Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G1244 Fragaria x ananassa HOM05D001392 ORTHO05D208270 4.8e-67 258.1 167 100.0
Sed0018333 Sechium edule HOM05D001392 ORTHO05D003370 3.0e-13 79.3 43 90.7
CiPaw.04G068200 Carya illinoinensis HOM05D001392 ORTHO05D003370 4.0e-13 79.0 41 90.2
CsaV3_5G005900 Cucumis sativus L. HOM05D001392 ORTHO05D003370 6.7e-13 78.2 43 88.4
MD01G1196000 Malus domestica HOM05D001392 ORTHO05D003370 8.8e-13 77.8 41 87.8
MD07G1262800 Malus domestica HOM05D001392 ORTHO05D003370 8.8e-13 77.8 41 87.8
QL09p048218 Quercus lobata HOM05D001392 ORTHO05D003370 8.8e-13 77.8 41 90.2
Migut.L01675 Erythranthe guttata HOM05D001392 ORTHO05D003370 1.2e-12 77.4 41 87.8
Gohir.A08G018000 Gossypium hirsutum HOM05D001392 ORTHO05D003370 1.2e-12 77.4 41 87.8
Gohir.D08G028600 Gossypium hirsutum HOM05D001392 ORTHO05D003370 1.2e-12 77.4 41 87.8
Gorai.004G025700 Gossypium raimondii HOM05D001392 ORTHO05D003370 1.2e-12 77.4 41 87.8
MSTRG.26714 Avicennia marina HOM05D001392 ORTHO05D003370 1.5e-12 77.0 41 90.2
THA.LOC104824111 Tarenaya hassleriana HOM05D001392 ORTHO05D003370 1.5e-12 77.0 41 85.4
Haze_13766 Corylus avellana HOM05D001392 ORTHO05D003370 2.0e-12 76.6 41 87.8
Manes.09G005800 Manihot esculenta HOM05D001392 ORTHO05D003370 2.0e-12 76.6 41 87.8
CARHR015110 Cardamine hirsuta HOM05D001392 ORTHO05D003370 2.6e-12 76.3 41 87.8
Prupe.2G289400 Prunus persica HOM05D001392 ORTHO05D003370 2.6e-12 76.3 41 87.8
QL09p015520 Quercus lobata HOM05D001392 ORTHO05D003370 2.6e-12 76.3 41 90.2
Thecc.09G180600 Theobroma cacao HOM05D001392 ORTHO05D003370 3.3e-12 75.9 41 85.4
Carub.0001s1437 Capsella rubella HOM05D001392 ORTHO05D003370 5.7e-12 75.1 41 87.8
Cfa008272 Carpinus fangiana HOM05D001392 ORTHO05D003370 5.7e-12 75.1 41 85.4
LjContig00238g0000416 Lotus japonicus HOM05D001392 ORTHO05D003370 5.7e-12 75.1 41 87.8
MBI18_g01867_MAGBIO Magnolia biondii HOM05D001392 ORTHO05D003370 5.7e-12 75.1 41 87.8
Ah.03g134560 Amaranthus hybridus HOM05D001392 ORTHO05D003370 7.5e-12 74.7 41 85.4
BcaB02g06531 Brassica carinata HOM05D001392 ORTHO05D003370 7.5e-12 74.7 41 85.4
BcaC05g25377 Brassica carinata HOM05D001392 ORTHO05D003370 7.5e-12 74.7 41 85.4
A06p10670 Brassica napus HOM05D001392 ORTHO05D003370 7.5e-12 74.7 41 85.4
C05p12580 Brassica napus HOM05D001392 ORTHO05D003370 7.5e-12 74.7 41 85.4
BolC5t30002H Brassica oleracea HOM05D001392 ORTHO05D003370 7.5e-12 74.7 41 85.4
BraA06t24247Z Brassica rapa HOM05D001392 ORTHO05D003370 7.5e-12 74.7 41 85.4
