Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 6.6e-243 843.6 417 100.0
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.6e-220 769.2 416 93.0
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 8.5e-182 640.6 417 81.3
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 1.5e-178 629.8 317 97.8
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 6.5e-174 614.4 447 72.9
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 1.5e-165 586.6 433 70.9
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 8.6e-150 534.3 285 95.4
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 1.6e-148 530.0 414 65.9
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 6.4e-145 518.1 396 64.9
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 1.6e-143 513.5 396 64.6
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 1.0e-142 510.8 430 62.1
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 6.6e-142 508.1 407 62.9
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 3.6e-140 502.3 415 60.0
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 4.7e-140 501.9 431 60.1
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 2.3e-139 499.6 413 62.7
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 4.4e-138 495.4 427 63.0
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.7e-137 493.4 426 59.6
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 1.9e-136 490.0 424 59.4
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 7.1e-136 488.0 395 63.3
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 2.7e-135 486.1 386 63.5
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 7.8e-135 484.6 395 63.0
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 1.3e-134 483.8 396 64.1
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 3.9e-134 482.3 395 62.3
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 5.1e-134 481.9 460 56.5
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 4.3e-133 478.8 429 57.6
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 5.6e-133 478.4 418 61.5
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 2.1e-132 476.5 446 57.0
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 2.8e-132 476.1 413 60.3
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 4.7e-132 475.3 402 63.2
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 8.1e-132 474.6 405 60.5
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 1.1e-131 474.2 417 59.2
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 1.8e-131 473.4 437 58.1
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 1.2e-130 470.7 416 57.5
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 1.5e-130 470.3 341 70.1
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 3.4e-130 469.2 402 59.7
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 9.9e-130 467.6 436 55.3
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 2.2e-129 466.5 395 62.8
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 2.2e-129 466.5 423 56.5
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 3.8e-129 465.7 423 56.5
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 4.9e-129 465.3 416 59.9
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 1.1e-128 464.2 423 56.3
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 9.2e-128 461.1 403 61.3
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 1.2e-127 460.7 399 61.2
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 3.5e-127 459.1 416 56.7
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 3.5e-127 459.1 405 60.7
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 7.8e-127 458.0 436 54.1
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 1.0e-126 457.6 405 61.7
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 1.0e-126 457.6 413 58.6
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 5.1e-126 455.3 418 57.9
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 8.6e-126 454.5 378 61.9
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 8.6e-126 454.5 388 60.6
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 1.1e-125 454.1 410 59.5
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 7.3e-125 451.4 405 57.5
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 9.6e-125 451.1 412 58.3
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 1.6e-124 450.3 411 58.6
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.7e-124 448.7 412 57.5
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 6.2e-124 448.4 413 56.4
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 8.1e-124 448.0 413 56.7
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 3.1e-123 446.0 411 57.9
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 1.5e-122 443.7 438 54.6
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 2.0e-122 443.4 421 58.9
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.3e-121 440.7 441 54.4
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.3e-121 440.7 442 54.5
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 2.2e-121 439.9 427 53.9
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 6.4e-121 438.3 361 63.2
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 1.1e-120 437.6 442 53.4
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 4.6e-119 432.2 416 55.8
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 7.8e-119 431.4 408 56.1
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 1.3e-118 430.6 360 61.9
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 1.7e-118 430.3 425 55.5
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 6.6e-118 428.3 417 57.6
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 6.6e-118 428.3 417 55.4
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 1.1e-117 427.6 428 54.0
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 1.5e-117 427.2 419 54.7
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 1.9e-117 426.8 411 55.2
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 5.6e-117 425.2 340 62.9
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 2.4e-115 419.9 355 60.8
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 1.2e-114 417.5 345 64.1
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 1.5e-114 417.2 385 57.9
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 2.0e-114 416.8 423 54.8
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 9.9e-114 414.5 437 52.9
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 2.2e-113 413.3 432 52.5
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.2e-113 413.3 410 55.4
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 6.4e-113 411.8 356 61.5
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 9.6e-109 397.9 387 54.3
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 8.1e-108 394.8 354 59.6
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.2e-106 391.0 334 60.5
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 4.9e-105 385.6 351 61.3
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.2e-103 380.9 360 56.1
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 8.7e-102 374.8 387 53.5
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 4.3e-101 372.5 399 51.1
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 1.1e-93 347.8 418 51.0
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 7.4e-93 345.1 370 49.7
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 4.8e-92 342.4 302 60.9
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 2.4e-91 340.1 375 50.9
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 7.2e-88 328.6 363 52.6
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 3.6e-87 326.2 400 46.0
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 7.4e-85 318.5 414 45.2
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 1.2e-79 301.2 314 55.7
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 2.7e-79 300.1 258 62.0
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 6.1e-79 298.9 523 37.7
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 1.4e-78 297.7 257 60.7
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 4.4e-77 292.7 221 66.1
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 9.7e-77 291.6 330 51.2
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 4.2e-72 276.2 515 36.1
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 1.3e-65 254.6 236 57.6
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 1.7e-65 254.2 310 47.4
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 5.0e-65 252.7 425 39.1
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 1.8e-62 244.2 220 56.4
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 2.8e-60 236.9 261 52.9
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 5.3e-59 232.6 435 37.7
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.7e-58 230.3 180 62.2
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 1.0e-57 228.4 253 47.4
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 8.5e-57 225.3 189 59.3
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 7.2e-56 222.2 337 41.2
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 4.1e-51 206.5 166 71.1
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 9.1e-51 205.3 174 63.8
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 2.8e-47 193.7 190 58.9
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 1.5e-45 188.0 154 61.0
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 1.3e-44 184.9 185 53.0
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 5.4e-43 179.5 194 47.9
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 5.9e-42 176.0 276 39.9
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 1.5e-32 144.8 122 57.4
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 2.5e-32 144.1 93 77.4
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 3.3e-32 143.7 436 30.5
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 1.6e-31 141.4 818 23.1
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 1.1e-30 138.7 396 27.0
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 2.0e-29 134.4 106 56.6
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 2.0e-29 134.4 89 74.2
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 9.8e-29 132.1 81 79.0
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 2.2e-28 131.0 124 50.8
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 4.6e-26 123.2 434 29.3
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 3.0e-25 120.6 84 70.2
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 2.3e-22 110.9 133 47.4
MD07G1140100 Malus domestica HOM05D005745 ORTHO05D006857 9.2e-19 99.0 65 73.8
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 8.1e-15 85.9 237 29.1
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 1.1e-14 85.5 346 28.3
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 1.8e-14 84.7 90 54.4
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 1.2e-10 72.0 298 26.5
ATR0594G209 Amborella trichopoda HOM05D005745 ORTHO05D006857 9.0e-06 55.8 33 75.8


User provided reference genes

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