Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5720 Fragaria x ananassa HOM05D006608 ORTHO05D008316 4.8e-166 587.8 304 100.0
FAN14G1365 Fragaria x ananassa HOM05D006608 ORTHO05D008316 7.1e-154 547.4 304 95.1
FAN02G2060 Fragaria x ananassa HOM05D006608 ORTHO05D008316 5.7e-151 537.7 316 91.5
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 2.0e-148 529.3 312 91.0
RcHm_v2.0_Chr3g0457591 Rosa chinensis HOM05D006608 ORTHO05D008316 2.0e-148 529.3 304 92.1
Prupe.6G309700 Prunus persica HOM05D006608 ORTHO05D008316 4.1e-125 451.8 335 74.0
MD12G1203800 Malus domestica HOM05D006608 ORTHO05D008316 1.4e-120 436.8 313 75.1
MD04G1191200 Malus domestica HOM05D006608 ORTHO05D008316 1.4e-117 426.8 319 73.0
FvH4_6g07900 Fragaria vesca HOM05D006608 ORTHO05D008316 2.0e-108 396.4 208 97.1
Lj2g0018741 Lotus japonicus HOM05D006608 ORTHO05D008316 8.0e-105 384.4 331 64.0
Ciclev10002108m.g Citrus clementina HOM05D006608 ORTHO05D008316 8.9e-104 380.9 305 66.2
CANSAT54G1874 Cannabis sativa HOM05D006608 ORTHO05D008316 1.2e-103 380.6 306 65.7
Eucgr.H01287 Eucalyptus grandis HOM05D006608 ORTHO05D008316 3.4e-103 379.0 334 61.7
Thecc.05G325800 Theobroma cacao HOM05D006608 ORTHO05D008316 1.0e-96 357.5 222 79.3
ECA240G1520 Erigeron canadensis HOM05D006608 ORTHO05D008316 5.2e-96 355.1 221 80.1
HanXRQChr09g0247441 Helianthus annuus HOM05D006608 ORTHO05D008316 1.2e-95 354.0 222 78.8
Potri.005G010700 Populus trichocarpa HOM05D006608 ORTHO05D008316 1.2e-95 354.0 223 78.0
CSS0011542 Camellia sinensis var. sinensis HOM05D006608 ORTHO05D008316 5.8e-95 351.7 219 79.9
Potri.013G006500 Populus trichocarpa HOM05D006608 ORTHO05D008316 9.8e-95 350.9 219 79.0
Manes.08G109600 Manihot esculenta HOM05D006608 ORTHO05D008316 3.7e-94 349.0 219 76.7
QL03p016892 Quercus lobata HOM05D006608 ORTHO05D008316 1.1e-93 347.4 216 78.7
Sabra05G0007800 Salix brachista HOM05D006608 ORTHO05D008316 1.1e-93 347.4 219 77.6
PGR031G0497 Punica granatum HOM05D006608 ORTHO05D008316 1.9e-93 346.7 220 78.2
COL.COLO4_05523 Corchorus olitorius HOM05D006608 ORTHO05D008316 2.4e-93 346.3 218 78.9
Sabra05G0019000 Salix brachista HOM05D006608 ORTHO05D008316 2.4e-93 346.3 219 77.2
Haze_04048 Corylus avellana HOM05D006608 ORTHO05D008316 3.2e-93 345.9 222 76.6
Duzib177G0608 Durio zibethinus HOM05D006608 ORTHO05D008316 3.2e-93 345.9 220 78.6
Cfa006713 Carpinus fangiana HOM05D006608 ORTHO05D008316 5.4e-93 345.1 216 78.7
SGA_v2.0_scaffold4G01979 Striga asiatica HOM05D006608 ORTHO05D008316 9.2e-93 344.4 221 77.8
Sabra13G0005500 Salix brachista HOM05D006608 ORTHO05D008316 3.5e-92 342.4 219 77.2
