193.4 197 50.8
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 6.2e-47 191.4 158 60.8
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 2.3e-46 189.5 196 50.5
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 7.5e-45 184.5 158 54.4
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.7e-44 183.3 154 57.8
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 3.7e-44 182.2 221 49.3
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 1.6e-39 166.8 181 46.4
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.8e-38 163.3 148 55.4
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 8.9e-38 161.0 112 67.9
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.6e-34 150.2 196 45.4
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 1.0e-33 147.5 145 55.2
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.2e-31 140.6 95 67.4
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 2.8e-31 139.4 187 41.2
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.4e-27 126.3 179 37.4
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 2.4e-27 126.3 172 38.4
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 5.6e-24 115.2 137 42.3
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 1.9e-19 100.1 90 45.6
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 4.6e-18 95.5 106 47.2
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 3.6e-15 85.9 143 37.1
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 1.1e-14 84.3 163 31.9
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 2.4e-14 83.2 142 33.8
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 2.4e-14 83.2 91 42.9
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 6.0e-10 68.6 41 73.2
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 8.7e-09 64.7 121 35.5
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 7.4e-08 61.6 41 68.3
MD07G1221000 Malus domestica HOM05D005539 ORTHO05D006644 1.3e-07 60.8 36 75.0
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.6e-07 60.5 40 70.0


User provided reference genes

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