Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN06G0645 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.2e-169 597.4 364 100.0
FAN11G1841 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.3e-154 549.3 360 92.2
FAN09G3514 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.9e-153 546.2 363 94.5
FAN16G0123 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.0e-151 538.5 350 91.1
FAN16G0070 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.2e-136 490.3 316 98.4
FAN19G1643 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.6e-130 467.6 371 73.3
FAN09G0535 Fragaria x ananassa HOM05D003406 ORTHO05D004026 2.1e-128 463.0 352 88.1
FAN27G1752 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.4e-126 455.3 316 94.0
FAN14G3483 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.2e-108 395.6 212 90.6
FAN14G5538 Fragaria x ananassa HOM05D003406 ORTHO05D004026 4.8e-104 382.1 348 60.3
FAN11G4032 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.4e-103 380.6 212 88.2
FAN13G0969 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.1e-79 299.7 352 69.3
FvH4_5g25490 Fragaria vesca HOM05D003406 ORTHO05D004026 1.2e-78 297.7 352 69.0
FvH4_5g25550 Fragaria vesca HOM05D003406 ORTHO05D004026 1.2e-78 297.7 352 69.0
FAN18G4486 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.0e-77 292.4 352 68.5
FvH4_6g22190 Fragaria vesca HOM05D003406 ORTHO05D004026 2.2e-69 266.9 277 52.0
FAN23G2758 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.5e-69 265.4 202 99.5
FAN19G2386 Fragaria x ananassa HOM05D003406 ORTHO05D004026 5.9e-46 189.1 96 97.9
AagrBONN_evm.TU.Sc2ySwM_369.461 Anthoceros agrestis HOM05D003406 ORTHO05D004026 7.7e-46 188.7 280 55.7
FAN26G1924 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.7e-45 187.6 376 55.9
FAN06G4607 Fragaria x ananassa HOM05D003406 ORTHO05D004026 8.5e-45 185.3 384 49.0
Hma1.2p1_1396F.1_g280640 Hydrangea macrophylla HOM05D003406 ORTHO05D004026 1.5e-44 184.5 301 63.1
SGA_v2.0_scaffold124G33625 Striga asiatica HOM05D003406 ORTHO05D004026 1.4e-42 177.9 301 62.1
arahy.Tifrunner.gnm1.ann1.07MYST Arachis hypogaea HOM05D003406 ORTHO05D004026 1.8e-42 177.6 301 61.5
Peaxi162Scf00341g00714 Petunia axillaris HOM05D003406 ORTHO05D004026 5.7e-41 172.6 268 63.8
RcHm_v2.0_Chr4g0404661 Rosa chinensis HOM05D003406 ORTHO05D004026 1.8e-39 167.5 365 54.5
FAN23G2061 Fragaria x ananassa HOM05D003406 ORTHO05D004026 7.0e-39 165.6 245 39.6
FAN19G2649 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.6e-38 164.5 199 69.3
TPR.G36904 Trifolium pratense HOM05D003406 ORTHO05D004026 4.5e-38 162.9 167 53.3
TPR.G24634 Trifolium pratense HOM05D003406 ORTHO05D004026 3.8e-37 159.8 167 53.3
