Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN05G5216 Fragaria x ananassa HOM05D005933 ORTHO05D007366 7.2e-267 923.3 459 100.0
FAN02G2268 Fragaria x ananassa HOM05D005933 ORTHO05D007366 4.5e-261 904.0 459 98.0
FvH4_6g23820 Fragaria vesca HOM05D005933 ORTHO05D007366 5.7e-256 887.1 459 97.2
FAN14G1069 Fragaria x ananassa HOM05D005933 ORTHO05D007366 6.4e-247 857.1 439 97.7
RcHm_v2.0_Chr3g0482381 Rosa chinensis HOM05D005933 ORTHO05D007366 1.2e-224 783.1 473 84.1
MD12G1074000 Malus domestica HOM05D005933 ORTHO05D007366 2.7e-197 692.2 471 74.7
QL07p000555 Quercus lobata HOM05D005933 ORTHO05D007366 1.4e-180 636.7 459 69.9
Haze_19854 Corylus avellana HOM05D005933 ORTHO05D007366 1.8e-180 636.3 449 71.0
QL07p000522 Quercus lobata HOM05D005933 ORTHO05D007366 5.1e-180 634.8 459 69.3
CiPaw.08G166600 Carya illinoinensis HOM05D005933 ORTHO05D007366 6.3e-178 627.9 465 68.6
Lj1g0013042 Lotus japonicus HOM05D005933 ORTHO05D007366 1.4e-172 610.1 463 66.7
GSVIVG01033275001 Vitis vinifera HOM05D005933 ORTHO05D007366 3.3e-171 605.5 475 65.7
Duzib093G2041 Durio zibethinus HOM05D005933 ORTHO05D007366 1.3e-170 603.6 465 66.2
Lalb_Chr25g0287121 Lupinus albus HOM05D005933 ORTHO05D007366 2.2e-170 602.8 458 65.7
Glyma.03G136900 Glycine max HOM05D005933 ORTHO05D007366 9.1e-169 597.4 469 64.8
Ca_08457_v3 Cicer arietinum L. HOM05D005933 ORTHO05D007366 2.0e-168 596.3 463 65.7
TWI74G0083 Tripterygium wilfordii HOM05D005933 ORTHO05D007366 2.0e-168 596.3 470 64.0
CANSAT78G0457 Cannabis sativa HOM05D005933 ORTHO05D007366 2.6e-168 595.9 477 64.4
Potri.006G051300 Populus trichocarpa HOM05D005933 ORTHO05D007366 7.7e-168 594.3 464 64.4
Sabra06G0036000 Salix brachista HOM05D005933 ORTHO05D007366 7.7e-168 594.3 456 65.6
arahy.Tifrunner.gnm1.ann1.T110QE Arachis hypogaea HOM05D005933 ORTHO05D007366 1.0e-167 594.0 467 63.8
Ciclev10004945m.g Citrus clementina HOM05D005933 ORTHO05D007366 1.0e-167 594.0 460 64.1
Actinidia39225 Actinidia chinensis HOM05D005933 ORTHO05D007366 1.3e-167 593.6 479 64.3
Medtr7g091500 Medicago truncatula HOM05D005933 ORTHO05D007366 2.2e-167 592.8 463 65.0
arahy.Tifrunner.gnm1.ann1.EHL0AN Arachis hypogaea HOM05D005933 ORTHO05D007366 3.8e-167 592.0 463 63.9
Phvul.001G132100 Phaseolus vulgaris HOM05D005933 ORTHO05D007366 8.5e-167 590.9 461 64.9
Gohir.D11G173800 Gossypium hirsutum HOM05D005933 ORTHO05D007366 4.7e-165 585.1 463 65.0
Gorai.007G186200 Gossypium raimondii HOM05D005933 ORTHO05D007366 6.1e-165 584.7 463 65.0
Eucgr.A02347 Eucalyptus grandis HOM05D005933 ORTHO05D007366 3.0e-164 582.4 464 65.1
Hma1.2p1_2002F.1_g310760 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 1.5e-163 580.1 476 63.7
Thecc.05G153300 Theobroma cacao HOM05D005933 ORTHO05D007366 4.4e-163 578.6 466 62.9
Manes.09G022000 Manihot esculenta HOM05D005933 ORTHO05D007366 9.7e-163 577.4 454 65.0