Duzib170G0790 Durio zibethinus HOM05D001392 ORTHO05D003370 7.5e-12 74.7 41 85.4
MD17G1256800 Malus domestica HOM05D001392 ORTHO05D003370 7.5e-12 74.7 41 85.4
Potri.007G004100 Populus trichocarpa HOM05D001392 ORTHO05D003370 7.5e-12 74.7 41 85.4
THA.LOC104805109 Tarenaya hassleriana HOM05D001392 ORTHO05D003370 7.5e-12 74.7 41 85.4
ATR0782G056 Amborella trichopoda HOM05D001392 ORTHO05D003370 9.7e-12 74.3 41 85.4
AT1G14610 Arabidopsis thaliana HOM05D001392 ORTHO05D003370 9.7e-12 74.3 41 85.4
BcaC07g41556 Brassica carinata HOM05D001392 ORTHO05D003370 9.7e-12 74.3 41 85.4
A09p61990 Brassica napus HOM05D001392 ORTHO05D003370 9.7e-12 74.3 41 85.4
C08p45570 Brassica napus HOM05D001392 ORTHO05D003370 9.7e-12 74.3 41 85.4
BolC8t52110H Brassica oleracea HOM05D001392 ORTHO05D003370 9.7e-12 74.3 41 85.4
BraA09t41562Z Brassica rapa HOM05D001392 ORTHO05D003370 9.7e-12 74.3 41 85.4
Sp1g12970 Schrenkiella parvula HOM05D001392 ORTHO05D003370 9.7e-12 74.3 41 85.4
Oeu001345.1 Olea europaea HOM05D001392 ORTHO05D003370 1.3e-11 73.9 41 85.4
TAR629G1395 Trochodendron aralioides HOM05D001392 ORTHO05D003370 1.3e-11 73.9 41 85.4
Prupe.1G576900 Prunus persica HOM05D001392 ORTHO05D003370 1.7e-11 73.6 41 85.4
Cpa.g.sc2.74 Carica papaya HOM05D001392 ORTHO05D003370 2.2e-11 73.2 41 82.9
Ca_10801_v3 Cicer arietinum L. HOM05D001392 ORTHO05D003370 2.2e-11 73.2 41 85.4
Eucgr.E01106 Eucalyptus grandis HOM05D001392 ORTHO05D003370 2.2e-11 73.2 41 82.9
Nitab4.5_0000669g0060 Nicotiana tabacum HOM05D001392 ORTHO05D003370 2.2e-11 73.2 41 85.4
Nitab4.5_0008025g0020 Nicotiana tabacum HOM05D001392 ORTHO05D003370 2.2e-11 73.2 41 85.4
Phvul.007G066400 Phaseolus vulgaris HOM05D001392 ORTHO05D003370 2.2e-11 73.2 41 85.4
SHI28861 Sapria himalayana HOM05D001392 ORTHO05D003370 2.2e-11 73.2 41 85.4
TWI81G0741 Tripterygium wilfordii HOM05D001392 ORTHO05D003370 2.2e-11 73.2 41 80.5
Actinidia34544 Actinidia chinensis HOM05D001392 ORTHO05D003370 2.8e-11 72.8 41 82.9
Aqoxy2G03097 Aquilegia oxysepala HOM05D001392 ORTHO05D003370 2.8e-11 72.8 41 82.9
Aqoxy7G00465 Aquilegia oxysepala HOM05D001392 ORTHO05D003370 2.8e-11 72.8 41 82.9
Lsat_1_v5_gn_5_61861 Lactuca sativa HOM05D001392 ORTHO05D003370 2.8e-11 72.8 41 80.5
Lsat_1_v5_gn_7_60741 Lactuca sativa HOM05D001392 ORTHO05D003370 2.8e-11 72.8 41 80.5
SGA_v2.0_scaffold35G14149 Striga asiatica HOM05D001392 ORTHO05D003370 2.8e-11 72.8 41 82.9
Aa31LG1G460 Aethionema arabicum HOM05D001392 ORTHO05D003370 3.7e-11 72.4 41 82.9
AL1G26580 Arabidopsis lyrata HOM05D001392 ORTHO05D003370 3.7e-11 72.4 41 85.4