Sabra01G0019600 Salix brachista HOM05D003406 ORTHO05D004026 6.6e-37 159.1 250 54.0
Actinidia10165 Actinidia chinensis HOM05D003406 ORTHO05D004026 4.2e-36 156.4 318 34.9
FAN28G2604 Fragaria x ananassa HOM05D003406 ORTHO05D004026 3.6e-35 153.3 377 52.0
FAN19G0629 Fragaria x ananassa HOM05D003406 ORTHO05D004026 6.8e-34 149.1 377 52.0
Dinv09276 Davidia involucrata HOM05D003406 ORTHO05D004026 2.2e-32 144.1 327 33.9
MCO04G412 Micromonas commoda HOM05D003406 ORTHO05D004026 2.2e-32 144.1 300 54.0
RcHm_v2.0_Chr3g0486211 Rosa chinensis HOM05D003406 ORTHO05D004026 1.4e-31 141.4 227 68.3
ClCG01G007460 Citrullus lanatus HOM05D003406 ORTHO05D004026 2.4e-31 140.6 279 50.5
MD02G1288700 Malus domestica HOM05D003406 ORTHO05D004026 1.6e-30 137.9 307 49.2
PRCOL_00004312 Prasinoderma coloniale HOM05D003406 ORTHO05D004026 1.6e-30 137.9 304 52.0
vmacro13749 Vaccinium macrocarpon HOM05D003406 ORTHO05D004026 7.8e-30 135.6 173 48.0
BolC3t13203H Brassica oleracea HOM05D003406 ORTHO05D004026 7.3e-28 129.0 307 47.9
unitig_26.g9605 Utricularia gibba HOM05D003406 ORTHO05D004026 9.5e-28 128.6 235 46.4
CDE04G3459 Ceratophyllum demersum HOM05D003406 ORTHO05D004026 4.7e-27 126.3 207 70.5
RcHm_v2.0_Chr3g0482821 Rosa chinensis HOM05D003406 ORTHO05D004026 2.3e-26 124.0 288 56.2
AUR62037193 Chenopodium quinoa HOM05D003406 ORTHO05D015410 4.0e-26 123.2 108 52.8
RcHm_v2.0_Chr5g0010661 Rosa chinensis HOM05D003406 ORTHO05D004026 5.2e-26 122.9 378 48.9
RcHm_v2.0_Chr3g0482981 Rosa chinensis HOM05D003406 ORTHO05D004026 1.7e-24 117.9 288 55.9
Haze_26561 Corylus avellana HOM05D003406 ORTHO05D004026 1.9e-23 114.4 268 29.9
SHI03990 Sapria himalayana HOM05D003406 ORTHO05D004026 3.2e-23 113.6 188 55.3
Nitab4.5_0000151g0240 Nicotiana tabacum HOM05D003406 ORTHO05D004026 4.6e-22 109.8 289 47.1
Nitab4.5_0001669g0120 Nicotiana tabacum HOM05D003406 ORTHO05D004026 4.6e-22 109.8 289 47.1
Rhsim07G0066700 Rhododendron simsii HOM05D003406 ORTHO05D004026 3.9e-21 106.7 398 26.6
Cre06.g251951 Chlamydomonas reinhardtii HOM05D003406 ORTHO05D004026 1.2e-19 101.7 301 37.5
PSO782G3285 Papaver somniferum HOM05D003406 ORTHO05D004026 5.2e-18 96.3 298 48.0
Ah.10g030390 Amaranthus hybridus HOM05D003406 ORTHO05D004026 8.9e-18 95.5 111 50.5
MBI02_g23406_MAGBIO Magnolia biondii HOM05D003406 ORTHO05D004026 4.4e-17 93.2 150 65.3
SHI03989 Sapria himalayana HOM05D003406 ORTHO05D004026 1.7e-16 91.3 100 54.0
AUR62037187 Chenopodium quinoa HOM05D003406 ORTHO05D004026 3.7e-16 90.1 301 52.5
VMungo1127G0085 Vigna mungo HOM05D003406 ORTHO05D004026 4.9e-16 89.7 338 37.3
FAN03G3378 Fragaria x ananassa HOM05D003406 ORTHO05D004026 1.1e-15 88.6 54 70.4
CARHR199960 Cardamine hirsuta HOM05D003406 ORTHO05D004026 1.9e-15 87.8 149 63.8