Gohir.A11G167500 Gossypium hirsutum HOM05D005933 ORTHO05D007366 2.2e-162 576.2 463 64.1
COL.COLO4_28284 Corchorus olitorius HOM05D005933 ORTHO05D007366 3.7e-162 575.5 459 63.6
Actinidia09329 Actinidia chinensis HOM05D005933 ORTHO05D007366 2.4e-161 572.8 480 62.1
CSS0022562 Camellia sinensis var. sinensis HOM05D005933 ORTHO05D007366 2.5e-158 562.8 473 60.7
TPR.G854 Trifolium pratense HOM05D005933 ORTHO05D007366 4.2e-158 562.0 403 69.7
Psat3g072720 Pisum sativum HOM05D005933 ORTHO05D007366 5.5e-158 561.6 440 65.2
vmacro07854 Vaccinium macrocarpon HOM05D005933 ORTHO05D007366 1.2e-157 560.5 503 57.9
THA.LOC104811196 Tarenaya hassleriana HOM05D005933 ORTHO05D007366 1.6e-157 560.1 461 61.0
Sed0001053 Sechium edule HOM05D005933 ORTHO05D007366 2.7e-157 559.3 467 62.5
Lju124A41G42 Lonicera japonica HOM05D005933 ORTHO05D007366 6.1e-157 558.1 436 64.9
Cpa.g.sc92.52 Carica papaya HOM05D005933 ORTHO05D007366 5.2e-156 555.1 459 62.1
PGR004G0721 Punica granatum HOM05D005933 ORTHO05D007366 2.0e-155 553.1 472 60.4
MELO3C009712.2 Cucumis melo HOM05D005933 ORTHO05D007366 2.2e-154 549.7 478 60.0
Rhsim03G0021100 Rhododendron simsii HOM05D005933 ORTHO05D007366 3.7e-154 548.9 466 61.2
Cc06_g17560 Coffea canephora HOM05D005933 ORTHO05D007366 4.8e-154 548.5 495 58.8
Rhsim03G0022400 Rhododendron simsii HOM05D005933 ORTHO05D007366 4.8e-154 548.5 468 61.1
VMungo1383G3081 Vigna mungo HOM05D005933 ORTHO05D007366 6.3e-154 548.1 562 53.4
Solyc10g080110.3 Solanum lycopersicum HOM05D005933 ORTHO05D007366 1.4e-153 547.0 482 57.7
PGSC0003DMG400023688 Solanum tuberosum HOM05D005933 ORTHO05D007366 4.1e-153 545.4 485 57.3
Sopen10g030730 Solanum pennellii HOM05D005933 ORTHO05D007366 1.6e-152 543.5 482 57.5
Aa31LG6G13690 Aethionema arabicum HOM05D005933 ORTHO05D007366 5.9e-152 541.6 461 58.8
Thhalv10025158m.g Eutrema salsugineum HOM05D005933 ORTHO05D007366 1.7e-151 540.0 460 58.9
Sp7g34530 Schrenkiella parvula HOM05D005933 ORTHO05D007366 1.7e-151 540.0 465 59.4
CARHR244310 Cardamine hirsuta HOM05D005933 ORTHO05D007366 2.2e-151 539.7 460 59.8
AT4G35910 Arabidopsis thaliana HOM05D005933 ORTHO05D007366 1.1e-150 537.3 460 58.7
CsaV3_3G039700 Cucumis sativus L. HOM05D005933 ORTHO05D007366 1.9e-150 536.6 480 58.8
AL7G15130 Arabidopsis lyrata HOM05D005933 ORTHO05D007366 4.2e-150 535.4 461 58.4
Oeu017944.1 Olea europaea HOM05D005933 ORTHO05D007366 5.5e-150 535.0 468 58.8
ClCG10G016640 Citrullus lanatus HOM05D005933 ORTHO05D007366 2.8e-149 532.7 519 56.1
Peaxi162Scf00618g00022 Petunia axillaris HOM05D005933 ORTHO05D007366 4.7e-149 531.9 471 57.3
MSTRG.19860 Avicennia marina HOM05D005933 ORTHO05D007366 4.0e-148 528.9 482 57.9
DCAR_009061 Daucus carota HOM05D005933 ORTHO05D007366 1.2e-147 527.3 483 57.1
Carub.0007s0431 Capsella rubella HOM05D005933 ORTHO05D007366 3.4e-147 525.8 460 58.3
Nitab4.5_0008648g0010 Nicotiana tabacum HOM05D005933 ORTHO05D007366 2.2e-146 523.1 502 54.6
