Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g22390 Fragaria vesca HOM05D003624 ORTHO05D004188 5.1e-205 717.6 391 100.0
FAN06G1965 Fragaria x ananassa HOM05D003624 ORTHO05D004188 5.1e-205 717.6 391 100.0
FAN06G4942 Fragaria x ananassa HOM05D003624 ORTHO05D004188 5.1e-205 717.6 391 100.0
FAN03G2437 Fragaria x ananassa HOM05D003624 ORTHO05D004188 2.0e-193 679.1 391 95.4
FAN10G3681 Fragaria x ananassa HOM05D003624 ORTHO05D004188 1.0e-192 676.8 375 95.2
FAN01G2477 Fragaria x ananassa HOM05D003624 ORTHO05D004188 6.5e-192 674.1 375 94.1
FAN01G1443 Fragaria x ananassa HOM05D003624 ORTHO05D004188 3.6e-190 668.3 391 94.4
RcHm_v2.0_Chr1g0367021 Rosa chinensis HOM05D003624 ORTHO05D004188 3.7e-187 658.3 394 91.9
Prupe.2G234600 Prunus persica HOM05D003624 ORTHO05D004188 1.8e-173 612.8 394 79.2
Prupe.6G266400 Prunus persica HOM05D003624 ORTHO05D004188 7.0e-170 600.9 393 78.4
CANSAT54G1653 Cannabis sativa HOM05D003624 ORTHO05D004188 4.9e-163 578.2 394 76.6
MELO3C014877.2 Cucumis melo HOM05D003624 ORTHO05D004188 1.6e-161 573.2 396 74.0
CsaV3_3G027090 Cucumis sativus L. HOM05D003624 ORTHO05D004188 2.7e-161 572.4 396 73.7
AL1G63460 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 6.6e-160 567.8 414 74.2
Carub.0001s4395 Capsella rubella HOM05D003624 ORTHO05D004188 6.6e-160 567.8 411 73.7
Nn6g34375 Nelumbo nucifera HOM05D003624 ORTHO05D004188 2.5e-159 565.8 393 72.5
Gohir.D10G228000 Gossypium hirsutum HOM05D003624 ORTHO05D004188 3.3e-159 565.5 396 72.2
Gorai.011G260400 Gossypium raimondii HOM05D003624 ORTHO05D004188 3.3e-159 565.5 396 72.2
Aa31LG10G790 Aethionema arabicum HOM05D003624 ORTHO05D004188 7.3e-159 564.3 413 70.9
Gohir.A10G218400 Gossypium hirsutum HOM05D003624 ORTHO05D004188 1.2e-158 563.5 396 72.0
Cc07_g19190 Coffea canephora HOM05D003624 ORTHO05D004188 1.6e-158 563.1 393 73.3
ClCG05G013440 Citrullus lanatus HOM05D003624 ORTHO05D004188 2.1e-158 562.8 394 73.1
ClCG01G013570 Citrullus lanatus HOM05D003624 ORTHO05D004188 2.8e-158 562.4 394 73.4
Duzib114G1042 Durio zibethinus HOM05D003624 ORTHO05D004188 2.8e-158 562.4 398 72.4
AT1G55460 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 6.2e-158 561.2 412 70.4
Potri.010G204900 Populus trichocarpa HOM05D003624 ORTHO05D004188 2.3e-157 559.3 401 75.1
MD01G1133500 Malus domestica HOM05D003624 ORTHO05D004188 3.1e-157 558.9 377 76.9
Manes.07G115700 Manihot esculenta HOM05D003624 ORTHO05D004188 1.2e-156 557.0 399 74.2
Sc10g0001520 Simmondsia chinensis HOM05D003624 ORTHO05D004188 1.2e-156 557.0 396 71.7
Potri.008G055300 Populus trichocarpa HOM05D003624 ORTHO05D004188 4.4e-156 555.1 397 76.3
Eucgr.C04375 Eucalyptus grandis HOM05D003624 ORTHO05D004188 5.8e-156 554.7 395 71.9