Duzib114G0281 Durio zibethinus HOM05D003406 ORTHO05D004026 1.9e-15 87.8 298 47.7
DCAR_031832 Daucus carota HOM05D003406 ORTHO05D004026 1.2e-14 85.1 175 36.0
Dinv32032 Davidia involucrata HOM05D003406 ORTHO05D004026 1.2e-14 85.1 54 68.5
RcHm_v2.0_Chr1g0323831 Rosa chinensis HOM05D003406 ORTHO05D004026 1.2e-14 85.1 54 68.5
Eucgr.G03238 Eucalyptus grandis HOM05D003406 ORTHO05D004026 1.6e-14 84.7 54 66.7
FvH4_7g02880 Fragaria vesca HOM05D003406 ORTHO05D004026 1.6e-14 84.7 381 45.9
Nn7g36639 Nelumbo nucifera HOM05D003406 ORTHO05D004026 1.6e-14 84.7 54 68.5
Thecc.10G162300 Theobroma cacao HOM05D003406 ORTHO05D004026 2.1e-14 84.3 54 66.7
Atru.chr12.1360 Acer truncatum HOM05D003406 ORTHO05D004026 2.7e-14 84.0 54 66.7
CSS0014544 Camellia sinensis var. sinensis HOM05D003406 ORTHO05D004026 2.7e-14 84.0 54 66.7
Cfa010885 Carpinus fangiana HOM05D003406 ORTHO05D004026 2.7e-14 84.0 54 66.7
CiPaw.14G007200 Carya illinoinensis HOM05D003406 ORTHO05D004026 2.7e-14 84.0 54 66.7
Haze_03074 Corylus avellana HOM05D003406 ORTHO05D004026 2.7e-14 84.0 54 66.7
Duzib106G0689 Durio zibethinus HOM05D003406 ORTHO05D004026 2.7e-14 84.0 54 64.8
QL04p014603 Quercus lobata HOM05D003406 ORTHO05D004026 2.7e-14 84.0 54 66.7
QL04p014965 Quercus lobata HOM05D003406 ORTHO05D004026 2.7e-14 84.0 54 66.7
Sc14g0005750 Simmondsia chinensis HOM05D003406 ORTHO05D004026 2.7e-14 84.0 54 64.8
Actinidia06245 Actinidia chinensis HOM05D003406 ORTHO05D004026 3.5e-14 83.6 376 45.7
EL10Ac2g02817 Beta vulgaris HOM05D003406 ORTHO05D004026 3.5e-14 83.6 54 66.7
AUR62026878 Chenopodium quinoa HOM05D003406 ORTHO05D004026 4.6e-14 83.2 54 66.7
Gohir.A10G183800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 4.6e-14 83.2 54 64.8
Gohir.D10G190800 Gossypium hirsutum HOM05D003406 ORTHO05D004026 4.6e-14 83.2 54 64.8
Gorai.011G213900 Gossypium raimondii HOM05D003406 ORTHO05D004026 4.6e-14 83.2 54 64.8
MD07G1038200 Malus domestica HOM05D003406 ORTHO05D004026 4.6e-14 83.2 54 64.8
Prupe.2G034300 Prunus persica HOM05D003406 ORTHO05D004026 4.6e-14 83.2 54 66.7
GSVIVG01013527001 Vitis vinifera HOM05D003406 ORTHO05D004026 4.6e-14 83.2 54 66.7
Cc00_g06910 Coffea canephora HOM05D003406 ORTHO05D004026 6.0e-14 82.8 54 66.7
CiPaw.13G012800 Carya illinoinensis HOM05D003406 ORTHO05D004026 1.0e-13 82.0 54 66.7
Manes.11G004700 Manihot esculenta HOM05D003406 ORTHO05D004026 1.0e-13 82.0 54 66.7
arahy.Tifrunner.gnm1.ann1.P8HZNX Arachis hypogaea HOM05D003406 ORTHO05D004026 1.3e-13 81.6 54 63.0
CANSAT25G0328 Cannabis sativa HOM05D003406 ORTHO05D004026 1.3e-13 81.6 54 63.0
MELO3C005161.2 Cucumis melo HOM05D003406 ORTHO05D004026 1.3e-13 81.6 54 64.8
CsaV3_5G024420 Cucumis sativus L. HOM05D003406 ORTHO05D004026 1.3e-13 81.6 54 64.8
