Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FvH4_7g27644 Fragaria vesca HOM05D002696 ORTHO05D003940 3.5e-50 201.4 110 100.0
FAN06G0680 Fragaria x ananassa HOM05D002696 ORTHO05D019089 3.5e-50 201.4 110 100.0
FAN06G1338 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.5e-50 201.4 110 100.0
FvH4_7g27690 Fragaria vesca HOM05D002696 ORTHO05D019089 1.0e-49 199.9 110 99.1
FvH4_7g27370 Fragaria vesca HOM05D002696 ORTHO05D003940 2.2e-44 182.2 101 97.0
FAN03G1522 Fragaria x ananassa HOM05D002696 ORTHO05D003940 2.2e-44 182.2 101 96.0
FAN01G1209 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.7e-44 181.4 101 96.0
FvH4_7g25682 Fragaria vesca HOM05D002696 ORTHO05D003940 6.4e-44 180.6 101 96.0
RcHm_v2.0_Chr1g0374201 Rosa chinensis HOM05D002696 ORTHO05D003940 2.4e-43 178.7 101 95.0
FAN06G1881 Fragaria x ananassa HOM05D002696 ORTHO05D003940 4.1e-43 177.9 109 89.0
FAN06G3257 Fragaria x ananassa HOM05D002696 ORTHO05D003940 4.1e-43 177.9 101 95.0
FvH4_7g27601 Fragaria vesca HOM05D002696 ORTHO05D019089 9.2e-43 176.8 101 94.1
FAN06G1128 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.7e-41 172.6 101 92.1
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 2.1e-39 165.6 93 94.6
FAN06G4793 Fragaria x ananassa HOM05D002696 ORTHO05D019089 3.6e-39 164.9 93 94.6
MD07G1252800 Malus domestica HOM05D002696 ORTHO05D003940 2.6e-37 158.7 101 83.2
MD01G1182300 Malus domestica HOM05D002696 ORTHO05D003940 4.4e-37 157.9 101 84.2
Prupe.2G276400 Prunus persica HOM05D002696 ORTHO05D003940 1.3e-36 156.4 101 82.2
FAN06G0900 Fragaria x ananassa HOM05D002696 ORTHO05D003940 8.3e-36 153.7 81 98.8
FAN10G2221 Fragaria x ananassa HOM05D005822 ORTHO05D007267 1.9e-35 152.5 101 88.1
FvH4_7g27350 Fragaria vesca HOM05D002696 ORTHO05D003940 3.2e-35 151.8 82 97.6
Haze_13890 Corylus avellana HOM05D002696 ORTHO05D003940 5.4e-35 151.0 101 79.2
CANSAT56G0989 Cannabis sativa HOM05D002696 ORTHO05D003940 1.2e-34 149.8 101 76.2
Cfa008155 Carpinus fangiana HOM05D002696 ORTHO05D003940 2.1e-34 149.1 100 79.0
CiPaw.04G059400 Carya illinoinensis HOM05D002696 ORTHO05D003940 1.0e-33 146.7 101 78.2
Potri.003G108400 Populus trichocarpa HOM05D002696 ORTHO05D003940 1.7e-33 146.0 100 75.0
Atru.chr8.1045 Acer truncatum HOM05D002696 ORTHO05D003940 5.0e-33 144.4 101 74.3
Ciclev10004183m.g Citrus clementina HOM05D002696 ORTHO05D003940 2.5e-32 142.1 101 75.2
Dinv28583 Davidia involucrata HOM05D002696 ORTHO05D019089 5.6e-32 141.0 99 77.8
QL09p005526 Quercus lobata HOM05D002696 ORTHO05D003940 7.3e-32 140.6 99 75.8
QL09p005648 Quercus lobata HOM05D002696 ORTHO05D003940 7.3e-32 140.6 99 75.8
Lj3g0024722 Lotus japonicus HOM05D002696 ORTHO05D003940 4.7e-31 137.9 101 73.3
Dinv06564 Davidia involucrata HOM05D002696 ORTHO05D003940 1.8e-30 136.0 100 75.0
Lj1A979T80 Lonicera japonica HOM05D002696 ORTHO05D003940 3.1e-30 135.2 100 74.0
Atru.chr1.739 Acer truncatum HOM05D002696 ORTHO05D003940 4.0e-30 134.8 101 69.3
Rhsim03G0166400 Rhododendron simsii HOM05D002696 ORTHO05D003940 4.0e-30 134.8 102 71.6
FAN06G4003 Fragaria x ananassa HOM05D002696 ORTHO05D003940 6.8e-30 134.0 101 76.2
CSS0019414 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 8.9e-30 133.7 99 73.7
CSS0021515 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 8.9e-30 133.7 99 73.7