Os03g0694900 Oryza sativa ssp. japonica HOM05D001392 ORTHO05D003370 3.7e-11 72.4 41 82.9
FvH4_7g28940 Fragaria vesca HOM05D001392 ORTHO05D003370 4.8e-11 72.0 41 82.9
FAN03G1857 Fragaria x ananassa HOM05D001392 ORTHO05D003370 4.8e-11 72.0 41 82.9
FAN06G3412 Fragaria x ananassa HOM05D001392 ORTHO05D003370 4.8e-11 72.0 41 82.9
FAN06G3456 Fragaria x ananassa HOM05D001392 ORTHO05D003370 4.8e-11 72.0 41 82.9
FAN10G3015 Fragaria x ananassa HOM05D001392 ORTHO05D003370 4.8e-11 72.0 41 82.9
FAN23G3091 Fragaria x ananassa HOM05D001392 ORTHO05D003370 4.8e-11 72.0 41 82.9
HanXRQChr14g0461381 Helianthus annuus HOM05D001392 ORTHO05D003370 4.8e-11 72.0 41 80.5
MD15G1433500 Malus domestica HOM05D001392 ORTHO05D003370 4.8e-11 72.0 41 80.5
Psat6g201440 Pisum sativum HOM05D001392 ORTHO05D003370 4.8e-11 72.0 41 82.9
RcHm_v2.0_Chr1g0376611 Rosa chinensis HOM05D001392 ORTHO05D003370 4.8e-11 72.0 41 82.9
Solyc09g007540.3 Solanum lycopersicum HOM05D001392 ORTHO05D003370 4.8e-11 72.0 41 82.9
Sopen09g002410 Solanum pennellii HOM05D001392 ORTHO05D003370 4.8e-11 72.0 41 82.9
TPR.G17429 Trifolium pratense HOM05D001392 ORTHO05D003370 4.8e-11 72.0 41 82.9
TPR.G34728 Trifolium pratense HOM05D001392 ORTHO05D003370 4.8e-11 72.0 41 82.9
VMungo0720G1540 Vigna mungo HOM05D001392 ORTHO05D003370 4.8e-11 72.0 41 82.9
Migut.J00558 Erythranthe guttata HOM05D001392 ORTHO05D003370 6.3e-11 71.6 41 82.9
Glyma.10G239500 Glycine max HOM05D001392 ORTHO05D003370 6.3e-11 71.6 41 82.9
Lalb_Chr12g0210011 Lupinus albus HOM05D001392 ORTHO05D003370 6.3e-11 71.6 41 82.9
Medtr1g101620 Medicago truncatula HOM05D001392 ORTHO05D003370 6.3e-11 71.6 41 82.9
CAN.G1091.5 Capsicum annuum HOM05D001392 ORTHO05D003370 8.2e-11 71.2 41 82.9
AUR62002803 Chenopodium quinoa HOM05D001392 ORTHO05D003370 8.2e-11 71.2 41 80.5
AUR62014110 Chenopodium quinoa HOM05D001392 ORTHO05D003370 8.2e-11 71.2 41 80.5
ClCG01G005680 Citrullus lanatus HOM05D001392 ORTHO05D003370 8.2e-11 71.2 43 86.0
Dinv36391 Davidia involucrata HOM05D001392 ORTHO05D003370 8.2e-11 71.2 41 80.5
Thhalv10006628m.g Eutrema salsugineum HOM05D001392 ORTHO05D003370 8.2e-11 71.2 41 82.9
Sc07g0001630 Simmondsia chinensis HOM05D001392 ORTHO05D003370 8.2e-11 71.2 41 80.5
Actinidia34075 Actinidia chinensis HOM05D001392 ORTHO05D003370 1.1e-10 70.9 41 80.5
A08p27330 Brassica napus HOM05D001392 ORTHO05D003370 1.1e-10 70.9 41 80.5
A08p31910 Brassica napus HOM05D001392 ORTHO05D003370 1.1e-10 70.9 41 80.5
C08p16790 Brassica napus HOM05D001392 ORTHO05D003370 1.1e-10 70.9 41 80.5