Peaxi162Scf00299g00341 Petunia axillaris HOM05D006608 ORTHO05D008316 6.0e-92 341.7 264 68.2
CiPaw.08G154200 Carya illinoinensis HOM05D006608 ORTHO05D008316 7.8e-92 341.3 219 76.7
VMungo1383G0735 Vigna mungo HOM05D006608 ORTHO05D008316 1.0e-91 340.9 399 51.6
TWI12G0784 Tripterygium wilfordii HOM05D006608 ORTHO05D008316 1.3e-91 340.5 221 76.9
Gorai.013G208300 Gossypium raimondii HOM05D006608 ORTHO05D008316 1.7e-91 340.1 217 78.8
vmacro01585 Vaccinium macrocarpon HOM05D006608 ORTHO05D008316 5.0e-91 338.6 226 74.3
arahy.Tifrunner.gnm1.ann1.0RV1NN Arachis hypogaea HOM05D006608 ORTHO05D008316 6.6e-91 338.2 286 63.6
Sed0000881 Sechium edule HOM05D006608 ORTHO05D008316 6.6e-91 338.2 224 76.3
Gohir.A13G176500 Gossypium hirsutum HOM05D006608 ORTHO05D008316 8.6e-91 337.8 216 78.7
arahy.Tifrunner.gnm1.ann1.FYW6BY Arachis hypogaea HOM05D006608 ORTHO05D008316 1.9e-90 336.7 306 60.5
ClCG01G010870 Citrullus lanatus HOM05D006608 ORTHO05D008316 3.3e-90 335.9 227 74.9
CsaV3_1G015710 Cucumis sativus L. HOM05D006608 ORTHO05D008316 9.5e-90 334.3 224 75.4
DCAR_002111 Daucus carota HOM05D006608 ORTHO05D008316 1.2e-89 334.0 215 75.3
THA.LOC104820562 Tarenaya hassleriana HOM05D006608 ORTHO05D008316 1.2e-89 334.0 217 76.5
MSTRG.16414 Avicennia marina HOM05D006608 ORTHO05D008316 2.1e-89 333.2 220 75.5
Cc02_g35130 Coffea canephora HOM05D006608 ORTHO05D008316 8.0e-89 331.3 221 74.2
Migut.B00927 Erythranthe guttata HOM05D006608 ORTHO05D008316 8.0e-89 331.3 220 74.5
Nitab4.5_0005908g0020 Nicotiana tabacum HOM05D006608 ORTHO05D008316 1.4e-88 330.5 215 75.8
Phvul.001G224100 Phaseolus vulgaris HOM05D006608 ORTHO05D008316 1.8e-88 330.1 227 74.4
SalBow5G2350 Salvia bowleyana HOM05D006608 ORTHO05D008316 2.3e-88 329.7 219 74.4
AUR62006773 Chenopodium quinoa HOM05D006608 ORTHO05D008316 3.1e-88 329.3 225 72.9
Lsat_1_v5_gn_7_65241 Lactuca sativa HOM05D006608 ORTHO05D008316 3.1e-88 329.3 213 77.5
Actinidia35508 Actinidia chinensis HOM05D006608 ORTHO05D008316 5.2e-88 328.6 254 66.1
Sopen01g048480 Solanum pennellii HOM05D006608 ORTHO05D008316 5.2e-88 328.6 235 71.5
Solyc01g106090.3 Solanum lycopersicum HOM05D006608 ORTHO05D008316 6.8e-88 328.2 293 62.5
arahy.Tifrunner.gnm1.ann1.7ZK9KC Arachis hypogaea HOM05D006608 ORTHO05D008316 8.9e-88 327.8 221 72.9
Ca_09291_v3 Cicer arietinum L. HOM05D006608 ORTHO05D008316 8.9e-88 327.8 219 75.8
Lalb_Chr04g0260371 Lupinus albus HOM05D006608 ORTHO05D008316 8.9e-88 327.8 222 73.0
PGSC0003DMG400010682 Solanum tuberosum HOM05D006608 ORTHO05D008316 8.9e-88 327.8 235 71.1
GSVIVG01031268001 Vitis vinifera HOM05D006608 ORTHO05D008316 1.2e-87 327.4 219 74.0