MBI15_g05590_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 1.2e-29 133.3 101 72.3
Eucgr.A02895 Eucalyptus grandis HOM05D002696 ORTHO05D003940 1.5e-29 132.9 101 68.3
FAN10G3229 Fragaria x ananassa HOM05D007222 ORTHO05D010132 1.5e-29 132.9 72 98.6
TAR633G1694 Trochodendron aralioides HOM05D002696 ORTHO05D003940 2.0e-29 132.5 101 73.3
GSVIVG01018715001 Vitis vinifera HOM05D002696 ORTHO05D003940 2.6e-29 132.1 101 71.3
Potri.001G125000 Populus trichocarpa HOM05D002696 ORTHO05D003940 4.4e-29 131.3 91 74.7
Cpa.g.sc3.331 Carica papaya HOM05D002696 ORTHO05D003940 5.8e-29 131.0 101 69.3
Thecc.03G154800 Theobroma cacao HOM05D002696 ORTHO05D003940 7.5e-29 130.6 101 70.3
FAN06G4118 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.3e-28 129.8 89 80.9
Aqoxy2G00559 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 1.7e-28 129.4 101 67.3
Lalb_Chr03g0034121 Lupinus albus HOM05D002696 ORTHO05D003940 1.7e-28 129.4 95 72.6
arahy.Tifrunner.gnm1.ann1.BTDY3I Arachis hypogaea HOM05D002696 ORTHO05D003940 2.2e-28 129.0 100 69.0
PGR042G0896 Punica granatum HOM05D002696 ORTHO05D003940 2.2e-28 129.0 101 69.3
Manes.14G036500 Manihot esculenta HOM05D002696 ORTHO05D003940 2.9e-28 128.6 90 73.3
VMungo1127G1101 Vigna mungo HOM05D002696 ORTHO05D003940 2.9e-28 128.6 101 68.3
PSO423G0248 Papaver somniferum HOM05D002696 ORTHO05D003940 4.9e-28 127.9 101 67.3
Ca_23897_v3 Cicer arietinum L. HOM05D002696 ORTHO05D003940 8.3e-28 127.1 90 75.6
DCAR_020185 Daucus carota HOM05D002696 ORTHO05D003940 8.3e-28 127.1 100 68.0
FAN10G0424 Fragaria x ananassa HOM05D002696 ORTHO05D003940 8.3e-28 127.1 89 79.8
Phvul.011G211100 Phaseolus vulgaris HOM05D002696 ORTHO05D003940 8.3e-28 127.1 101 67.3
Sc10g0002620 Simmondsia chinensis HOM05D002696 ORTHO05D003940 1.1e-27 126.7 95 68.4
FAN06G0913 Fragaria x ananassa HOM05D002696 ORTHO05D019089 1.4e-27 126.3 81 85.2
Nn4g25061 Nelumbo nucifera HOM05D002696 ORTHO05D003940 1.4e-27 126.3 101 66.3
PSO339G0313 Papaver somniferum HOM05D002696 ORTHO05D003940 1.4e-27 126.3 101 65.3
PSO384G2493 Papaver somniferum HOM05D002696 ORTHO05D003940 1.4e-27 126.3 101 65.3
ClCG05G007340 Citrullus lanatus HOM05D002696 ORTHO05D003940 1.9e-27 125.9 100 69.0
FAN03G1343 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.9e-27 125.9 101 72.3
arahy.Tifrunner.gnm1.ann1.P8M8R5 Arachis hypogaea HOM05D002696 ORTHO05D003940 3.2e-27 125.2 100 68.0
Oeu022477.1 Olea europaea HOM05D002696 ORTHO05D003940 4.1e-27 124.8 101 68.3
Gohir.A03G059100 Gossypium hirsutum HOM05D002696 ORTHO05D003940 7.1e-27 124.0 100 67.0
Gohir.D03G107000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 7.1e-27 124.0 100 67.0
Gorai.003G113400 Gossypium raimondii HOM05D002696 ORTHO05D003940 7.1e-27 124.0 100 67.0
Actinidia20692 Actinidia chinensis HOM05D002696 ORTHO05D003940 9.2e-27 123.6 97 69.1
CSS0022672 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 9.2e-27 123.6 101 67.3
Sp2g25590 Schrenkiella parvula HOM05D002696 ORTHO05D003940 1.6e-26 122.9 95 68.4
CAN.G48.39 Capsicum annuum HOM05D002696 ORTHO05D003940 2.1e-26 122.5 100 66.0
Migut.F00482 Erythranthe guttata HOM05D002696 ORTHO05D003940 2.7e-26 122.1 100 67.0
Sed0008600 Sechium edule HOM05D002696 ORTHO05D003940 3.5e-26 121.7 89 73.0
MELO3C006807.2 Cucumis melo HOM05D002696 ORTHO05D003940 1.0e-25 120.2 97 68.0