BolC8t49300H Brassica oleracea HOM05D001392 ORTHO05D003370 1.1e-10 70.9 41 80.5
BraA08t34676Z Brassica rapa HOM05D001392 ORTHO05D003370 1.1e-10 70.9 41 80.5
PGR031G3606 Punica granatum HOM05D001392 ORTHO05D003370 1.1e-10 70.9 41 82.9
Carub.0005s0101 Capsella rubella HOM05D001392 ORTHO05D003370 1.4e-10 70.5 41 78.0
CARHR260940 Cardamine hirsuta HOM05D001392 ORTHO05D003370 1.4e-10 70.5 41 75.6
FAN03G1076 Fragaria x ananassa HOM05D001392 ORTHO05D003370 1.4e-10 70.5 41 80.5
Nn8g40729 Nelumbo nucifera HOM05D001392 ORTHO05D003370 1.4e-10 70.5 41 82.9
Nitab4.5_0000203g0010 Nicotiana tabacum HOM05D001392 ORTHO05D003370 1.4e-10 70.5 42 81.0
Peaxi162Scf00169g00036 Petunia axillaris HOM05D001392 ORTHO05D003370 1.4e-10 70.5 41 82.9
MELO3C005366.2 Cucumis melo HOM05D001392 ORTHO05D003370 1.8e-10 70.1 43 83.7
Dinv31233 Davidia involucrata HOM05D001392 ORTHO05D003370 1.8e-10 70.1 41 80.5
Eucgr.F04425 Eucalyptus grandis HOM05D001392 ORTHO05D003370 1.8e-10 70.1 41 80.5
Lsat_1_v5_gn_7_60700 Lactuca sativa HOM05D001392 ORTHO05D003370 1.8e-10 70.1 41 78.0
Os03g0335600 Oryza sativa ssp. japonica HOM05D001392 ORTHO05D003370 1.8e-10 70.1 43 74.4
Peaxi162Scf00079g00089 Petunia axillaris HOM05D001392 ORTHO05D003370 1.8e-10 70.1 41 82.9
Peaxi162Scf00254g00012 Petunia axillaris HOM05D001392 ORTHO05D003370 1.8e-10 70.1 41 82.9
Pp3c2_9830 Physcomitrium patens HOM05D001392 ORTHO05D003370 1.8e-10 70.1 41 78.0
Zm00001eb104290 Zea mays HOM05D001392 ORTHO05D003370 1.8e-10 70.1 43 76.7
BraA08t35113Z Brassica rapa HOM05D001392 ORTHO05D003370 2.4e-10 69.7 41 78.0
Thhalv10006653m.g Eutrema salsugineum HOM05D001392 ORTHO05D003370 2.4e-10 69.7 41 80.5
unitig_744.g24676 Utricularia gibba HOM05D001392 ORTHO05D003370 3.1e-10 69.3 41 78.0
ECA240G2105 Erigeron canadensis HOM05D001392 ORTHO05D003370 4.1e-10 68.9 41 75.6
PSO478G1977 Papaver somniferum HOM05D001392 ORTHO05D003370 4.1e-10 68.9 41 78.0
PSO782G2668 Papaver somniferum HOM05D001392 ORTHO05D003370 4.1e-10 68.9 41 78.0
BolC3t19544H Brassica oleracea HOM05D001392 ORTHO05D003370 5.3e-10 68.6 41 78.0
Migut.J00692 Erythranthe guttata HOM05D001392 ORTHO05D003370 5.3e-10 68.6 41 80.5
Potri.005G087850 Populus trichocarpa HOM05D001392 ORTHO05D003370 7.0e-10 68.2 41 75.6
TWI15G0272 Tripterygium wilfordii HOM05D001392 ORTHO05D003370 7.0e-10 68.2 41 80.5
BraA07t29110Z Brassica rapa HOM05D001392 ORTHO05D003370 9.1e-10 67.8 41 70.7
Ciclev10004208m.g Citrus clementina HOM05D001392 ORTHO05D003370 9.1e-10 67.8 41 78.0