Aqoxy2G02631 Aquilegia oxysepala HOM05D006608 ORTHO05D008316 1.5e-87 327.0 219 74.0
Lj9A306T68 Lonicera japonica HOM05D006608 ORTHO05D008316 1.5e-87 327.0 205 76.6
TAR362G0553 Trochodendron aralioides HOM05D006608 ORTHO05D008316 1.5e-87 327.0 212 74.5
CAN.G504.78 Capsicum annuum HOM05D006608 ORTHO05D008316 2.0e-87 326.6 235 71.5
arahy.Tifrunner.gnm1.ann1.V41D0B Arachis hypogaea HOM05D006608 ORTHO05D008316 3.4e-87 325.9 221 71.9
Dinv30914 Davidia involucrata HOM05D006608 ORTHO05D008316 3.4e-87 325.9 207 76.8
Glyma.03G230300 Glycine max HOM05D006608 ORTHO05D008316 3.4e-87 325.9 218 74.3
Ah.04g158480 Amaranthus hybridus HOM05D006608 ORTHO05D008316 5.8e-87 325.1 219 74.0
Nitab4.5_0002750g0060 Nicotiana tabacum HOM05D006608 ORTHO05D008316 5.8e-87 325.1 215 74.4
MBI18_g27388_MAGBIO Magnolia biondii HOM05D006608 ORTHO05D008316 7.5e-87 324.7 211 73.9
Rhsim11G0098400 Rhododendron simsii HOM05D006608 ORTHO05D008316 1.7e-86 323.6 249 67.5
Hund21858 Selenicereus undatus HOM05D006608 ORTHO05D008316 2.9e-86 322.8 222 72.5
MELO3C026109.2 Cucumis melo HOM05D006608 ORTHO05D008316 6.4e-86 321.6 208 77.4
PSO210G3601 Papaver somniferum HOM05D006608 ORTHO05D008316 6.4e-86 321.6 250 64.8
PSO761G0023 Papaver somniferum HOM05D006608 ORTHO05D008316 6.4e-86 321.6 211 73.5
C01p27450 Brassica napus HOM05D006608 ORTHO05D008316 1.9e-85 320.1 214 74.8
Cpa.g.sc48.186 Carica papaya HOM05D006608 ORTHO05D008316 3.2e-85 319.3 222 73.9
EL10Ac4g09502 Beta vulgaris HOM05D006608 ORTHO05D008316 7.1e-85 318.2 219 72.6
CDE01G0267 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 1.6e-84 317.0 211 71.6
Psat3g014240 Pisum sativum HOM05D006608 ORTHO05D008316 1.6e-84 317.0 222 71.2
A08p11770 Brassica napus HOM05D006608 ORTHO05D008316 3.5e-84 315.8 214 74.8
BraA08t33169Z Brassica rapa HOM05D006608 ORTHO05D008316 3.5e-84 315.8 214 74.8
Thhalv10025982m.g Eutrema salsugineum HOM05D006608 ORTHO05D008316 6.0e-84 315.1 223 71.3
Gohir.D13G182950 Gossypium hirsutum HOM05D006608 ORTHO05D008316 1.0e-83 314.3 217 74.7
A01p22060 Brassica napus HOM05D006608 ORTHO05D008316 1.7e-83 313.5 215 73.0
BolC8t48283H Brassica oleracea HOM05D006608 ORTHO05D008316 1.7e-83 313.5 242 68.6
Sp7g13760 Schrenkiella parvula HOM05D006608 ORTHO05D008316 3.0e-83 312.8 214 74.3
BcaC09g50245 Brassica carinata HOM05D006608 ORTHO05D008316 8.6e-83 311.2 211 73.9
BcaC07g37888 Brassica carinata HOM05D006608 ORTHO05D008316 1.1e-82 310.8 214 73.4
TPR.G1650 Trifolium pratense HOM05D006608 ORTHO05D008316 1.1e-82 310.8 213 73.2
AL7G40010 Arabidopsis lyrata HOM05D006608 ORTHO05D008316 1.9e-82 310.1 214 74.3