Nitab4.5_0003490g0070 Nicotiana tabacum HOM05D002696 ORTHO05D003940 1.0e-25 120.2 100 66.0
TPR.G1877 Trifolium pratense HOM05D002696 ORTHO05D003940 1.0e-25 120.2 82 76.8
ATR0618G100 Amborella trichopoda HOM05D002696 ORTHO05D003940 1.7e-25 119.4 102 62.7
Nitab4.5_0002816g0060 Nicotiana tabacum HOM05D002696 ORTHO05D003940 2.3e-25 119.0 101 64.4
Solyc03g093260.3 Solanum lycopersicum HOM05D002696 ORTHO05D003940 2.3e-25 119.0 100 65.0
Sopen03g024050 Solanum pennellii HOM05D002696 ORTHO05D003940 2.3e-25 119.0 100 65.0
Ah.16g103870 Amaranthus hybridus HOM05D002696 ORTHO05D003940 5.1e-25 117.9 100 62.0
HanXRQChr05g0144341 Helianthus annuus HOM05D002696 ORTHO05D003940 5.1e-25 117.9 100 65.0
AL8G39240 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 8.6e-25 117.1 95 65.3
COL.COLO4_14108 Corchorus olitorius HOM05D002696 ORTHO05D003940 8.6e-25 117.1 90 70.0
ECA234G3187 Erigeron canadensis HOM05D002696 ORTHO05D003940 8.6e-25 117.1 100 62.0
Medtr8g037325 Medicago truncatula HOM05D002696 ORTHO05D003940 8.6e-25 117.1 83 73.5
Zm00001eb144310 Zea mays HOM05D002696 ORTHO05D003940 1.1e-24 116.7 100 64.0
BcaB02g09643 Brassica carinata HOM05D002696 ORTHO05D003940 2.5e-24 115.5 95 64.2
CARHR276190 Cardamine hirsuta HOM05D002696 ORTHO05D003940 2.5e-24 115.5 100 61.0
BolC3t18703H Brassica oleracea HOM05D002696 ORTHO05D003940 3.3e-24 115.2 96 63.5
Carub.0008s2309 Capsella rubella HOM05D002696 ORTHO05D003940 3.3e-24 115.2 100 61.0
vmacro06809 Vaccinium macrocarpon HOM05D002696 ORTHO05D003940 3.3e-24 115.2 99 66.7
Glyma.13G202100 Glycine max HOM05D002696 ORTHO05D003940 4.3e-24 114.8 82 73.2
CsaV3_3G016100 Cucumis sativus L. HOM05D002696 ORTHO05D003940 5.6e-24 114.4 93 67.7
Duzib205G1343 Durio zibethinus HOM05D002696 ORTHO05D003940 9.5e-24 113.6 91 67.0
SGA_v2.0_scaffold2G01216 Striga asiatica HOM05D002696 ORTHO05D003940 9.5e-24 113.6 96 65.6
AUR62022940 Chenopodium quinoa HOM05D002696 ORTHO05D003940 1.2e-23 113.2 96 61.5
CDE12G0096 Ceratophyllum demersum HOM05D002696 ORTHO05D003940 3.6e-23 111.7 101 59.4
CSS0036675 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 4.7e-23 111.3 100 66.0
AUR62012301 Chenopodium quinoa HOM05D002696 ORTHO05D003940 4.7e-23 111.3 95 61.1
Lalb_Chr01g0008021 Lupinus albus HOM05D002696 ORTHO05D003940 4.7e-23 111.3 80 70.0
TAR633G0051 Trochodendron aralioides HOM05D002696 ORTHO05D003940 4.7e-23 111.3 101 64.4
Glyma.12G236600 Glycine max HOM05D002696 ORTHO05D003940 8.1e-23 110.5 82 69.5
FvH4_7g28372 Fragaria vesca HOM05D002696 ORTHO05D023279 1.1e-22 110.2 107 64.5
Sabra01G0096100 Salix brachista HOM05D002696 ORTHO05D003940 1.4e-22 109.8 80 71.2
Hund13894 Selenicereus undatus HOM05D002696 ORTHO05D003940 2.4e-22 109.0 86 64.0
Duzib068G1251 Durio zibethinus HOM05D002696 ORTHO05D003940 8.9e-22 107.1 82 68.3
BcaC01g02465 Brassica carinata HOM05D002696 ORTHO05D003940 4.4e-21 104.8 90 61.1
A06p29110 Brassica napus HOM05D002696 ORTHO05D003940 4.4e-21 104.8 90 61.1
C03p64490 Brassica napus HOM05D002696 ORTHO05D003940 4.4e-21 104.8 90 61.1
BraA06t25859Z Brassica rapa HOM05D002696 ORTHO05D003940 4.4e-21 104.8 90 61.1
Lsat_1_v5_gn_8_8781 Lactuca sativa HOM05D002696 ORTHO05D003940 5.8e-21 104.4 84 67.9
EL10Ac2g04892 Beta vulgaris HOM05D002696 ORTHO05D003940 7.6e-21 104.0 86 62.8
THA.LOC104818260 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 9.9e-21 103.6 84 64.3