AUR62026040 Chenopodium quinoa HOM05D005933 ORTHO05D007366 3.7e-146 522.3 462 57.6
Lsat_1_v5_gn_8_81281 Lactuca sativa HOM05D005933 ORTHO05D007366 6.3e-146 521.5 472 57.2
EL10Ac3g07091 Beta vulgaris HOM05D005933 ORTHO05D007366 5.4e-145 518.5 471 57.3
Dinv39604 Davidia involucrata HOM05D005933 ORTHO05D007366 5.4e-145 518.5 391 68.3
Hund05286 Selenicereus undatus HOM05D005933 ORTHO05D007366 5.4e-145 518.5 438 61.0
A01p02040 Brassica napus HOM05D005933 ORTHO05D007366 7.0e-145 518.1 461 57.5
C01p02220 Brassica napus HOM05D005933 ORTHO05D007366 2.0e-144 516.5 461 57.3
Nitab4.5_0009442g0020 Nicotiana tabacum HOM05D005933 ORTHO05D007366 2.7e-144 516.2 457 58.4
BolC1t00214H Brassica oleracea HOM05D005933 ORTHO05D007366 7.8e-144 514.6 461 56.8
Migut.J01758 Erythranthe guttata HOM05D005933 ORTHO05D007366 7.8e-144 514.6 483 56.1
SalBow6G0452 Salvia bowleyana HOM05D005933 ORTHO05D007366 1.0e-143 514.2 472 57.4
BraA01t00193Z Brassica rapa HOM05D005933 ORTHO05D007366 1.3e-143 513.8 461 57.0
HanXRQChr09g0252561 Helianthus annuus HOM05D005933 ORTHO05D007366 2.9e-143 512.7 470 56.6
Atru.chr1.1098 Acer truncatum HOM05D005933 ORTHO05D007366 1.9e-142 510.0 370 69.5
ECA236G1702 Erigeron canadensis HOM05D005933 ORTHO05D007366 2.5e-142 509.6 463 57.9
Cfa008569 Carpinus fangiana HOM05D005933 ORTHO05D007366 5.2e-140 501.9 340 73.8
BcaNung03520 Brassica carinata HOM05D005933 ORTHO05D007366 1.2e-139 500.7 461 56.2
Aqoxy5G03564 Aquilegia oxysepala HOM05D005933 ORTHO05D007366 4.9e-138 495.4 468 54.9
AUR62024451 Chenopodium quinoa HOM05D005933 ORTHO05D007366 3.0e-135 486.1 494 53.4
SGA_v2.0_scaffold69G23116 Striga asiatica HOM05D005933 ORTHO05D007366 3.9e-135 485.7 471 53.9
Hma1.2p1_2002F.1_g310770 Hydrangea macrophylla HOM05D005933 ORTHO05D007366 1.0e-132 477.6 362 66.3
PSO782G3339 Papaver somniferum HOM05D005933 ORTHO05D007366 4.0e-132 475.7 473 55.2
CAN.G128.8 Capsicum annuum HOM05D005933 ORTHO05D007366 2.6e-131 473.0 383 62.4
Peaxi162Scf00354g00225 Petunia axillaris HOM05D005933 ORTHO05D007366 2.6e-131 473.0 436 55.3
Prupe.7G060900 Prunus persica HOM05D005933 ORTHO05D007366 4.4e-131 472.2 323 74.0
Ah.13g075070 Amaranthus hybridus HOM05D005933 ORTHO05D007366 6.4e-130 468.4 447 54.6
ATR0686G233 Amborella trichopoda HOM05D005933 ORTHO05D007366 2.3e-119 433.3 424 52.4
MBI16_g31719_MAGBIO Magnolia biondii HOM05D005933 ORTHO05D007366 1.8e-116 423.7 477 50.7
Os12g0588900 Oryza sativa ssp. japonica HOM05D005933 ORTHO05D007366 2.2e-114 416.8 422 51.7
unitig_749.g14146 Utricularia gibba HOM05D003650 ORTHO05D004213 5.4e-113 412.1 472 50.2
Oeu008914.1 Olea europaea HOM05D005933 ORTHO05D007366 3.0e-111 406.4 356 58.7
Oeu008916.1 Olea europaea HOM05D005933 ORTHO05D007366 3.0e-111 406.4 356 58.7
Zm00001eb135000 Zea mays HOM05D005933 ORTHO05D007366 7.1e-105 385.2 461 46.2