BolC1t02685H Brassica oleracea HOM05D006608 ORTHO05D008316 1.9e-82 310.1 211 73.5
Medtr7g111880 Medicago truncatula HOM05D006608 ORTHO05D008316 1.9e-82 310.1 214 72.9
Carub.0007s2637 Capsella rubella HOM05D006608 ORTHO05D008316 2.5e-82 309.7 215 73.0
AT4G15510 Arabidopsis thaliana HOM05D006608 ORTHO05D008316 3.3e-82 309.3 205 75.6
CDE12G0684 Ceratophyllum demersum HOM05D006608 ORTHO05D008316 7.3e-82 308.1 207 70.5
unitig_0.g2226 Utricularia gibba HOM05D006608 ORTHO05D008316 7.3e-82 308.1 244 64.8
BcaNung00268 Brassica carinata HOM05D006608 ORTHO05D008316 2.1e-81 306.6 211 73.9
CARHR222300 Cardamine hirsuta HOM05D006608 ORTHO05D008316 6.8e-80 301.6 214 71.5
Aa31LG2G11410 Aethionema arabicum HOM05D006608 ORTHO05D008316 8.9e-80 301.2 214 70.6
ATR0706G264 Amborella trichopoda HOM05D006608 ORTHO05D008316 2.0e-79 300.1 188 76.6
Os07g0275100 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 2.9e-78 296.2 219 67.1
BcaB04g18298 Brassica carinata HOM05D006608 ORTHO05D008316 1.1e-77 294.3 178 79.8
Nn4g25453 Nelumbo nucifera HOM05D006608 ORTHO05D008316 5.4e-77 292.0 214 67.8
Zm00001eb028550 Zea mays HOM05D006608 ORTHO05D008316 5.4e-77 292.0 217 69.6
BcaC09g50241 Brassica carinata HOM05D006608 ORTHO05D008316 9.6e-74 281.2 191 73.3
SEGI_38534 Sequoiadendron giganteum HOM05D006608 ORTHO05D008316 4.0e-72 275.8 215 62.3
Mapoly0002s0119 Marchantia polymorpha HOM05D006608 ORTHO05D008316 1.9e-66 256.9 189 63.5
Oeu019844.1 Olea europaea HOM05D006608 ORTHO05D008316 3.3e-66 256.1 206 65.0
Pp3c25_7030 Physcomitrium patens HOM05D006608 ORTHO05D008316 5.3e-64 248.8 208 60.6
SMO203G0012 Selaginella moellendorffii HOM05D006608 ORTHO05D008316 1.8e-56 223.8 174 60.3
CBR_g54968 Chara braunii HOM05D006608 ORTHO05D008316 4.9e-54 215.7 180 56.7
Sc09g0002570 Simmondsia chinensis HOM05D006608 ORTHO05D008316 2.5e-50 203.4 135 71.9
Os12g0564400 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 7.1e-45 185.3 149 61.1
Cre08.g362900 Chlamydomonas reinhardtii HOM05D006608 ORTHO05D008316 8.7e-43 178.3 219 45.7
AUR62000427 Chenopodium quinoa HOM05D006608 ORTHO05D008316 2.5e-42 176.8 114 76.3
MCO08G333 Micromonas commoda HOM05D006608 ORTHO05D008316 1.1e-34 151.4 188 42.6
PRCOL_00003409 Prasinoderma coloniale HOM05D006608 ORTHO05D008316 5.0e-22 109.4 188 35.1
Glyma.19G227402 Glycine max HOM05D006608 ORTHO05D008316 1.6e-20 104.4 78 64.1
Os07g0275901 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 7.4e-18 95.5 75 64.0
Os07g0275801 Oryza sativa ssp. japonica HOM05D006608 ORTHO05D008316 4.1e-16 89.7 54 72.2
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 1.4e-11 74.7 58 62.1