Sed0019448 Sechium edule HOM05D003624 ORTHO05D004188 5.8e-156 554.7 396 72.0
QL06p008449 Quercus lobata HOM05D003624 ORTHO05D004188 1.7e-155 553.1 391 76.5
QL09p007395 Quercus lobata HOM05D003624 ORTHO05D004188 1.7e-155 553.1 392 78.1
QL93p0214_0025 Quercus lobata HOM05D003624 ORTHO05D004188 1.7e-155 553.1 392 78.1
TAR636G1411 Trochodendron aralioides HOM05D003624 ORTHO05D004188 1.7e-155 553.1 395 71.1
Cpa.g.sc1.400 Carica papaya HOM05D003624 ORTHO05D004188 2.2e-155 552.7 402 70.1
Hma1.2p1_0493F.1_g164850 Hydrangea macrophylla HOM05D003624 ORTHO05D004188 2.2e-155 552.7 398 73.6
Dinv27204 Davidia involucrata HOM05D003624 ORTHO05D004188 2.9e-155 552.4 396 75.5
CSS0018661 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 8.3e-155 550.8 396 73.5
PSO384G3632 Papaver somniferum HOM05D003624 ORTHO05D004188 8.3e-155 550.8 400 71.2
Cc04_g09670 Coffea canephora HOM05D003624 ORTHO05D004188 3.2e-154 548.9 391 72.1
Sp1g41070 Schrenkiella parvula HOM05D003624 ORTHO05D004188 4.1e-154 548.5 417 69.8
PSO339G0082 Papaver somniferum HOM05D003624 ORTHO05D004188 5.4e-154 548.1 400 70.8
Nitab4.5_0001992g0010 Nicotiana tabacum HOM05D003624 ORTHO05D004188 1.2e-153 547.0 403 70.5
CARHR045130 Cardamine hirsuta HOM05D003624 ORTHO05D004188 2.0e-153 546.2 407 69.5
Peaxi162Scf00015g10126 Petunia axillaris HOM05D003624 ORTHO05D004188 2.0e-153 546.2 400 71.8
Thhalv10011527m.g Eutrema salsugineum HOM05D003624 ORTHO05D004188 2.7e-153 545.8 415 68.0
Peaxi162Scf00001g00045 Petunia axillaris HOM05D003624 ORTHO05D004188 3.5e-153 545.4 400 71.0
AUR62031721 Chenopodium quinoa HOM05D003624 ORTHO05D004188 2.3e-152 542.7 401 69.1
Haze_15559 Corylus avellana HOM05D003624 ORTHO05D004188 3.0e-152 542.3 394 74.4
Thecc.10G043100 Theobroma cacao HOM05D003624 ORTHO05D004188 3.0e-152 542.3 391 74.4
AUR62032608 Chenopodium quinoa HOM05D003624 ORTHO05D004188 5.0e-152 541.6 396 71.5
DCAR_001936 Daucus carota HOM05D003624 ORTHO05D004188 5.0e-152 541.6 393 72.8
CiPaw.01G286800 Carya illinoinensis HOM05D003624 ORTHO05D004188 8.6e-152 540.8 395 75.4
Ca_06309_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 8.6e-152 540.8 399 73.2
Psat2g013120 Pisum sativum HOM05D003624 ORTHO05D004188 8.6e-152 540.8 398 72.1
Duzib106G0342 Durio zibethinus HOM05D003624 ORTHO05D004188 5.6e-151 538.1 392 72.4
Nitab4.5_0006489g0020 Nicotiana tabacum HOM05D003624 ORTHO05D004188 5.6e-151 538.1 403 70.2
PGR142G3002 Punica granatum HOM05D003624 ORTHO05D004188 7.3e-151 537.7 389 68.4
Lsat_1_v5_gn_3_22041 Lactuca sativa HOM05D003624 ORTHO05D004188 9.5e-151 537.3 392 70.4
MBI12_g10423_MAGBIO Magnolia biondii HOM05D003624 ORTHO05D004188 9.5e-151 537.3 392 72.7
