Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2614.0 1323 100.0
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2594.3 1323 99.4
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 2587.8 1323 99.1
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2574.7 1323 98.3
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2561.2 1323 98.0
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 2419.4 1323 92.5
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2415.6 1241 98.5
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 2171.7 1323 82.7
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 2106.6 1329 80.4
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 2071.2 1326 78.7
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1917.9 1328 73.2
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1902.9 1328 72.8
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1897.5 1325 73.1
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1860.5 1327 70.8
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1847.0 1331 71.3
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1835.1 1333 70.8
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1834.3 1331 71.0
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1833.9 1330 70.3
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1822.4 1332 70.4
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1808.9 1329 70.1
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1804.6 1328 69.4
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1804.3 1333 69.0
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1801.9 1328 69.1
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1782.7 1335 68.0
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1776.5 1329 68.9
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1774.2 1335 67.5
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1773.1 1249 73.2
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1763.0 1246 72.2
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1752.6 1326 67.5
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1746.1 1331 66.6
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1738.0 1329 66.4
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1732.2 1327 65.7
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1726.1 1325 66.2
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1723.8 1322 66.8
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1710.7 1329 65.3
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1708.3 1278 67.9
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1706.4 1324 65.6
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1704.9 1330 65.6
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1700.3 1326 66.0
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1689.9 1328 64.8
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1680.6 1270 67.2
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1678.3 1324 64.2
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1672.1 1326 64.3
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1671.4 1325 64.5
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1669.4 1330 64.3
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1666.7 1325 64.2
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1666.4 1325 64.3
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1662.1 1279 65.4
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1659.0 1340 62.3
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1657.1 1323 65.6
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1645.2 1350 63.0
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1643.6 1339 62.5
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1643.6 1323 64.2
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1643.6 1324 63.6
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1642.9 1344 63.6
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1633.6 1331 63.2
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1628.6 1333 62.4
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1621.3 1328 62.2
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1619.8 1240 65.7
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1616.7 1332 61.8
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1616.3 1334 62.4
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1608.2 1096 74.8
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1604.7 1266 63.6
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1598.9 1345 61.6
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1597.4 1345 61.1
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1591.6 1333 61.1
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1577.8 1336 61.0
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1575.5 1332 61.1
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1575.1 1331 61.3
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1572.8 1333 61.1
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1571.6 1332 61.0
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1571.2 1336 60.9
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1570.1 1330 60.8
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1569.7 1337 60.8
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1569.3 1100 71.3
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1555.8 1330 60.9
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1549.3 1332 60.0
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1540.0 1365 58.8
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1530.8 1325 59.2
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1516.5 1330 59.8
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1506.9 1286 62.5
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1503.0 1127 66.4
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1501.5 1194 63.1
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1498.8 1327 59.7
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1490.3 1328 59.2
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1488.4 1109 66.9
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1486.9 1327 58.8
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1454.9 1091 67.6
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1410.2 1339 54.0
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1401.7 1167 61.3
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1391.7 1559 50.0
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1378.6 1326 58.0
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1358.6 1323 53.5
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1343.9 1350 53.3
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1333.5 1332 53.8
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1324.3 945 70.3
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 0.0e+00 1193.7 909 66.9
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1174.1 864 69.6
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 0.0e+00 1157.9 1332 49.8
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 0.0e+00 1090.5 1282 47.9
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1078.9 756 72.6
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 3.0e-249 866.3 1369 37.7
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 3.7e-231 806.2 858 49.2
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 4.5e-229 799.3 1186 40.2
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 9.5e-227 791.6 1195 38.7
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 3.4e-224 783.1 1302 37.1
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 4.7e-210 736.1 809 51.5
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 7.4e-155 552.7 1619 29.3
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 2.7e-141 507.7 358 71.8
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 2.6e-136 491.1 459 56.9
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 2.2e-130 471.5 379 62.0
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 2.5e-94 351.7 1496 26.5
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 8.6e-87 326.6 1562 26.2
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 4.1e-81 307.8 302 54.0
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 7.1e-81 307.0 255 55.7
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 5.6e-78 297.4 317 53.3
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 4.5e-67 261.2 196 71.4
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 7.6e-59 233.8 233 52.8
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 1.1e-57 229.9 1229 24.5
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 3.5e-56 224.9 223 53.8
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 3.0e-55 221.9 167 71.9
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 4.2e-49 201.4 1359 24.4
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 2.5e-41 175.6 130 69.2
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 1.5e-38 166.4 289 42.6
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 4.3e-38 164.9 121 69.4
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 5.7e-30 137.9 139 56.8


User provided reference genes

Program Settings