CANSAT54G0111 Cannabis sativa HOM05D002543 ORTHO05D002990 1.1e-10 71.6 61 62.3
DCAR_005274 Daucus carota HOM05D002543 ORTHO05D002990 5.7e-10 69.3 61 70.5
QL03p017109 Quercus lobata HOM05D002543 ORTHO05D002990 5.7e-10 69.3 115 45.2
QL03p017392 Quercus lobata HOM05D002543 ORTHO05D002990 5.7e-10 69.3 115 45.2
Dinv30917 Davidia involucrata HOM05D002543 ORTHO05D002990 1.3e-09 68.2 61 65.6
Hma1.2p1_0008F-1.1_g005360 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 1.3e-09 68.2 115 44.3
Hma1.2p1_1808F.1_g303465 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 1.3e-09 68.2 115 44.3
Prupe.6G309500 Prunus persica HOM05D002543 ORTHO05D002990 1.7e-09 67.8 107 47.7
ClCG01G010830 Citrullus lanatus HOM05D002543 ORTHO05D002990 3.7e-09 66.6 50 70.0
THA.LOC104816855 Tarenaya hassleriana HOM05D002543 ORTHO05D002990 3.7e-09 66.6 61 62.3
Atru.chr2.231 Acer truncatum HOM05D002543 ORTHO05D002990 4.8e-09 66.2 115 45.2
Cfa006711 Carpinus fangiana HOM05D002543 ORTHO05D002990 4.8e-09 66.2 115 43.5
GSVIVG01031272001 Vitis vinifera HOM05D002543 ORTHO05D002990 4.8e-09 66.2 111 45.9
CSS0021124 Camellia sinensis var. sinensis HOM05D002543 ORTHO05D002990 8.2e-09 65.5 130 40.8
AL1G19830 Arabidopsis lyrata HOM05D002543 ORTHO05D002990 1.4e-08 64.7 61 62.3
TAR633G0622 Trochodendron aralioides HOM05D006608 ORTHO05D008316 1.4e-08 64.7 52 59.6
Aa31LG1G5780 Aethionema arabicum HOM05D002543 ORTHO05D002990 1.8e-08 64.3 61 62.3
Haze_04051 Corylus avellana HOM05D002543 ORTHO05D002990 3.1e-08 63.5 115 42.6
THA.LOC104820540 Tarenaya hassleriana HOM05D002543 ORTHO05D002990 3.1e-08 63.5 115 41.7
TAR362G1343 Trochodendron aralioides HOM05D002543 ORTHO05D002990 3.1e-08 63.5 115 43.5
AT1G09340 Arabidopsis thaliana HOM05D002543 ORTHO05D002990 7.0e-08 62.4 61 60.7
BcaC07g41887 Brassica carinata HOM05D002543 ORTHO05D002990 7.0e-08 62.4 61 60.7
Carub.0001s0868 Capsella rubella HOM05D002543 ORTHO05D002990 7.0e-08 62.4 61 60.7
CiPaw.07G031800 Carya illinoinensis HOM05D002543 ORTHO05D002990 7.0e-08 62.4 115 41.7
Thhalv10007937m.g Eutrema salsugineum HOM05D002543 ORTHO05D002990 9.1e-08 62.0 61 60.7
Sp1g07950 Schrenkiella parvula HOM05D002543 ORTHO05D002990 9.1e-08 62.0 61 59.0
BcaB07g34128 Brassica carinata HOM05D002543 ORTHO05D002990 1.2e-07 61.6 61 60.7
BraA06t23817Z Brassica rapa HOM05D002543 ORTHO05D002990 1.2e-07 61.6 61 60.7
BcaC05g24788 Brassica carinata HOM05D002543 ORTHO05D002990 1.6e-07 61.2 61 59.0
C05p07330 Brassica napus HOM05D002543 ORTHO05D002990 1.6e-07 61.2 61 59.0
BolC5t29491H Brassica oleracea HOM05D002543 ORTHO05D002990 1.6e-07 61.2 61 59.0