EL10Ac2g04634 Beta vulgaris HOM05D003624 ORTHO05D004188 1.6e-150 536.6 399 68.4
Lalb_Chr03g0040441 Lupinus albus HOM05D003624 ORTHO05D004188 1.6e-150 536.6 399 71.9
Lalb_Chr04g0248651 Lupinus albus HOM05D003624 ORTHO05D004188 1.6e-150 536.6 399 71.9
Atru.chr4.2829 Acer truncatum HOM05D003624 ORTHO05D004188 8.1e-150 534.3 402 68.4
Aqoxy2G03154 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 8.1e-150 534.3 400 71.0
Ciclev10005088m.g Citrus clementina HOM05D003624 ORTHO05D004188 8.1e-150 534.3 406 71.2
Rhsim05G0153700 Rhododendron simsii HOM05D003624 ORTHO05D004188 1.1e-149 533.9 393 73.8
Sabra08G0039900 Salix brachista HOM05D003624 ORTHO05D004188 1.4e-149 533.5 397 74.3
Lj2C36T16 Lonicera japonica HOM05D003624 ORTHO05D004188 4.0e-149 531.9 396 72.7
Ah.16g102270 Amaranthus hybridus HOM05D003624 ORTHO05D004188 5.2e-149 531.6 402 67.4
HanXRQChr08g0234751 Helianthus annuus HOM05D003624 ORTHO05D004188 6.8e-149 531.2 410 66.8
Phvul.003G195200 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 8.9e-149 530.8 401 71.6
Rhsim03G0131100 Rhododendron simsii HOM05D003624 ORTHO05D004188 8.9e-149 530.8 393 73.5
THA.LOC104815670 Tarenaya hassleriana HOM05D003624 ORTHO05D004188 8.9e-149 530.8 409 71.4
VMungo0647G0302 Vigna mungo HOM05D003624 ORTHO05D004188 8.9e-149 530.8 399 71.2
CDE04G0801 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 2.0e-148 529.6 396 70.2
Oeu048253.2 Olea europaea HOM05D003624 ORTHO05D004188 3.4e-148 528.9 402 70.9
Phvul.008G264800 Phaseolus vulgaris HOM05D003624 ORTHO05D004188 1.3e-147 526.9 397 71.0
TWI60G1571 Tripterygium wilfordii HOM05D003624 ORTHO05D004188 2.9e-147 525.8 398 73.9
vmacro17110 Vaccinium macrocarpon HOM05D003624 ORTHO05D004188 3.7e-147 525.4 397 71.8
C06p16060 Brassica napus HOM05D003624 ORTHO05D004188 1.1e-146 523.9 398 71.6
Migut.B01491 Erythranthe guttata HOM05D003624 ORTHO05D004188 1.1e-146 523.9 399 70.7
A05p17470 Brassica napus HOM05D003624 ORTHO05D004188 1.9e-146 523.1 399 71.2
BraA05t20642Z Brassica rapa HOM05D003624 ORTHO05D004188 1.9e-146 523.1 399 71.2
CAN.G862.53 Capsicum annuum HOM05D003624 ORTHO05D004188 2.4e-146 522.7 404 70.3
TPR.G29126 Trifolium pratense HOM05D003624 ORTHO05D004188 7.1e-146 521.2 399 73.4
BcaC08g44198 Brassica carinata HOM05D003624 ORTHO05D004188 1.6e-145 520.0 399 72.4
BolC6t36805H Brassica oleracea HOM05D003624 ORTHO05D004188 1.6e-145 520.0 399 72.4
PGSC0003DMG400023427 Solanum tuberosum HOM05D003624 ORTHO05D004188 1.6e-145 520.0 399 67.4
Sopen05g032980 Solanum pennellii HOM05D003624 ORTHO05D004188 2.1e-145 519.6 400 70.5
Solyc05g054500.1 Solanum lycopersicum HOM05D003624 ORTHO05D004188 3.5e-145 518.8 400 70.2