HPP92_013639 Vanilla planifolia HOM05D002696 ORTHO05D003940 2.2e-20 102.4 101 60.4
Aqoxy7G02846 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 2.9e-20 102.1 90 58.9
AT5G62410 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 2.4e-19 99.0 77 64.9
Dinv28586 Davidia involucrata HOM05D002696 ORTHO05D019089 2.4e-19 99.0 78 71.8
Peaxi162Scf00241g00034 Petunia axillaris HOM05D002696 ORTHO05D003940 5.4e-19 97.8 79 65.8
Thhalv10003541m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 1.6e-18 96.3 75 65.3
THA.LOC104821413 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 1.6e-18 96.3 78 61.5
Psat4g148760 Pisum sativum HOM05D002696 ORTHO05D003940 3.5e-18 95.1 73 67.1
HanXRQChr08g0223041 Helianthus annuus HOM05D002696 ORTHO05D003940 4.6e-18 94.7 89 58.4
SalBow8G1580 Salvia bowleyana HOM05D002696 ORTHO05D003940 1.0e-17 93.6 99 50.5
Os01g0904400 Oryza sativa ssp. japonica HOM05D002696 ORTHO05D003940 1.7e-17 92.8 81 63.0
FAN06G3863 Fragaria x ananassa HOM05D002696 ORTHO05D011600 3.9e-17 91.7 48 97.9
MSTRG.8828 Avicennia marina HOM05D002696 ORTHO05D003940 6.6e-17 90.9 75 65.3
SEGI_28050 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 9.6e-16 87.0 84 56.0
BraA06t25103Z Brassica rapa HOM05D002696 ORTHO05D003940 2.1e-15 85.9 76 56.6
SEGI_01462 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 2.1e-15 85.9 99 50.5
AT3G47460 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 1.1e-14 83.6 100 46.0
C03p71600 Brassica napus HOM05D002696 ORTHO05D003940 1.4e-14 83.2 75 57.3
BcaC01g01822 Brassica carinata HOM05D002696 ORTHO05D003940 1.8e-14 82.8 76 56.6
BolC3t19451H Brassica oleracea HOM05D002696 ORTHO05D003940 1.8e-14 82.8 76 56.6
SMO076G0001 Selaginella moellendorffii HOM05D002696 ORTHO05D003940 2.4e-14 82.4 100 46.0
Aa31LG4G16260 Aethionema arabicum HOM05D002696 ORTHO05D003940 5.2e-14 81.3 71 59.2
CARHR156100 Cardamine hirsuta HOM05D002696 ORTHO05D003940 5.2e-14 81.3 76 55.3
A06p20190 Brassica napus HOM05D002696 ORTHO05D003940 6.9e-14 80.9 71 57.7
Thhalv10010077m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 6.9e-14 80.9 71 57.7
Pp3c13_8840 Physcomitrium patens HOM05D002696 ORTHO05D003940 9.0e-14 80.5 87 50.6
Carub.0005s1355 Capsella rubella HOM05D002696 ORTHO05D003940 1.2e-13 80.1 70 55.7
Cc06_g23360 Coffea canephora HOM05D002696 ORTHO05D003940 2.6e-13 79.0 65 66.2
Sp5g14420 Schrenkiella parvula HOM05D002696 ORTHO05D003940 4.4e-13 78.2 71 56.3
BcaB01g00921 Brassica carinata HOM05D002696 ORTHO05D003940 5.8e-13 77.8 71 56.3
SGA_v2.0_scaffold44G16551 Striga asiatica HOM05D002696 ORTHO05D003940 5.8e-13 77.8 60 66.7
AL5G26680 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 2.2e-12 75.9 69 55.1
Gorai.001G049100 Gossypium raimondii HOM05D002696 ORTHO05D003940 2.9e-12 75.5 100 49.0
AagrBONN_evm.TU.Sc2ySwM_344.3408 Anthoceros agrestis HOM05D002696 ORTHO05D003940 1.4e-11 73.2 100 42.0
Mapoly0005s0174 Marchantia polymorpha HOM05D002696 ORTHO05D003940 1.9e-11 72.8 88 43.2
FAN06G2222 Fragaria x ananassa HOM05D002696 ORTHO05D003940 4.8e-07 58.2 36 77.8
FAN10G0261 Fragaria x ananassa HOM05D000009 ORTHO05D007267 6.2e-07 57.8 41 75.6
SGA_v2.0_scaffold46G17417 Striga asiatica HOM05D002696 ORTHO05D019089 5.3e-06 54.7 55 56.4


User provided reference genes

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