MBI19_g32691_MAGBIO Magnolia biondii HOM05D002543 ORTHO05D002990 1.6e-07 61.2 65 60.0
Cpa.g.sc48.194 Carica papaya HOM05D002543 ORTHO05D002990 2.0e-07 60.8 61 62.3
Lj1g0015240 Lotus japonicus HOM05D002543 ORTHO05D002990 2.0e-07 60.8 125 40.8
Nitab4.5_0002084g0070 Nicotiana tabacum HOM05D002543 ORTHO05D002990 2.0e-07 60.8 61 60.7
Nitab4.5_0006914g0020 Nicotiana tabacum HOM05D002543 ORTHO05D002990 2.0e-07 60.8 61 60.7
PGR031G1645 Punica granatum HOM05D002543 ORTHO05D002990 2.0e-07 60.8 112 42.0
A06p06060 Brassica napus HOM05D002543 ORTHO05D002990 2.7e-07 60.5 61 59.0
COL.COLO4_05521 Corchorus olitorius HOM05D002543 ORTHO05D002990 2.7e-07 60.5 61 62.3
FAN02G0698 Fragaria x ananassa HOM05D002543 ORTHO05D002990 5.9e-07 59.3 107 43.9
MELO3C008920.2 Cucumis melo HOM05D002543 ORTHO05D002990 1.0e-06 58.5 50 62.0
CsaV3_4G030580 Cucumis sativus L. HOM05D002543 ORTHO05D002990 1.0e-06 58.5 50 62.0
CARHR009310 Cardamine hirsuta HOM05D002543 ORTHO05D002990 1.3e-06 58.2 61 57.4
Duzib177G1067 Durio zibethinus HOM05D002543 ORTHO05D002990 1.3e-06 58.2 61 60.7
Manes.09G179000 Manihot esculenta HOM05D002543 ORTHO05D002990 1.3e-06 58.2 115 42.6
Cc02_g35140 Coffea canephora HOM05D002543 ORTHO05D002990 1.7e-06 57.8 61 57.4
Eucgr.H03311 Eucalyptus grandis HOM05D002543 ORTHO05D002990 1.7e-06 57.8 115 41.7
MD04G1191000 Malus domestica HOM05D002543 ORTHO05D002990 1.7e-06 57.8 64 64.1
GSVIVG01016616001 Vitis vinifera HOM05D002933 ORTHO05D009221 1.7e-06 57.8 176 26.1
C08p49510 Brassica napus HOM05D002543 ORTHO05D002990 2.2e-06 57.4 66 54.5
Sc09g0002550 Simmondsia chinensis HOM05D002543 ORTHO05D002990 2.2e-06 57.4 115 40.9
MD12G1203600 Malus domestica HOM05D002543 ORTHO05D002990 2.9e-06 57.0 64 64.1
Peaxi162Scf00413g00612 Petunia axillaris HOM05D002543 ORTHO05D002990 3.8e-06 56.6 45 68.9
Lalb_Chr04g0260351 Lupinus albus HOM05D002543 ORTHO05D002990 5.0e-06 56.2 61 57.4
Phvul.001G223800 Phaseolus vulgaris HOM05D002543 ORTHO05D002990 5.0e-06 56.2 115 40.9
RcHm_v2.0_Chr3g0457611 Rosa chinensis HOM05D002543 ORTHO05D002990 5.0e-06 56.2 107 42.1
VMungo1383G0020 Vigna mungo HOM05D002543 ORTHO05D002990 5.0e-06 56.2 61 57.4
MSTRG.27925 Avicennia marina HOM05D002543 ORTHO05D002990 6.5e-06 55.8 60 55.0
Eucgr.L03253 Eucalyptus grandis HOM05D002933 ORTHO05D009221 8.5e-06 55.5 206 25.2
Glyma.19G227700 Glycine max HOM05D002543 ORTHO05D002990 8.5e-06 55.5 115 39.1
Potri.013G006100 Populus trichocarpa HOM05D002543 ORTHO05D002990 8.5e-06 55.5 61 57.4
TPR.G13990 Trifolium pratense HOM05D002933 ORTHO05D009221 8.5e-06 55.5 175 24.6


User provided reference genes

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