Medtr5g092130 Medicago truncatula HOM05D003624 ORTHO05D004188 4.6e-145 518.5 399 69.9
BcaB02g10822 Brassica carinata HOM05D003624 ORTHO05D004188 1.3e-144 516.9 395 71.4
HPP92_019187 Vanilla planifolia HOM05D003624 ORTHO05D004188 1.7e-144 516.5 410 66.6
Lj3g0027074 Lotus japonicus HOM05D003624 ORTHO05D004188 2.3e-144 516.2 400 71.2
arahy.Tifrunner.gnm1.ann1.2R0TK7 Arachis hypogaea HOM05D003624 ORTHO05D004188 1.1e-143 513.8 400 74.0
COL.COLO4_34579 Corchorus olitorius HOM05D003624 ORTHO05D004188 9.5e-143 510.8 393 70.2
Glyma.14G026000 Glycine max HOM05D003624 ORTHO05D004188 2.8e-142 509.2 400 71.5
Glyma.02G288800 Glycine max HOM05D003624 ORTHO05D004188 1.4e-141 506.9 400 70.8
ATR0691G007 Amborella trichopoda HOM05D003624 ORTHO05D004188 3.1e-141 505.8 391 68.8
Lj3g0001422 Lotus japonicus HOM05D003624 ORTHO05D004188 5.2e-141 505.0 400 71.8
Nn3g21232 Nelumbo nucifera HOM05D003624 ORTHO05D004188 2.6e-140 502.7 370 69.2
Peaxi162Scf00271g00059 Petunia axillaris HOM05D003624 ORTHO05D004188 3.4e-140 502.3 375 71.5
unitig_749.g13772 Utricularia gibba HOM05D003624 ORTHO05D004188 4.4e-140 501.9 399 65.9
LjContig00310g0027848 Lotus japonicus HOM05D003624 ORTHO05D004188 2.9e-139 499.2 397 68.8
BcaB04g16957 Brassica carinata HOM05D003624 ORTHO05D004188 1.1e-138 497.3 403 66.3
C03p92710 Brassica napus HOM05D003624 ORTHO05D004188 2.4e-138 496.1 398 68.8
CDE07G1603 Ceratophyllum demersum HOM05D003624 ORTHO05D004188 2.1e-137 493.0 369 71.3
BcaC01g01521 Brassica carinata HOM05D003624 ORTHO05D004188 6.0e-137 491.5 396 68.7
BolSC126t60220H Brassica oleracea HOM05D003624 ORTHO05D004188 6.0e-137 491.5 396 68.7
A08p00650 Brassica napus HOM05D003624 ORTHO05D004188 1.0e-136 490.7 394 69.5
BraA08t32123Z Brassica rapa HOM05D003624 ORTHO05D004188 1.0e-136 490.7 394 69.5
Prupe.4G141300 Prunus persica HOM05D003624 ORTHO05D004188 3.0e-136 489.2 341 76.0
COL.COLO4_15033 Corchorus olitorius HOM05D003624 ORTHO05D004188 3.9e-136 488.8 392 65.1
Rhsim05G0154000 Rhododendron simsii HOM05D003624 ORTHO05D004188 5.1e-136 488.4 389 68.4
Aqoxy6G02821 Aquilegia oxysepala HOM05D003624 ORTHO05D004188 1.1e-135 487.3 397 66.0
AL185U10020 Arabidopsis lyrata HOM05D003624 ORTHO05D004188 1.9e-135 486.5 412 65.5
Mapoly0087s0013 Marchantia polymorpha HOM05D003624 ORTHO05D004188 2.2e-131 473.0 407 60.4
Zm00001eb232160 Zea mays HOM05D003624 ORTHO05D004188 6.4e-131 471.5 423 61.5
Pp3c24_1610 Physcomitrium patens HOM05D003624 ORTHO05D004188 1.1e-127 460.7 409 58.7
Nitab4.5_0000578g0060 Nicotiana tabacum HOM05D003624 ORTHO05D004188 8.1e-126 454.5 377 63.4
Psat2g013800 Pisum sativum HOM05D003624 ORTHO05D004188 2.4e-125 453.0 391 61.6
CSS0014624 Camellia sinensis var. sinensis HOM05D003624 ORTHO05D004188 2.2e-123 446.4 365 66.0