HPP92_025009 Vanilla planifolia HOM05D003406 ORTHO05D004026 1.3e-13 81.6 54 66.7
SalBow5G0382 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.7e-13 81.3 54 66.7
SalBow5G3900 Salvia bowleyana HOM05D003406 ORTHO05D004026 1.7e-13 81.3 54 66.7
Potri.003G197900 Populus trichocarpa HOM05D003406 ORTHO05D004026 2.3e-13 80.9 54 66.7
Potri.T125206 Populus trichocarpa HOM05D003406 ORTHO05D004026 2.3e-13 80.9 54 66.7
Hund13347 Selenicereus undatus HOM05D003406 ORTHO05D004026 2.3e-13 80.9 54 64.8
Glyma.13G198200 Glycine max HOM05D003406 ORTHO05D004026 3.0e-13 80.5 54 63.0
Glyma.15G236500 Glycine max HOM05D003406 ORTHO05D004026 3.0e-13 80.5 54 63.0
Lj3g0018542 Lotus japonicus HOM05D003406 ORTHO05D004026 3.0e-13 80.5 54 63.0
AL6G24100 Arabidopsis lyrata HOM05D003406 ORTHO05D004026 3.9e-13 80.1 54 61.1
Migut.B01223 Erythranthe guttata HOM05D003406 ORTHO05D004026 3.9e-13 80.1 54 64.8
Lj7A583T43 Lonicera japonica HOM05D003406 ORTHO05D004026 3.9e-13 80.1 54 64.8
Medtr8g038550 Medicago truncatula HOM05D003406 ORTHO05D004026 3.9e-13 80.1 54 63.0
Potri.001G026800 Populus trichocarpa HOM05D003406 ORTHO05D004026 3.9e-13 80.1 54 64.8
AT5G13480 Arabidopsis thaliana HOM05D003406 ORTHO05D004026 5.1e-13 79.7 54 61.1
MSTRG.16987 Avicennia marina HOM05D003406 ORTHO05D004026 5.1e-13 79.7 54 64.8
Carub.0006s1164 Capsella rubella HOM05D003406 ORTHO05D004026 5.1e-13 79.7 54 61.1
Thhalv10012890m.g Eutrema salsugineum HOM05D003406 ORTHO05D004026 5.1e-13 79.7 54 61.1
Phvul.011G207400 Phaseolus vulgaris HOM05D003406 ORTHO05D004026 5.1e-13 79.7 54 63.0
PGR031G1802 Punica granatum HOM05D003406 ORTHO05D004026 5.1e-13 79.7 54 66.7
TAR369G0157 Trochodendron aralioides HOM05D003406 ORTHO05D004026 5.1e-13 79.7 54 64.8
Sed0018149 Sechium edule HOM05D003406 ORTHO05D004026 6.6e-13 79.3 54 63.0
THA.LOC104826724 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 6.6e-13 79.3 54 63.0
Ca_23943_v3 Cicer arietinum L. HOM05D003406 ORTHO05D004026 8.6e-13 79.0 54 63.0
FvH4_4g16141 Fragaria vesca HOM05D003406 ORTHO05D196757 8.6e-13 79.0 71 70.4
Lalb_Chr01g0007801 Lupinus albus HOM05D003406 ORTHO05D004026 8.6e-13 79.0 54 63.0
Lalb_Chr19g0132381 Lupinus albus HOM05D003406 ORTHO05D004026 8.6e-13 79.0 54 63.0
Psat4g192120 Pisum sativum HOM05D003406 ORTHO05D004026 8.6e-13 79.0 54 63.0
THA.LOC104819128 Tarenaya hassleriana HOM05D003406 ORTHO05D004026 8.6e-13 79.0 54 63.0
ATR0745G072 Amborella trichopoda HOM05D003406 ORTHO05D004026 1.1e-12 78.6 304 50.3
Ciclev10004445m.g Citrus clementina HOM05D003406 ORTHO05D004026 1.1e-12 78.6 54 63.0
PSO063G0746 Papaver somniferum HOM05D003406 ORTHO05D004026 1.1e-12 78.6 54 64.8
PSO561G0002 Papaver somniferum HOM05D003406 ORTHO05D004026 1.1e-12 78.6 54 64.8