SHI32975 Sapria himalayana HOM05D005933 ORTHO05D000023 5.1e-103 379.0 376 54.3
Sc13g0001740 Simmondsia chinensis HOM05D005933 ORTHO05D007366 4.0e-100 369.4 290 63.4
SEGI_18184 Sequoiadendron giganteum HOM05D005933 ORTHO05D007366 6.4e-98 362.1 442 44.1
HPP92_017763 Vanilla planifolia HOM05D005933 ORTHO05D007366 3.9e-87 326.2 356 47.2
Glyma.19G139200 Glycine max HOM05D005933 ORTHO05D007366 3.3e-86 323.2 238 68.9
CDE09G0169 Ceratophyllum demersum HOM05D005933 ORTHO05D007366 1.6e-85 320.9 261 60.5
TAR633G2718 Trochodendron aralioides HOM05D005933 ORTHO05D007366 2.2e-82 310.5 222 67.6
BcaNung04276 Brassica carinata HOM05D005933 ORTHO05D007366 1.0e-79 301.6 435 43.9
Mapoly0165s0023 Marchantia polymorpha HOM05D005933 ORTHO05D007366 1.4e-76 291.2 460 37.4
Cfa017604 Carpinus fangiana HOM05D005933 ORTHO05D007366 5.3e-68 262.7 377 44.0
AagrBONN_evm.TU.Sc2ySwM_117.299 Anthoceros agrestis HOM05D005933 ORTHO05D007366 6.9e-68 262.3 416 41.1
Rhsim03G0020400 Rhododendron simsii HOM05D005933 ORTHO05D007366 1.4e-65 254.6 232 59.5
SMO145G0218 Selaginella moellendorffii HOM05D005933 ORTHO05D007366 6.1e-64 249.2 344 41.0
Pp3c14_19420 Physcomitrium patens HOM05D005933 ORTHO05D007366 2.0e-59 234.2 292 43.5
MD12G1074100 Malus domestica HOM05D005933 ORTHO05D007366 3.6e-56 223.4 152 73.7
Cfa017749 Carpinus fangiana HOM05D005933 ORTHO05D007366 2.6e-51 207.2 218 52.8
CDE02G1215 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 5.0e-50 203.0 173 56.1
Atru.chr1.1100 Acer truncatum HOM05D005933 ORTHO05D007366 1.0e-47 195.3 172 61.6
C07p62070 Brassica napus HOM05D005933 ORTHO05D007366 1.4e-47 194.9 160 61.2
BolC7t46624H Brassica oleracea HOM05D005933 ORTHO05D007366 1.4e-47 194.9 160 61.2
CBR_g982 Chara braunii HOM05D005933 ORTHO05D007366 1.4e-44 184.9 423 31.0
Sc13g0001730 Simmondsia chinensis HOM05D005933 ORTHO05D007366 3.4e-38 163.7 148 54.1
Cc06_g12380 Coffea canephora HOM05D005933 ORTHO05D007366 1.3e-37 161.8 170 52.9
BcaNung03522 Brassica carinata HOM05D005933 ORTHO05D007366 7.0e-36 156.0 147 53.7
TAR633G2604 Trochodendron aralioides HOM05D005933 ORTHO05D007366 7.2e-33 146.0 102 68.6
TAR636G2120 Trochodendron aralioides HOM05D005933 ORTHO05D007366 2.8e-29 134.0 116 57.8
Cre01.g043500 Chlamydomonas reinhardtii HOM05D005933 ORTHO05D007366 6.6e-26 122.9 438 25.1
Nn8g40508 Nelumbo nucifera HOM05D005933 ORTHO05D007366 1.9e-17 94.7 67 70.1
Dinv12483 Davidia involucrata HOM05D005933 ORTHO05D007366 5.6e-17 93.2 105 50.5
SHI32976 Sapria himalayana HOM05D000105 ORTHO05D000023 2.8e-16 90.9 105 48.6
Rhsim03G0024000 Rhododendron simsii HOM05D005933 ORTHO05D007366 7.5e-14 82.8 53 73.6
Rhsim03G0022600 Rhododendron simsii HOM05D005933 ORTHO05D007366 2.9e-13 80.9 51 74.5
Nn8g40507 Nelumbo nucifera HOM05D005933 ORTHO05D007366 2.1e-11 74.7 81 50.6


User provided reference genes

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