Os03g0570300 Oryza sativa ssp. japonica HOM05D003624 ORTHO05D004188 1.9e-122 443.4 428 55.4
AagrBONN_evm.TU.Sc2ySwM_368.2590 Anthoceros agrestis HOM05D003624 ORTHO05D004188 1.2e-121 440.7 410 55.6
Zm00001eb208070 Zea mays HOM05D003624 ORTHO05D004188 3.9e-120 435.6 423 59.6
SMO358G0194 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 8.7e-120 434.5 392 56.6
SEGI_37535 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 3.3e-119 432.6 418 58.9
ECA232G3640 Erigeron canadensis HOM05D003624 ORTHO05D004188 1.2e-116 424.1 341 65.1
SMO142G0061 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 1.7e-115 420.2 390 55.6
ECA247G0176 Erigeron canadensis HOM05D003624 ORTHO05D004188 6.4e-115 418.3 342 64.3
Atru.chr11.11 Acer truncatum HOM05D003624 ORTHO05D004188 7.1e-114 414.8 377 59.4
Nitab4.5_0004476g0070 Nicotiana tabacum HOM05D003624 ORTHO05D004188 9.6e-111 404.4 376 61.7
Prupe.1G588200 Prunus persica HOM05D003624 ORTHO05D004188 2.8e-110 402.9 288 75.0
Peaxi162Scf00015g01215 Petunia axillaris HOM05D003624 ORTHO05D004188 5.8e-108 395.2 329 66.9
GSVIVG01008269001 Vitis vinifera HOM05D003624 ORTHO05D004188 8.4e-107 391.3 392 56.1
RcHm_v2.0_Chr4g0406621 Rosa chinensis HOM05D003624 ORTHO05D004188 1.6e-105 387.1 293 76.1
AT5G51795 Arabidopsis thaliana HOM05D003624 ORTHO05D004188 8.4e-99 364.8 392 53.1
Ca_20539_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 9.3e-98 361.3 241 75.5
CAN.G1013.23 Capsicum annuum HOM05D003624 ORTHO05D004188 4.8e-94 349.0 397 48.6
DCAR_027848 Daucus carota HOM05D003624 ORTHO05D004188 6.3e-94 348.6 394 51.8
Duzib106G1275 Durio zibethinus HOM05D003624 ORTHO05D004188 4.5e-92 342.4 233 73.0
Actinidia02952 Actinidia chinensis HOM05D003624 ORTHO05D004188 8.5e-91 338.2 244 71.3
EL10Ac6g13458 Beta vulgaris HOM05D003624 ORTHO05D004188 3.0e-88 329.7 390 46.9
unitig_26.g9714 Utricularia gibba HOM05D001237 ORTHO05D001827 1.4e-85 320.9 182 84.1
Lj8P413T16 Lonicera japonica HOM05D003624 ORTHO05D004188 4.1e-85 319.3 342 54.4
arahy.Tifrunner.gnm1.ann1.Y1WZEQ Arachis hypogaea HOM05D003624 ORTHO05D004188 1.2e-84 317.8 241 67.2
Cre16.g654350 Chlamydomonas reinhardtii HOM05D003624 ORTHO05D004188 1.2e-81 307.8 436 43.1
CBR_g4138 Chara braunii HOM05D003624 ORTHO05D004188 6.1e-81 305.4 218 68.3
QL08p059869 Quercus lobata HOM05D003624 ORTHO05D004188 1.7e-78 297.4 319 55.5
Carub.0001s4393 Capsella rubella HOM05D003624 ORTHO05D004188 2.0e-76 290.4 165 83.6
MCO11G291 Micromonas commoda HOM05D003624 ORTHO05D004188 3.2e-74 283.1 402 40.5
SMO347G0189 Selaginella moellendorffii HOM05D003624 ORTHO05D004188 2.1e-65 253.8 398 38.7
COL.COLO4_15032 Corchorus olitorius HOM05D003624 ORTHO05D004188 1.8e-64 250.8 147 77.6