Lj9C302G3 Lonicera japonica HOM05D001392 ORTHO05D003370 9.1e-10 67.8 41 78.0
Cc06_g03770 Coffea canephora HOM05D001392 ORTHO05D003370 1.2e-09 67.4 41 78.0
AL3G41580 Arabidopsis lyrata HOM05D001392 ORTHO05D003370 2.0e-09 66.6 41 75.6
HanXRQChr03g0071441 Helianthus annuus HOM05D001392 ORTHO05D003370 2.0e-09 66.6 41 73.2
Os10g0506200 Oryza sativa ssp. japonica HOM05D001392 ORTHO05D003370 2.0e-09 66.6 43 72.1
BcaC06g35086 Brassica carinata HOM05D001392 ORTHO05D003370 2.7e-09 66.2 41 70.7
BolC7t42520H Brassica oleracea HOM05D001392 ORTHO05D003370 2.7e-09 66.2 41 70.7
Oeu022370.1 Olea europaea HOM05D001392 ORTHO05D003370 3.5e-09 65.9 40 80.0
SEGI_00245 Sequoiadendron giganteum HOM05D001392 ORTHO05D003370 3.5e-09 65.9 41 78.0
Peaxi162Scf00182g00085 Petunia axillaris HOM05D001392 ORTHO05D003370 4.5e-09 65.5 41 80.5
AagrBONN_evm.TU.Sc2ySwM_344.3387 Anthoceros agrestis HOM05D001392 ORTHO05D003370 5.9e-09 65.1 41 73.2
Nitab4.5_0004484g0010 Nicotiana tabacum HOM05D001392 ORTHO05D003370 5.9e-09 65.1 42 76.2
SEGI_04262 Sequoiadendron giganteum HOM05D001392 ORTHO05D003370 5.9e-09 65.1 41 78.0
A07p13380 Brassica napus HOM05D001392 ORTHO05D003370 7.7e-09 64.7 41 68.3
Cre12.g537100 Chlamydomonas reinhardtii HOM05D001392 ORTHO05D003370 7.7e-09 64.7 41 68.3
BcaC07g38749 Brassica carinata HOM05D001392 ORTHO05D003370 1.0e-08 64.3 47 70.2
BcaNung05660 Brassica carinata HOM05D001392 ORTHO05D003370 1.0e-08 64.3 47 70.2
RcHm_v2.0_Chr7g0232241 Rosa chinensis HOM05D001392 ORTHO05D003370 1.7e-08 63.5 41 70.7
SMO358G0706 Selaginella moellendorffii HOM05D001392 ORTHO05D003370 1.7e-08 63.5 41 68.3
RcHm_v2.0_Chr7g0232301 Rosa chinensis HOM05D001392 ORTHO05D003370 6.5e-08 61.6 39 71.8
FvH4_7g01700 Fragaria vesca HOM05D001392 ORTHO05D003370 1.1e-07 60.8 41 70.7
CARHR024710 Cardamine hirsuta HOM05D001392 ORTHO05D003370 1.9e-07 60.1 40 75.0
Nitab4.5_0004729g0020 Nicotiana tabacum HOM05D001392 ORTHO05D008832 2.5e-07 59.7 46 67.4
MCO07G752 Micromonas commoda HOM05D001392 ORTHO05D003370 4.2e-07 58.9 41 63.4
SMO165G0098 Selaginella moellendorffii HOM05D001392 ORTHO05D003370 5.5e-07 58.5 43 60.5
HPP92_001073 Vanilla planifolia HOM05D001392 ORTHO05D003370 5.5e-07 58.5 31 87.1
CANSAT56G1922 Cannabis sativa HOM05D001392 ORTHO05D003370 2.1e-06 56.6 41 68.3
CBR_g31285 Chara braunii HOM05D001392 ORTHO05D003370 2.7e-06 56.2 43 58.1
Oeu006734.3 Olea europaea HOM05D001392 ORTHO05D003370 6.1e-06 55.1 81 44.4


User provided reference genes

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