BcaB01g05356 Brassica carinata HOM05D003406 ORTHO05D004026 1.5e-12 78.2 54 61.1
A03p06010 Brassica napus HOM05D003406 ORTHO05D004026 1.9e-12 77.8 54 61.1
BraA03t09938Z Brassica rapa HOM05D003406 ORTHO05D004026 1.9e-12 77.8 54 61.1
Lsat_1_v5_gn_1_115021 Lactuca sativa HOM05D003406 ORTHO05D004026 1.9e-12 77.8 54 63.0
Zm00001eb140970 Zea mays HOM05D003406 ORTHO05D004026 1.9e-12 77.8 54 61.1
Aqoxy4G02704 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 3.3e-12 77.0 54 64.8
Manes.04G160100 Manihot esculenta HOM05D003406 ORTHO05D004026 3.3e-12 77.0 54 63.0
ECA248G2072 Erigeron canadensis HOM05D003406 ORTHO05D004026 4.3e-12 76.6 54 59.3
TWI63G0701 Tripterygium wilfordii HOM05D003406 ORTHO05D004026 4.3e-12 76.6 54 63.0
HanXRQChr01g0004511 Helianthus annuus HOM05D003406 ORTHO05D004026 7.3e-12 75.9 54 61.1
HanXRQChr15g0463071 Helianthus annuus HOM05D003406 ORTHO05D004026 7.3e-12 75.9 54 61.1
Mapoly0029s0111 Marchantia polymorpha HOM05D003406 ORTHO05D004026 7.3e-12 75.9 54 64.8
C03p07050 Brassica napus HOM05D003406 ORTHO05D004026 1.6e-11 74.7 54 59.3
CBR_g16799 Chara braunii HOM05D003406 ORTHO05D004026 4.7e-11 73.2 54 57.4
CBR_g22487 Chara braunii HOM05D003406 ORTHO05D004026 4.7e-11 73.2 54 57.4
SMO353G0072 Selaginella moellendorffii HOM05D003406 ORTHO05D004026 1.1e-10 72.0 57 64.9
SEGI_34701 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 1.4e-10 71.6 54 63.0
Aa31LG11G7380 Aethionema arabicum HOM05D003406 ORTHO05D004026 2.3e-10 70.9 76 60.5
Sp6g30540 Schrenkiella parvula HOM05D003406 ORTHO05D004026 3.1e-10 70.5 81 58.0
Pp3c16_16500 Physcomitrium patens HOM05D003406 ORTHO05D004026 6.8e-10 69.3 120 42.5
Sabra03G0147300 Salix brachista HOM05D003406 ORTHO05D004026 1.5e-09 68.2 98 49.0
BcaNung01149 Brassica carinata HOM05D003406 ORTHO05D004026 2.0e-09 67.8 80 57.5
BcaNung01887 Brassica carinata HOM05D003406 ORTHO05D004026 2.0e-09 67.8 80 57.5
A02p01970 Brassica napus HOM05D003406 ORTHO05D004026 2.0e-09 67.8 80 57.5
C02p06160 Brassica napus HOM05D003406 ORTHO05D004026 2.0e-09 67.8 80 57.5
BolC2t06560H Brassica oleracea HOM05D003406 ORTHO05D004026 2.0e-09 67.8 80 57.5
BraA02t05170Z Brassica rapa HOM05D003406 ORTHO05D004026 2.0e-09 67.8 80 57.5
SEGI_13935 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.0e-09 67.8 99 48.5
SEGI_30282 Sequoiadendron giganteum HOM05D003406 ORTHO05D004026 2.6e-09 67.4 64 56.2
Aqoxy2G01593 Aquilegia oxysepala HOM05D003406 ORTHO05D004026 9.9e-09 65.5 54 57.4
Solyc08g067040.4 Solanum lycopersicum HOM05D003406 ORTHO05D004026 2.9e-08 63.9 77 53.2
Sopen08g020990 Solanum pennellii HOM05D003406 ORTHO05D004026 2.9e-08 63.9 77 53.2


User provided reference genes

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