RcHm_v2.0_Chr2g0124981 Rosa chinensis HOM05D003624 ORTHO05D004188 6.8e-64 248.8 198 78.8
Ca_06298_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 6.3e-62 242.3 245 63.3
CARHR218910 Cardamine hirsuta HOM05D003624 ORTHO05D004188 3.0e-56 223.4 195 63.6
AUR62001070 Chenopodium quinoa HOM05D003624 ORTHO05D004188 5.2e-56 222.6 214 58.4
Cpa.g.sc80.54 Carica papaya HOM05D003624 ORTHO05D004188 2.0e-52 210.7 193 63.2
MD07G1197800 Malus domestica HOM05D003624 ORTHO05D004188 5.9e-52 209.1 236 55.5
Lj8P417T12 Lonicera japonica HOM05D003624 ORTHO05D004188 8.0e-49 198.7 131 83.2
Prupe.4G141400 Prunus persica HOM05D003624 ORTHO05D004188 9.8e-47 191.8 370 37.0
CBR_g36354 Chara braunii HOM05D003624 ORTHO05D004188 2.3e-43 180.6 135 65.9
SEGI_33076 Sequoiadendron giganteum HOM05D003919 ORTHO05D004188 2.8e-41 173.7 135 66.7
arahy.Tifrunner.gnm1.ann1.8ZK91E Arachis hypogaea HOM05D003624 ORTHO05D004188 4.4e-39 166.4 105 78.1
SEGI_09016 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 4.4e-39 166.4 136 65.4
Cfa024674 Carpinus fangiana HOM05D003624 ORTHO05D004188 7.5e-39 165.6 179 42.5
Dinv02280 Davidia involucrata HOM05D003624 ORTHO05D004188 9.5e-34 148.7 73 89.0
ATR0691G167 Amborella trichopoda HOM05D003624 ORTHO05D004188 8.1e-33 145.6 104 67.3
CARHR218920 Cardamine hirsuta HOM05D003624 ORTHO05D004188 7.5e-31 139.0 81 75.3
RcHm_v2.0_Chr2g0124991 Rosa chinensis HOM05D003624 ORTHO05D004188 2.2e-30 137.5 67 91.0
arahy.Tifrunner.gnm1.ann1.P0I32D Arachis hypogaea HOM05D003624 ORTHO05D004188 2.4e-29 134.0 105 65.7
RcHm_v2.0_Chr4g0406611 Rosa chinensis HOM05D003624 ORTHO05D004188 1.0e-27 128.6 81 82.7
HPP92_019195 Vanilla planifolia HOM05D003624 ORTHO05D004188 4.0e-24 116.7 78 71.8
SEGI_08994 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.5e-23 114.8 70 75.7
SEGI_35739 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.5e-23 114.8 70 75.7
Actinidia07728 Actinidia chinensis HOM05D003624 ORTHO05D004188 4.4e-23 113.2 74 73.0
unitig_26.g9713 Utricularia gibba HOM05D003624 ORTHO05D004188 5.4e-21 106.3 76 69.7
SEGI_06253 Sequoiadendron giganteum HOM05D003624 ORTHO05D004188 1.1e-18 98.6 79 60.8
DCAR_004680 Daucus carota HOM05D003624 ORTHO05D004188 3.4e-15 87.0 55 72.7
Ca_06299_v3 Cicer arietinum L. HOM05D003624 ORTHO05D004188 9.9e-15 85.5 141 48.2
arahy.Tifrunner.gnm1.ann1.T8I7QW Arachis hypogaea HOM05D003624 ORTHO05D004188 2.2e-14 84.3 97 48.5
TAR625G1177 Trochodendron aralioides HOM05D003624 ORTHO05D004188 4.9e-14 83.2 84 52.4
MCO11G622 Micromonas commoda HOM05D003624 ORTHO05D004188 5.8e-07 59.7 135 25.9


User provided reference genes

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